These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9027#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 378 fasta sequence [TCGACGCCAAGAATTCGGTTCGAGGCCCAGTGACGTAGGGTGCTTAAAACGTAACGCTATAGGGATCATCTTTGGTTAATATGGGTGGAG-TTTTTTCAAATTTGTTCAGCCGTCTGTTCGGCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTACAGGTTAAAACTTGGGGAAGTTGTTACGACTATCCCTACAATTGGATTCAATGTTGAGACAGTGGAATATAGAAACATTAGTTTNACGGTGTGGGATGTCGGTGGACAANATAAAATACGTCCTTTATGGAAACATTATTTCCAAAACNCTCAAGGTTTAATATTCGTGGGTTGACANTAATGACCCTGATCGC] [+] EMBL CD077771 [TCGACGCCAAGAATTCGGTTCGAGGCCCAGTGACGTAGGGTGCTTAAAACGTAACGCTATAGGGATCATCTTTGGTTAATATGGGTGGAGTTTTTTTCAAATTTGTTCAGCCGTCTGTTCGGCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTACAGGTTAAAACTTGGGGAAGTTGTTACGACTATCCCTACAATTGGATTCAATGTTGAGACAGTGGAATATAGAAACATTAGTT ] [+] EMBL CD077538 [ CGGCACGAGGCCCAGTGACGTAGGGTGCTTAAAACGTAACGCTATAGGGATCATCTTTGGTTAATATGGGTGGAG TTTTTTCAAATTTGTTCAGCCGTCTGTTCGGCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTACAGGTTAAAACTTGGGGAAGTTGTTACGACTATCCCTANCATTGGATTCAATGTTGAGACAGTGGAA ] [+] EMBL AI110976 [ CGTAGGGTGCTTAAAACGTAACGCTATAGGGATCATCTTNGGTTAATATGGGTGGAG TTTTTTCAAATTTGTCCAGCCGTCTGTTCGGCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTACAGGTTAAAACTTGGGGAAGTTGTTACNACTATCCCTACAATTGGATTCNATGTTGAGACAGTGGAATATANAAACATTAGTTTNACGGTGTG ] [+] EMBL AI111040 [ GTAGGGTGCTTAAAACGTAACGCTATAGGGATCATCTTTGGTTAATATGGGTGGAG TTTTTTCAAATTTGTTCAGCCGTCTGTTCGGCAAGAAGGAANTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTACAGGTTAAAACTTGGGGAAGTTGTTACNACTATCCCTACAATTGGATTCAATGTTGAGACAGTGGAATATAGAAACATTAGTTTTACGGTGTGGGATGTCGGTGGACAANATAAAATACGTCCTTTATGGAAACATTATTTCCAAAACNCTCAAGGTTTAATATTCGTGGGTTGACANTAATGACCCTGATCGC] [-] EMBL CD097555 [ TGCTTAAAACGTAACGCTATAGGGATCATCTTTGGTTAATATGGGTGGAG TTTTTTCAAATTTGTTCAGCCGTCTGTTCGGCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTAC ] [+] EMBL SM6621 [ AACATGGGTGGAG TTTTTTCAAATTTGAACAGCCGACTGTTCGGCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTACAGGTTAAAACTTGGGGAAGTTGTTACGACTAT CCTACAA ] consensusID : consensus_9027#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 244 fasta sequence [GTGTGGGTATTTCAATCCCCAGTGACGTAAGGTGCTTAAAACGTAACGCTATAGGGATCATCTTTGGTTAATATGGGTGGAG-TATTTTCAAATTTGTTCAGCCGTCTGTTCGGCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTACAGGTTAAAACTTGGGGAAGTTGTTACGACTATCCCTACAATTGGATTCGCGATGAGTAGCATATGGG] [+] EMBL CD062736 [GTGTGGGTATTTCAATCCCCAGTGACGTAAGGTGCTTAAAACGTAACGCTATAGGGATCATCTTTGGTTAATATGGGTGGAG TATTTTCAAATTTGTTC ] [-] EMBL CD062691 [ cGGGATCATCTTTGGTTAATATGGGTGGAGTTTTTTTCAAATTTGTTCAGCCGTCTGTTCGGCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTACAGGTTAAAACTTGGGGAAGTTGTTACGACTATCCCTACAATTGGATTCGCGATGAGTAGCATATGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9027#0 TCGACGCCAAGAATTCGGTTCGAGGCCCAGTGACGTAGGGTGCTTAAAACGTAACGCTAT 60 consensus_9027#1 --------GTGTGGGTATTTCAATCCCCAGTGACGTAAGGTGCTTAAAACGTAACGCTAT 52 * *** * ************ ********************** consensus_9027#0 AGGGATCATCTTTGGTTAATATGGGTGGAGTTTTTTCAAATTTGTTCAGCCGTCTGTTCG 120 consensus_9027#1 AGGGATCATCTTTGGTTAATATGGGTGGAGTATTTTCAAATTTGTTCAGCCGTCTGTTCG 112 ******************************* **************************** consensus_9027#0 GCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATAT 180 consensus_9027#1 GCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATAT 172 ************************************************************ consensus_9027#0 TGTACAGGTTAAAACTTGGGGAAGTTGTTACGACTATCCCTACAATTGGATTCAATGTTG 240 consensus_9027#1 TGTACAGGTTAAAACTTGGGGAAGTTGTTACGACTATCCCTACAATTGGATTCG-CGATG 231 ***************************************************** * ** consensus_9027#0 AGACAGTGGAATATAGAAACATTAGTTTNACGGTGTGGGATGTCGGTGGACAANATAAAA 300 consensus_9027#1 AG----TAGCATATGGG------------------------------------------- 244 ** * * **** * consensus_9027#0 TACGTCCTTTATGGAAACATTATTTCCAAAACNCTCAAGGTTTAATATTCGTGGGTTGAC 360 consensus_9027#1 ------------------------------------------------------------ consensus_9027#0 ANTAATGACCCTGATCGC 378 consensus_9027#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||