cluster # 9031

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Schistosoma mansoni
cluster # 9031 cluster # 9031 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9031#0 length = 543 sequences # 5

consensus_9031#1 length = 507 sequences # 2
consensus_9031#2 length = 265 sequences # 1

consensusID : consensus_9031#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 543
fasta sequence

                              [AGACTTGCGCCTTTCTAGATAGCGGATCAAATACCTCTCTCATTGCTGATGATCTGGCTGATGAGTTAGGCCTCGAGGGAAAACCGAAAATGGTGTCTCTAAAGACTCTTAGTAATGAATCGTCATTGATATCCAAAGAGGTCGATGTAGAGTTGCACTCGATAGATTTCTCATCATCTGTTAAGGTGCTGAAAGTGTTGACTGTTAAGAAACTACCGGCGGTTTACAGGACTGTGCCAACGGTGCATCAAATGGCATCCTGGTCTCATTTAAAAGACACAAGTTTTCCGAGAGTAGAAGACGAGAATGTCAAACTGTTGATTGGGTGTAACGCTCCGGGCGTACACGAGATAAAAGAGAAGATAATGGTGTATGGTATGAACATGTAAAAACTGATGGTACACGAGTCCTAAAAGCTAATAATGATCCACGAAATATTGCTAGAACTACACTTGATTCAGTAGTTATTGCTAAACGTATACGTATTTACCCTTATAGTCATCGGTCAAGGCAACAAGTTTGCTTGCGATTTGCATTGTATGG]

[+] EMBL CD063121             [AGACTTGCGCCTTTCTAGATAGCGGATCAAATACCTCTCTCATTGCTGATGATCTGGCTGATGAGTTAGGCCTCGAGGGAAAACCGAAAATGGTGTCTCTAAAGACTCTTAGTAATGAATCGTCATTGATATCCAAAGAGGTCGATGTAGAGTTGCACTCGATAGATTTCTCATCATCTGTTAAGGTGCTGAAAGTGTTGACTGTTAAAAAACTACCGGCGGTTTACAGGACTGTGCCAACGGTGCATCAAATG                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD149818             [                                                                                        AATGGTGTCTCTAAAGACTCTTAGTAATGAATCGTCATTGATATCCAAAGAGGTCGATGTAGAGTTGCACTCGATAGATTTCTCATCATCTGTTAAGGTGCTGAAAGTGTTGACTGTTAAGAAACTACCGGCGGTTTACAGGACTGTGCCAACGGTGCATCAAATGGCATCCTGGTCTCATTTAAAAGACACAAGTTTTCCGAGAGTAGAAGACGAGAATGTCAAACTGTTGATTGGGTGTAACGCTCC                                                                                                                                                                                                              ]
[-] EMBL CD149851             [                                                                                        AATGGTGTCTCTAAAGACTCTTAGTAATGAATCGTCATTGATATCCAAAGAGGTCGATGTAGAGTTGCACTCGATAGATTTCTCATCATCTGTTAAGGTGCTGAAAGTGTTGACTGTTAAGAAACTACCGGCGGTTTACAGGACTGTGCCAACGGTGCATCAAATGGCATCCTGGTCTCATTTAAAAGACACAAGTTTTCCGAGAGTAGAAGACGAGAATGTCAAACTGTTGATTGGGTGTAACGCTCC                                                                                                                                                                                                              ]
[-] EMBL CD149799             [                                                                                        AATGGTGTCTCTAAAGACTCTTAGTAATGAATCGTCATTGATATCCAAAGAGGTCGATGTAGAGTTGCACTCGATAGATTTCTCATCATCTGTTAAGGTGCTGAAAGTGTTGACTGTTAAGAAACTACCGGCGGTTTACAGGACTGTGCCAACGGTGCATCAAATGGCATCCTGGTCTCATTTAAAAGACACAAGTTTTCCGAGAGTAGAAGACGAGAATGTCAAACTGTTGATTGGGTGTAACGCTCC                                                                                                                                                                                                              ]
[+] EMBL CD187648             [                                                                                          TGGTGTCTCTAAAGACTCTTAGTAATGAATCGTCATTGATATCCAAAGAGGTCGATGTAGAGTTGCACTCGATAGATTTCTCATCATCTGTTAAGGTGCTGAAAGTGTTGACTGTTAAGAAACTACCGGCGGTTTACAGGACTGTGCCAACGGTGCATCAAATGGCATCCTGGTCTCATTTAAAAGACACAAGTTTTCCGAGAGTAGAAGACGAGAATGTCAAACTGTTGATTGGGTGTAACGCTCCGGGCGTACACGAGATAAAAGAGAAGATAATGGTGTATGGTATGAACATGTAAAAACTGATGGTACACGAGTCCTAAAAGCTAATAATGATCCACGAAATATTGCTAGAACTACACTTGATTCAGTAGTTATTGCTAAACGTATACGTATTTACCCTTATAGTCATCGGTCAAGGCAACAAGTTTGCTTGCGATTTGCATTGTATGG]




>consensus_9031#0
AGACTTGCGCCTTTCTAGATAGCGGATCAAATACCTCTCTCATTGCTGATGATCTGGCTG
ATGAGTTAGGCCTCGAGGGAAAACCGAAAATGGTGTCTCTAAAGACTCTTAGTAATGAAT
CGTCATTGATATCCAAAGAGGTCGATGTAGAGTTGCACTCGATAGATTTCTCATCATCTG
TTAAGGTGCTGAAAGTGTTGACTGTTAAGAAACTACCGGCGGTTTACAGGACTGTGCCAA
CGGTGCATCAAATGGCATCCTGGTCTCATTTAAAAGACACAAGTTTTCCGAGAGTAGAAG
ACGAGAATGTCAAACTGTTGATTGGGTGTAACGCTCCGGGCGTACACGAGATAAAAGAGA
AGATAATGGTGTATGGTATGAACATGTAAAAACTGATGGTACACGAGTCCTAAAAGCTAA
TAATGATCCACGAAATATTGCTAGAACTACACTTGATTCAGTAGTTATTGCTAAACGTAT
ACGTATTTACCCTTATAGTCATCGGTCAAGGCAACAAGTTTGCTTGCGATTTGCATTGTA
TGG

consensusID : consensus_9031#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 507
fasta sequence

                              [CACATTTAGTCATTATTAGTGTTATATTTACAGCTGGACGTGGTGATGGAAATGTAAAAGAATATATGCCAAATTTTGTTTTACGTTATCAACGGGAAGATAATGGTGTATGGTATGAACATGTAAAAACTGATGGTACACGAGTCCTAAAAGCTAATAATGATCCACGAAATATTGCTAGAACTACACTTGATTCAGTAGTTATTGCTAAACGTATACGTATTTACCCTTATAGTCATCGGTCAAGGCAACAAGTTTGCTTGCGATTTGCATTGTATGGATGTAATTTCCCAGATGGTGTCATATCTTATTCAATGCCTCAAGGTGATACTATCACATATGGTCGACAATTATTATTCGGTTCACCTTATTCTACTATTCCACAAAATTTTCAAGATTTAACTTATGATGGTCAATTGATTGAATTAGAAAATCAATTAGTCGGTGGTATAGGTCAATTAATGGATAATATTGCCTATTTAGGCAATGTTACTCAACATTCAGATT]

[-] EMBL CD189927             [CACATTTAGTCATTATTAGTGTTATATTTACAGCTGGACGTGGTGATGGAAATGTAAAAGAATATATGCCAAATTTTGTTTTACGTTATCAACGGGAAGATAATGGTGTATGGTATGAACATGTAAAAACTGATGGTACACGAGTCCTAAAAGCTAATAATGATCCACGAAATATTGCTAGAACTACACTTGATTCAGTAGTTATTGCTAAACGTATACGTATTTACCCTTATAGTCATCGGTCAAGGCAACAAGTTTGCTTGCGATTTGCATTGTATGGA                                                                                                                                                                                                                                  ]
[-] EMBL CD184658             [                                                                          TTTGTTTTACGTTACCAACGGGAAGATAATGGTGTATGGTATGAACATGCAAAAACTGATGGTACACGAGTCCTAAAAGCTAATAATGATCCACGAAATATTGCTAGAACTACACTTGATTCAGTAGTTATTGCTAAACGTATACGTATTTACCCTTATAGTCATCGGTCAAGGCAACAAGTTTGCTTGCGATTTGCATTGTATGGATGTAATTTCCCAGATGGTGTCATATCTTATTCAATGCCTCAAGGTGATACTATCACATATGGTCGACAATTATTATTCGGTTCACCTTATTCTACTATTCCACAAAATTTTCAAGATTTAACTTATGATGGTCAATTGATTGAATTAGAAAATCAATTAGTCGGTGGTATAGGTCAATTAATGGATAATATTGCCTATTTAGGCAATGTTACTCAACATTCAGATT]




>consensus_9031#1
CACATTTAGTCATTATTAGTGTTATATTTACAGCTGGACGTGGTGATGGAAATGTAAAAG
AATATATGCCAAATTTTGTTTTACGTTATCAACGGGAAGATAATGGTGTATGGTATGAAC
ATGTAAAAACTGATGGTACACGAGTCCTAAAAGCTAATAATGATCCACGAAATATTGCTA
GAACTACACTTGATTCAGTAGTTATTGCTAAACGTATACGTATTTACCCTTATAGTCATC
GGTCAAGGCAACAAGTTTGCTTGCGATTTGCATTGTATGGATGTAATTTCCCAGATGGTG
TCATATCTTATTCAATGCCTCAAGGTGATACTATCACATATGGTCGACAATTATTATTCG
GTTCACCTTATTCTACTATTCCACAAAATTTTCAAGATTTAACTTATGATGGTCAATTGA
TTGAATTAGAAAATCAATTAGTCGGTGGTATAGGTCAATTAATGGATAATATTGCCTATT
TAGGCAATGTTACTCAACATTCAGATT

consensusID : consensus_9031#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 265
fasta sequence

                              [GACGTAAGTTTTCCGAGAGTAGAAAACGAGAATGTCAAACTGTTGATTGGGTGTAATGTACCGAATGTACACGAGATGAAAGAGATAAGAACCGGAAATACGAATGAACCGTCTGCCGTGAGGACTCTATTGGGTTGGACGCTGTTCGGTCCCTACGGGGAACTTCATGAGAACAGCCGTGTACTTAATTACCTCTCAGACAAAGAGGAATTAGAGGATAAGTTTGAACAATTGTACTTAACTGAATTCAAAGATTCATTTAGTT]

[+] EMBL CD192198             [GACGTAAGTTTTCCGAGAGTAGAAAACGAGAATGTCAAACTGTTGATTGGGTGTAATGTACCGAATGTACACGAGATGAAAGAGATAAGAACCGGAAATACGAATGAACCGTCTGCCGTGAGGACTCTATTGGGTTGGACGCTGTTCGGTCCCTACGGGGAACTTCATGAGAACAGCCGTGTACTTAATTACCTCTCAGACAAAGAGGAATTAGAGGATAAGTTTGAACAATTGTACTTAACTGAATTCAAAGATTCATTTAGTT]




>consensus_9031#2
GACGTAAGTTTTCCGAGAGTAGAAAACGAGAATGTCAAACTGTTGATTGGGTGTAATGTA
CCGAATGTACACGAGATGAAAGAGATAAGAACCGGAAATACGAATGAACCGTCTGCCGTG
AGGACTCTATTGGGTTGGACGCTGTTCGGTCCCTACGGGGAACTTCATGAGAACAGCCGT
GTACTTAATTACCTCTCAGACAAAGAGGAATTAGAGGATAAGTTTGAACAATTGTACTTA
ACTGAATTCAAAGATTCATTTAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9031#0      AGACTTGCGCCTTTCTAGATAGCGGATCAAATACCTCTCTCATTGCTGATGATCTGGCTG 60
consensus_9031#1      ---------CACATTTAGTCATTATTAGTGTTATATTTACAGCTGGACGTGGTGATGGAA 51
consensus_9031#2      ------------------------------------------------------------
                                                                                  

consensus_9031#0      ATGAGTTAGGCCTCGAGGGAAAACCGAAAATGGTGTCTCTAAAGACTCTTAGTAATGAAT 120
consensus_9031#1      ATGTAAAAGAATATATGCCAAATTTTGTTTTACGTTATCAACGGGAAGATAATGGTGTAT 111
consensus_9031#2      ------------------------------------------------------------
                                                                                  

consensus_9031#0      CGTCATTGATATCCAAAGAGGTCGATGTAGAGTTGCACTCGATAGATTTCTCATCATCTG 180
consensus_9031#1      GGT-ATGAACATGTAAAAA--CTGATG-GTACACGAGTCCTAAAAGCTAATAATGATCCA 167
consensus_9031#2      ------------------------------------------------------------
                                                                                  

consensus_9031#0      TTAAGG--TGCTGAAAGTG---TTGACTGTTAAGAAACTACCGGCGGTTTACAGGACTGT 235
consensus_9031#1      CGAAATATTGCTAGAACTACACTTGATTCAGTAGTTATTGCTAAACGTATACGTATTTAC 227
consensus_9031#2      ------------------------------------------------------------
                                                                                  

consensus_9031#0      GCCAACGGTGCATCAAATGGCATCCTGGTCTCATTTAAAAGACACAAGTTTTCCGAGAGT 295
consensus_9031#1      CCTTATAGT-CATCGGTCAAGGCAACAAGTTTGCTTGCGATTTGCA--TTGTATGGATGT 284
consensus_9031#2      ----------------------------------------GACGTAAGTTTTCCGAGAGT 20
                                                                   *  ** *  *   **

consensus_9031#0      AGAAGACGAGAATGTCAAACTGTTGATTGGGTGTAACGCTCCGGGCGTACACGAGATAAA 355
consensus_9031#1      AATTTCCCAGATGGTGTCATATCTTATT-----CAATGCCTCAAGGTGATACTATCACAT 339
consensus_9031#2      AGAAAACGAGAATGTCAAACTGTTGATTGGGTGTAATGTACCGAATGTACACGAGATGAA 80
                      *     * ***  **   *    * ***      ** *   *      * ** *    * 

consensus_9031#0      AGAGAAGATAATGGTGTATGGTATGAACATGTAAAAACTGATGGTACACGAGTCCTAAAA 415
consensus_9031#1      ATGGTCGACAATTATTATTCGGTTCACCTTATTCTA--CTATTCCACAAAATTTTCAAGA 397
consensus_9031#2      AGAGATAAGAACCGGAAATACGAATGAACCGTCTGCCGTGAGGACTCTATTGGGTTGGAC 140
                      *  *   * **       *            *        *     *             

consensus_9031#0      GCTAA-TAATGATCCACGAAATATTGCTAGAACTAC--ACTTGATTCAGTAGTTATTGCT 472
consensus_9031#1      TTTAACTTATGATGGTCA----ATTGATTGAATTAG--A--AAATCAATTAGTCGGTGGT 449
consensus_9031#2      GCTGTTCGGTCCCTACGGGGAACTTCATGAGAACAGCCGTGTACTTAATTACCTCTCAGA 200
                        *      *             **  *   *  *         *  * **         

consensus_9031#0      AAACGTATACGTATTTACCCTTATAGTCATCGGTCAAGGCAACAAGTTTGCTTGCGATTT 532
consensus_9031#1      ATAGGTC----AATTAATGGATAATATTGCCTATTTAGGCAATG---TTACTCAACATTC 502
consensus_9031#2      CAAAGAG---GAATTAGAGGATAAGTTTGAACAATTGTACTTAACTGAATTCAAAGATTC 257
                        * *       ***      **   *            *                *** 

consensus_9031#0      GCATTGTATGG 543
consensus_9031#1      AGATT------ 507
consensus_9031#2      ATTTAGTT--- 265
                         *