cluster # 9027

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Schistosoma mansoni
cluster # 9027 cluster # 9027 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9027#0 length = 378 sequences # 6

consensus_9027#1 length = 244 sequences # 2

consensusID : consensus_9027#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 378
fasta sequence

                              [TCGACGCCAAGAATTCGGTTCGAGGCCCAGTGACGTAGGGTGCTTAAAACGTAACGCTATAGGGATCATCTTTGGTTAATATGGGTGGAG-TTTTTTCAAATTTGTTCAGCCGTCTGTTCGGCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTACAGGTTAAAACTTGGGGAAGTTGTTACGACTATCCCTACAATTGGATTCAATGTTGAGACAGTGGAATATAGAAACATTAGTTTNACGGTGTGGGATGTCGGTGGACAANATAAAATACGTCCTTTATGGAAACATTATTTCCAAAACNCTCAAGGTTTAATATTCGTGGGTTGACANTAATGACCCTGATCGC]

[+] EMBL CD077771             [TCGACGCCAAGAATTCGGTTCGAGGCCCAGTGACGTAGGGTGCTTAAAACGTAACGCTATAGGGATCATCTTTGGTTAATATGGGTGGAGTTTTTTTCAAATTTGTTCAGCCGTCTGTTCGGCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTACAGGTTAAAACTTGGGGAAGTTGTTACGACTATCCCTACAATTGGATTCAATGTTGAGACAGTGGAATATAGAAACATTAGTT                                                                                                               ]
[+] EMBL CD077538             [               CGGCACGAGGCCCAGTGACGTAGGGTGCTTAAAACGTAACGCTATAGGGATCATCTTTGGTTAATATGGGTGGAG TTTTTTCAAATTTGTTCAGCCGTCTGTTCGGCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTACAGGTTAAAACTTGGGGAAGTTGTTACGACTATCCCTANCATTGGATTCAATGTTGAGACAGTGGAA                                                                                                                               ]
[+] EMBL AI110976             [                                 CGTAGGGTGCTTAAAACGTAACGCTATAGGGATCATCTTNGGTTAATATGGGTGGAG TTTTTTCAAATTTGTCCAGCCGTCTGTTCGGCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTACAGGTTAAAACTTGGGGAAGTTGTTACNACTATCCCTACAATTGGATTCNATGTTGAGACAGTGGAATATANAAACATTAGTTTNACGGTGTG                                                                                                     ]
[+] EMBL AI111040             [                                  GTAGGGTGCTTAAAACGTAACGCTATAGGGATCATCTTTGGTTAATATGGGTGGAG TTTTTTCAAATTTGTTCAGCCGTCTGTTCGGCAAGAAGGAANTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTACAGGTTAAAACTTGGGGAAGTTGTTACNACTATCCCTACAATTGGATTCAATGTTGAGACAGTGGAATATAGAAACATTAGTTTTACGGTGTGGGATGTCGGTGGACAANATAAAATACGTCCTTTATGGAAACATTATTTCCAAAACNCTCAAGGTTTAATATTCGTGGGTTGACANTAATGACCCTGATCGC]
[-] EMBL CD097555             [                                        TGCTTAAAACGTAACGCTATAGGGATCATCTTTGGTTAATATGGGTGGAG TTTTTTCAAATTTGTTCAGCCGTCTGTTCGGCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTAC                                                                                                                                                                                                 ]
[+] EMBL SM6621               [                                                                             AACATGGGTGGAG TTTTTTCAAATTTGAACAGCCGACTGTTCGGCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTACAGGTTAAAACTTGGGGAAGTTGTTACGACTAT CCTACAA                                                                                                                                                         ]




>consensus_9027#0
TCGACGCCAAGAATTCGGTTCGAGGCCCAGTGACGTAGGGTGCTTAAAACGTAACGCTAT
AGGGATCATCTTTGGTTAATATGGGTGGAGTTTTTTCAAATTTGTTCAGCCGTCTGTTCG
GCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATAT
TGTACAGGTTAAAACTTGGGGAAGTTGTTACGACTATCCCTACAATTGGATTCAATGTTG
AGACAGTGGAATATAGAAACATTAGTTTNACGGTGTGGGATGTCGGTGGACAANATAAAA
TACGTCCTTTATGGAAACATTATTTCCAAAACNCTCAAGGTTTAATATTCGTGGGTTGAC
ANTAATGACCCTGATCGC

consensusID : consensus_9027#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 244
fasta sequence

                              [GTGTGGGTATTTCAATCCCCAGTGACGTAAGGTGCTTAAAACGTAACGCTATAGGGATCATCTTTGGTTAATATGGGTGGAG-TATTTTCAAATTTGTTCAGCCGTCTGTTCGGCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTACAGGTTAAAACTTGGGGAAGTTGTTACGACTATCCCTACAATTGGATTCGCGATGAGTAGCATATGGG]

[+] EMBL CD062736             [GTGTGGGTATTTCAATCCCCAGTGACGTAAGGTGCTTAAAACGTAACGCTATAGGGATCATCTTTGGTTAATATGGGTGGAG TATTTTCAAATTTGTTC                                                                                                                                                 ]
[-] EMBL CD062691             [                                                    cGGGATCATCTTTGGTTAATATGGGTGGAGTTTTTTTCAAATTTGTTCAGCCGTCTGTTCGGCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTACAGGTTAAAACTTGGGGAAGTTGTTACGACTATCCCTACAATTGGATTCGCGATGAGTAGCATATGGG]




>consensus_9027#1
GTGTGGGTATTTCAATCCCCAGTGACGTAAGGTGCTTAAAACGTAACGCTATAGGGATCA
TCTTTGGTTAATATGGGTGGAGTATTTTCAAATTTGTTCAGCCGTCTGTTCGGCAAGAAG
GAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATATTGTACAGG
TTAAAACTTGGGGAAGTTGTTACGACTATCCCTACAATTGGATTCGCGATGAGTAGCATA
TGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9027#0      TCGACGCCAAGAATTCGGTTCGAGGCCCAGTGACGTAGGGTGCTTAAAACGTAACGCTAT 60
consensus_9027#1      --------GTGTGGGTATTTCAATCCCCAGTGACGTAAGGTGCTTAAAACGTAACGCTAT 52
                                *       *** *  ************ **********************

consensus_9027#0      AGGGATCATCTTTGGTTAATATGGGTGGAGTTTTTTCAAATTTGTTCAGCCGTCTGTTCG 120
consensus_9027#1      AGGGATCATCTTTGGTTAATATGGGTGGAGTATTTTCAAATTTGTTCAGCCGTCTGTTCG 112
                      ******************************* ****************************

consensus_9027#0      GCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATAT 180
consensus_9027#1      GCAAGAAGGAAGTTCGTATCCTGATGGTTGGCCTGGATGCTGCAGGCAAGACAACAATAT 172
                      ************************************************************

consensus_9027#0      TGTACAGGTTAAAACTTGGGGAAGTTGTTACGACTATCCCTACAATTGGATTCAATGTTG 240
consensus_9027#1      TGTACAGGTTAAAACTTGGGGAAGTTGTTACGACTATCCCTACAATTGGATTCG-CGATG 231
                      *****************************************************   * **

consensus_9027#0      AGACAGTGGAATATAGAAACATTAGTTTNACGGTGTGGGATGTCGGTGGACAANATAAAA 300
consensus_9027#1      AG----TAGCATATGGG------------------------------------------- 244
                      **    * * **** *                                            

consensus_9027#0      TACGTCCTTTATGGAAACATTATTTCCAAAACNCTCAAGGTTTAATATTCGTGGGTTGAC 360
consensus_9027#1      ------------------------------------------------------------
                                                                                  

consensus_9027#0      ANTAATGACCCTGATCGC 378
consensus_9027#1      ------------------