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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9028#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1207 fasta sequence
[AAACACAAGCAAGTCAATCAAATGCAAGTAGTTTTGATTAAGGTAAGTAAATAGGATTTATGTAGGAGATAAAAAAGATGCGACAATAACAAAAAGAATTGGAAAGAGAGAGAAGCGATAGAACAACTGATTATATTTATTGGCTAGGGTGGCAAATTAAAAG-AAAACAAAATAACCGGTTTGATAAAACATTTTTTGAAAATTAAAGGAAGAATTTAAAAAGCGAAAAATTTATCAATCAATAAAGAGTATAAATTAATTTTTCACACCTTCATTATTTGATATAATGACAAAAACAATGAA-TTGATA-ANNNAACAAGGCGAAAAGAAGAATAAATATTCTGAATGAACATTAAGGTTATGATAAATAATCAATTTAATCCAATAAATCCTCTTCTACTTTATTCATGTGAAGTTTCGTTGCTTTGTTTTAATTTTATTTTAAAAATAAACATAATTGCAATTATCATAGTTGTTACAAGTAGAACTTGATAGTAGTAGTAGTTGTTGTAGTATTATACAGTAGTTGGACAGTGAACACCTTTTGCTTTATAACATGTTTGTGGAATGAATAACTCATGTTCCCAAAGAAAATCACTTGAATGATCAGTAGATAGGTCAGTGATCAAATTGTCTACTGGTTTCCCTTCATTCATACCGATAACATTTTCATCAACATCATCGAAATCTGAGAAGCTGCTAATCATGTTACTGCCACCGCCACCAACAAATCCAGAGTCAAATAAATTGTCTGGAAATGCAAGTCTAGGAGTGACTTTACCAGCATTGTATTCTGTATCAACATTACTACTATTAGATGTAGGTGATAAGATTAAGTTGGAGCATGGTATAGCAGTTTGCGATGGTATAGGTTTTTTTATACCACTACATGCATTCCCAGGCAATCTATCACTTGAAACCCATCGGTTGTCTGTAATGGGATGAAAATTATCATTTCGTACGGCGAGAATGGCAACTGATGAAGTGTGATTAAGATAGGGATCATATACGGTTGGTATAGTTGGTGATATTTGTTTTGAGTCGACCTACCTGCTACGATGTATAAATTGATTACAGTGTCCTTCGCTATTGTACTCCTGTGAAATAACAGATTGTAGAACATGTTTACCATATGAATGCAACTTCGGGATCCATGCGTAACTCTGAACTTGTTCTGTCTCGTTTAAGTGCTGGATATAATAATGTAC]
[+] EMBL CD139923 [AAACACAAGCAAGTCAATCAAATGCAAGTAGTTTTGATTAAGGTAAGTAAATAGGATTTATGTAGGAGATAAAAAAGATGCGACAATAACAAAAAGAATTGGAAAGAGAGAGAAGCGATAGAACAACTGATTATATTTATTGGCTAGGGTGGCAAATTAAAAG AAAACAAAATAACCGGTTTGATAAAACATTTTTTGAAAATTAAAGGAAGAATTTAAAAAGCGAAAAATTTATCAATCAATAAAGAGTATAAATTAATTTTTCACACCTTCATTATTTGATATAATGACAAAAACAATGAATTTGATACANNNAACAAG ]
[+] EMBL CD139975 [AAACACAAGCAAGTCAATCAAATGCAAGTAGTTTTGATTAAGGTAAGTAAATAGGATTTATGTAGGAGATAAAAAAGATGCGACAATAACAAAAAGAATTGGAAAGAGAGAGAAGCGATAGAACAACTGATTATATTTATTGGCTAGGGTGGCAAATTAAAAG AAAACAAAATAACCGGTTTGATAAAACATTTTTTGAAAATTAAAGGAAGAATTTAAAAAGCGAAAAA ]
[-] EMBL CD200837 [ AAAAGTAAAACAAAATACCCGGTTTGATAAAACATTTTTTGAAAATTAAAGGAAGAATTTAAAAAGCGAAAAATTTATCAATCAATAAAGAGTATAAATTAATTTTTCACACCTTCATTGTTTGATATAATGACAAAAACAATGAA TTGATA ACAAAACAAAGCGAAAAGAAGAATAAATATTCTGAATGAACATTAAGGTTATGATAAATAATCAATTTAATCCAATAAATCCTCTTCTACTTTATTCATGTGAAGTTTCGTTGCTTTGTTTTAATTTTATTTTAAAAATAAACATAATTGCAATTATCATAGTTGTTACAAGTAGAACTTGATAGTAGTAGTAGTTGTTGTAGTATTATACAGTAGTTGGACAGTGAACACCTTTTGCTT ]
[-] EMBL AW017024 [ TATCATAGTTGTTACAAGTAGAACTTGATAGTAGTAGTAGTAGTTGTAGTATTATACAGTAGTTGGACAGTGAACACCTTTTGCTTTATAACATGTTTGTGGAATGAATAACTCATGTTCCCAAAGAAAATCACTTGAATGATCAGTAGATAGGTCAGTGATCAAATTGTCTACTGGTTTCCCTTCATTCATACCGATAACATTTTCATCAACATCATCGAAATCTGAGAAGCTGCTAATCATGTTACTGCCACCGCCACCAACAAATCCAGAGTCAAATAAATTGTCTGGAAATGCAAGTCTAGGAGTGACTTTACCAGCATTGTATTCTGTATCAACATTACTACTATTAGATGTAGGTGATAAG ]
[+] EMBL CD114107 [ AGTAGTTGTTGTAGTATTATACAGTAGTTGGACAGTGAACACCTTTTGCTTTATAACATGTTTGTGGAATGAATAACTCATGTTCCCAAAGAAAATCACTTGAATGATCAGTAGATAGGTCAGTGATCAAATTGTCTACTGGTTTCCCTTCATTCATACCGATAACATTTTCATCAACATCATCGAAATCTGAGAAGCTGCTAATCATGTTACTGCCACCGCCACCAACAAATCCAGGGTCAAATAAATTGTCTGGAAATGCAAGTCTAGGAGTGACTTTACCAGCATTGTATTCTGTATCAACATTACTACTATTAGATGTAGGTGATAAGATTAAGTTGGAGCATGGTATAGCAGTTTGCGATGGTATAGGTTTTTTTATACCACTACATGCATTCCCAGGCAATCTATCACTTGAAACCCATCGGTTGTCTGTAATGGGATGAAAATTATCATTTCGTACGGCGAGAATGGCAACTGATGAAGTGTGATTAAGATAGGGATCATATACGGTTGGTATAGTTGGTGATATTTGTTTTGAGTCGACCTACCTGCTACGATGTATAAATTGATTACAGTGTCCTTCGCTATTGTACTCCTGTGAAATAACAGATTG ]
[+] EMBL CD062719 [ GCTAATCATGTTACTGCCACCACCACCAACAAATCCTTAGTCAAATAAATTGTCTGGAAATGCAAGTCTAGGAGTGACTTTACCAGCATTGTATTCTGTATCAACATTACTACTATTAGATGTAGGTGATAAGATTAAGTTGGAGCATGGTATAGCAGTTTGCGATGGTATAGGTTTTTTTATACCACTACATGCATTCCCAGGCAATCTATCACTTGAAACCCATCGGTTGTCTGTAATGGGATGAAAATTATCATTTCGTACGGGGAGAATGGCAACTGATGAAGTTTGATTAGGATAGGGATCATATACGGTTGGTATTGTTGGTGATTTTTGTTTTGAGTCGAAAAACCGGTTACGAGGTATAAATTGATTACAGTGTCCTTCGCTATCGAACTCATGTGAAATAACAGATTGTAGAACATGTTTACCATATGAATGCAACTTCGGGATCCATGCGTAACTCTGAACTTGTTCTGTCTCGTTTAAGTGCTGGATATAATAATGTAC]
consensusID : consensus_9028#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[ATATGGGATCATATACGGTTGGTATTGTTGGTGATTTTTGTTTTGAGTCGAAAAACCGGTTACGAGGTATAAATTGATTACAGTGTCCTTCGCTATCGAACTCATGTGAAATAACAGATTGTAGAACATGTTTACCATATGATCTTCTCACTTCAGTATTGGAAATATTTAAGTCCACTTCATGGTCCCATGCTAAATCAAAGGCTGAATCCATATCGGGTGACTCAAATTGAATATTTGACACTGAAGACTTATCCATATCTGATGAAACAGTCTGTGGAGTAGAACGCAGTCTTAAAACAGTGGGACGTCTGAGAGGTGTCGACTTTGAACAGGATTTGCTTCCAGTCTTTTCATTAGAACCGATAGATTTACCATATTTGGTTTTATTATGATCCCACAATCGCCTAGCCAGACGAGCGAGTTCCAATCCATCAACTTCTTCTA]
[+] EMBL CD197685 [ATATGGGATCATATACGGTTGGTATTGTTGGTGATTTTTGTTTTGAGTCGAAAAACCGGTTACGAGGTATAAATTGATTACAGTGTCCTTCGCTATCGAACTCATGTGAAATAACAGATTGTAGAACATGTTTACCATATGATCTTCTCACTTCAGTATTGGAAATATTTAAGTCCACTTCATGGTCCCATGCTAAATCAAAGGCTGAATCCATATCGGGTGACTCAAATTGAATATTTGACACTGAAGACTTATCCATATCTGATGAAACAGTCTGTGGAGTAGAACGCAGTCTTAAAACAGTGGGACGTCTGAGAGGTGTCGACTTTGAACAGGATTTGCTTCCAGTCTTTTCATTAGAACCGATAGATTTACCATATTTGGTTTTATTATGATCCCACAATCGCCTAGCCAGACGAGCGAGTTCCAATCCATCAACTTCTTCTA]
consensusID : consensus_9028#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence
[CTGATGAAGTTTGATTAGGATAGGGATCATATACGGTTGGTATTGTTGGTGATTTTTGTTTTGAGTCGAAAAACCGGTTACGAGGTATAAATTGATTACAGTGTCCTTCGCTATCGAACTCATGTGAAATAACAGATTGTAGAACATGTTTACCATATGATCTTCTCACTTCAGTATTGGAAATATTTAAGTCCACTTCATGGTCCCATGCTAAATCAAAGGCTGAATCCATATCGGGTGACTCAAATTGAATATCTAACGTTTTTCCAAAGCATTGTTATTTTTAAAAGCAAAGAGGAATGATTGGGATATAAAACATAATAAACAAAAAATATGGGATTATTATTAGTACCAAGCAACTGAAAACTAATTACAAAACAGAAACTATGTGGTAAGTAAACAAAAAT]
[-] EMBL CD185762 [CTGATGAAGTTTGATTAGGATAGGGATCATATACGGTTGGTATTGTTGGTGATTTTTGTTTTGAGTCGAAAAACCGGTTACGAGGTATAAATTGATTACAGTGTCCTTCGCTATCGAACTCATGTGAAATAACAGATTGTAGAACATGTTTACCATATGATCTTCTCACTTCAGTATTGGAAATATTTAAGTCCACTTCATGGTCCCATGCTAAATCAAAGGCTGAATCCATATCGGGTGACTCAAATTGAATATCTAACGTTTTTCCAAAGCATTGTTATTTTTAAAAGCAAAGAGGAATGATTGGGATATAAAACATAATAAACAAAAAATATGGGATTATTATTAGTACCAAGCAACTGAAAACTAATTACAAAACAGAAACTATGTGGTAAGTAAACAAAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9028#1 ------------------------------------------------------------
consensus_9028#2 ------------------------------------------------------------
consensus_9028#0 AAACACAAGCAAGTCAATCAAATGCAAGTAGTTTTGATTAAGGTAAGTAAATAGGATTTA 60
consensus_9028#1 ------------------------------------------------------------
consensus_9028#2 ------------------------------------------------------------
consensus_9028#0 TGTAGGAGATAAAAAAGATGCGACAATAACAAAAAGAATTGGAAAGAGAGAGAAGCGATA 120
consensus_9028#1 ------------------------------------------------------------
consensus_9028#2 ------------------------------------------------------------
consensus_9028#0 GAACAACTGATTATATTTATTGGCTAGGGTGGCAAATTAAAAGAAAACAAAATAACCGGT 180
consensus_9028#1 ------------------------------------------------------------
consensus_9028#2 ------------------------------------------------------------
consensus_9028#0 TTGATAAAACATTTTTTGAAAATTAAAGGAAGAATTTAAAAAGCGAAAAATTTATCAATC 240
consensus_9028#1 ------------------------------------------------------------
consensus_9028#2 ------------------------------------------------------------
consensus_9028#0 AATAAAGAGTATAAATTAATTTTTCACACCTTCATTATTTGATATAATGACAAAAACAAT 300
consensus_9028#1 ------------------------------------------------------------
consensus_9028#2 ------------------------------------------------------------
consensus_9028#0 GAATTGATAANNNAACAAGGCGAAAAGAAGAATAAATATTCTGAATGAACATTAAGGTTA 360
consensus_9028#1 ------------------------------------------------------------
consensus_9028#2 ------------------------------------------------------------
consensus_9028#0 TGATAAATAATCAATTTAATCCAATAAATCCTCTTCTACTTTATTCATGTGAAGTTTCGT 420
consensus_9028#1 ------------------------------------------------------------
consensus_9028#2 ------------------------------------------------------------
consensus_9028#0 TGCTTTGTTTTAATTTTATTTTAAAAATAAACATAATTGCAATTATCATAGTTGTTACAA 480
consensus_9028#1 ------------------------------------------------------------
consensus_9028#2 ------------------------------------------------------------
consensus_9028#0 GTAGAACTTGATAGTAGTAGTAGTTGTTGTAGTATTATACAGTAGTTGGACAGTGAACAC 540
consensus_9028#1 ------------------------------------------------------------
consensus_9028#2 ------------------------------------------------------------
consensus_9028#0 CTTTTGCTTTATAACATGTTTGTGGAATGAATAACTCATGTTCCCAAAGAAAATCACTTG 600
consensus_9028#1 ------------------------------------------------------------
consensus_9028#2 ------------------------------------------------------------
consensus_9028#0 AATGATCAGTAGATAGGTCAGTGATCAAATTGTCTACTGGTTTCCCTTCATTCATACCGA 660
consensus_9028#1 -------------------------ATATGGGATCATA-TACGGTTGGTATTGTTGGTGA 34
consensus_9028#2 ------CTGATGAAGTTTGATTAGGATA-GGGATCATA-TACGGTTGGTATTGTTGGTGA 52
consensus_9028#0 TAACATTTTCATCAACATCATCGAAATCTGAGAAGCTGCTAATCATGTTACTGCCACCGC 720
** * ** * ** ** ** ** *
consensus_9028#1 TTTTTG----TTTTGAGTCGAAAAACCGGTTACGAGGTATAAATTGATTACAGTGTCCTT 90
consensus_9028#2 TTTTTG----TTTTGAGTCGAAAAACCGGTTACGAGGTATAAATTGATTACAGTGTCCTT 108
consensus_9028#0 CACCAACAAATCCAGAGTCAAATAAATTGTCTGGAAATGCAAGTCTAGGAGTGACTTTAC 780
* ***** ** ** ** ** * ** * * * * *
consensus_9028#1 CGCTATCGAACTC-ATGTGAA-ATAACAGATTGTAGAACATGTTTACCATATGATCTT-- 146
consensus_9028#2 CGCTATCGAACTC-ATGTGAA-ATAACAGATTGTAGAACATGTTTACCATATGATCTT-- 164
consensus_9028#0 CAGCATTGTATTCTGTATCAACATTACTACTATTAGATGTAGGTGATAAGATTAAGTTGG 840
* ** * * ** * * ** ** ** * **** * * * * ** * **
consensus_9028#1 --CTCACTTCAGTA-TTGGAAATATTTAAGTCCACTTCATGGTCCCATGCTAAATCAAAG 203
consensus_9028#2 --CTCACTTCAGTA-TTGGAAATATTTAAGTCCACTTCATGGTCCCATGCTAAATCAAAG 221
consensus_9028#0 AGCATGGTATAGCAGTTTGCGATGGTATAGGTTTTTTTATACCACTACATGCATTCCCAG 900
* * ** * ** * ** * ** ** ** * * * ** **
consensus_9028#1 GCTGAATCCATATCGGGTGACTCAAATTGAATATTTGACACTG----AAGACTTATCCAT 259
consensus_9028#2 GCTGAATCCATATCGGGTGACTCAAATTGAATATCTAACGTTTTTCCAAAGCATTGTTAT 281
consensus_9028#0 GC--AATC--TATCACTTGAAACCCATCGGTTGTCTGTAATGGGATGAAAA--TTATCAT 954
** **** **** *** * ** * * * * ** * **
consensus_9028#1 ATCTGATGAAACAGTCTGTGGAGTAGAACGCAGTCTTAAAACAGTGGG-ACGTCTGAGAG 318
consensus_9028#2 TTTTAAAAGCAAAGAGGAATGATTGGGATATAAAACATAATAAACAAA-AAATATGGGAT 340
consensus_9028#0 TTCGTACGGCGAGAATGGCAACTGATGAAGTGTGATTAAGATAGGGATCATATACGGTTG 1014
* * * * * * * *
consensus_9028#1 GTGTCGACTTTGAACAGGATTTGCTTCCAGTCTTTTCATTAGAACCGATAGATTTACCAT 378
consensus_9028#2 -TATTATTAGTACCAAGCAACTGAAAACTAATTACAAAACAGAAACTATGTGGTAAGTAA 399
consensus_9028#0 GTATAGTTGGTGATATTTGTTTTGAGTCGACCTACCTGCTACGATGTATAAATTGATTAC 1074
* * * * * * * * ** * * *
consensus_9028#1 ATTTGGTTTTATTATGATCCCACAATCGCCTAGCCAGACGAGCGAGTTCCAATCCAT-CA 437
consensus_9028#2 ACAAAAAT---------------------------------------------------- 407
consensus_9028#0 AGTGTCCTTCGCTATTGTACTCCTGTGAAATAACAGATTGTAGAACATGTTTACCATATG 1134
* *
consensus_9028#1 ACTTCTTCTA-------------------------------------------------- 447
consensus_9028#2 ------------------------------------------------------------
consensus_9028#0 AATGCAACTTCGGGATCCATGCGTAACTCTGAACTTGTTCTGTCTCGTTTAAGTGCTGGA 1194
consensus_9028#1 -------------
consensus_9028#2 -------------
consensus_9028#0 TATAATAATGTAC 1207
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||