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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 597 fasta sequence
[TAAATTAGAAAGTCGAGGTGAAGAATTACGTGAATTACAAAAAGCATTAAAAGCACGTGCTGATGAACTTAGTGAAATGTCTGTACGTGTTAGTTTAGCTGAGAAAAAGTTAGAAACCGCAGGAAAATCGAATGAAGAGAAAATTTCCCGATTAGAACTACGTTTAGAACAATCAGAATCTCAACAGAAACGTAATGAAAAAGAATATGAACAAACATTAGATGCACTTCATGCGGATATTGAGGCTTTGGAACAAGAAAAAGCACATCTTAAAGAAAAATTGAAAACACTTAGCAAAAAAGCTTTATTTGAAGGAATTATTAAATCACCACTGCTTGCAAGCACAACGCAATCTAAAGCGCAGCCTTGAACAACAGGCTCTACCACTACTACTACTTCAGCTACTACACCTGGTAGACAAACTTCAGTCGAATGTGCATCACCTTCACCTGGTCCAGCTCGTTTGGCTGCTTACCGAGATGCTTGATTAATGGCAATGGAGATTGAAGCTCTCCGTGAAGCTATTCGACGTTTATCTTCTGAAGTATCCAGACTTCGTGGTGAGAAAATGCTTGAACAACTTAAGAACTTGGGTAC]
[+] EMBL AI975394 [TAAATTAGAAAGTCGAGGTGAAGAATTACGTGAATTACAAAAAGCATTAAAAGCACGTGCTGATGAACTTAGTGAAATGTCTGTACGTGTTAGTTTAGCTGAGAAAAAGTTAGAAACCGCAGGAAAATCGAATGAAGAGAAAATTTCCCGATTAGAACTACGTTTAGAACAATCAGAATCTCAACAGAAACGTAATGAAAAAGAATATGAACAAACATTAGATGCACTTCATGCGGATATTGAGGCTTTGGAACAAGAAAAAGCACATCTTAAAGAAAAATTGAAAACACTTAGCAAAAAAGCTTTATTTGAAGGAATTATTAAATCACCACTGCTTGCAAGCACAACGCAATCTAAAGCGCAGCCTTGAACAACAGGCTCTACCACTACTACTACTTCAGCTACTACACCTGGTAGACAAACTTCAGTCGAAT ]
[+] EMBL CD178584 [ AAACGTAATGAAATAGAGTATGATCAATCATTAAATGCACTTCAAGCGGATATTGAGGCTTTGGAACAAGAAAAAGCAGATCTTAAAGAAAAATTGAAAACACTTAGTAAAAAAGCTTTATTTGAAGGAATTATTAAATCACCACTGCTTCCAAGCGCAACGCAATCTAAAGCGCAGCCTTCAACAACAAGCTCTACCACTACTACTACTTCAGCTCCTGCACCTGGTAGACAAACTTCAGTCGAATGTGCATCACCTTCACCTGGTCCAGCTCGTTTGGCTGCTTACCGAGATGCTTGATTAATGGCAATGGAGATTGAAGCTCTCCGTGAAGCTATTCGACGTTTATCTTCTGAAGTATCCAGACTTCGTGGTGAGAAAATGCTTGAACAACTTAAGAACTTGGGTAC]
consensusID : consensus_9032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence
[GCTCTGATGACACAACACCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCACGATCGAAACTCCTCTTCTCCAGGTGTCGTCGATTCGCCCAGTGGTCCGAGAGTGGTTCGTCTTCTCCTCCTTCGTTTCTCCTGAGGGGCAACTACACCCTGTTTGTCCGTCACGTTCACCATNACTCCTCTTCTCCNAGGTGTACGTCCNGATTCGCGCCAGGTGGTCCGAGAGTGGANTTCTGTGCGTTGGTANNCGGGTGAATNNTCATTGTCGTCGTCGGACTGGGACTTGGTGCAAGGTGGTGGTCGACACTGAAGAGCGATACAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGA]
[+] EMBL CD134442 [GCTCTGATGACACAACACCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCACGATCGAAACTCCTCTTCTCCAGGTGTCGTCGATTCGCCCAGTGGTCCGAGAGTGGTTCGTCTTCTCCTCCTTCGTTTCTCCTGAGGGGCAACTACACCCTGTTTGTCCGTCACGTTCACCATNACTCCTCTTCTCCNAGGTGTACGTCCNGATTCGCGCCAGGTGGTCCGAGAGTGGANTTCTGTGCGTTGGTANNCGGGTGAATNNTCATTGTCGTCGTCGGACTGGGACTTGGTGCAAGGTGGTGGTCGACACTGAAGAGCGATACAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGA]
consensusID : consensus_9032#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence
[CGTTCTCTATTTGTTTAATAGTGTTGCTGATTTTTTTCTGTTGTTGGTTAGATAATGTTTAACGGGAAGTCTGTGTATGCTGCTGCAATGCCCAGTAGCTTTAGTGACTCTGTTCTACTCAGGAGTTCTTCAAAGTGTCCTACCTATCTTGTTCCACTGCTCTTCAGCCTCAGTGATTGGTGCTCCTTTGTTTTTTTGACTGGTTGCTCTGATCTACTATATTTTTTGCAAACATCCTGGTTGTATCACATAGTTCTTTCATATCTCCTTATCTTGCAGCCTGTCCTACTTTGATTGCCAGGTTTTCTACATATTTCCACTTGTCTATTGCCATGCTCTTTTTTACTCGTTTGTTTGCTTCCATATATT]
[+] EMBL CD061105 [CGTTCTCTATTTGTTTAATAGTGTTGCTGATTTTTTTCTGTTGTTGGTTAGATAATGTTTAACGGGAAGTCTGTGTATGCTGCTGCAATGCCCAGTAGCTTTAGTGACTCTGTTCTACTCAGGAGTTCTTCAAAGTGTCCTACCTATCTTGTTCCACTGCTCTTCAGCCTCAGTGATTGGTGCTCCTTTGTTTTTTTGACTGGTTGCTCTGATCTACTATATTTTTTGCAAACATCCTGGTTGTATCACATAGTTCTTTCATATCTCCTTATCTTGCAGCCTGTCCTACTTTGATTGCCAGGTTTTCTACATATTTCCACTTGTCTATTGCCATGCTCTTTTTTACTCGTTTGTTTGCTTCCATATATT]
consensusID : consensus_9032#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence
[CGACATGAAGAGCGATCAACTGGAGTCGGCGACTCGTCCACCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGTGTGTGATGAATCTGAGGGTGTNGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGGTGTGATATGGG]
[+] EMBL CD180106 [CGACATGAAGAGCGATCAACTGGAGTCGGCGACTCGTCCACCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGTGTGTGATGAATCTGAGGGTGTNGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGGTGTGATATGGG]
consensusID : consensus_9032#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence
[GAAGATCAAAGAACACACTACGCCGAGAAATAGAGACAGACATGAGAAGAACGAATAAAAACTGGATGGAGCTAGAAAAGAACGCCCATGACAGAGTGGGTTGGAGAATGCTGGTCGGCAGCTTATGCTCCATTGGGAGTAACAGGCGTAAGTAAGTAAGTAAACTTAAATATTCTAAAGTGCTAGTTCTTTTTTTTTATTTTTTTGTTTTTTTTTGTCTTTGTTACTAAGACGGGTACAATCACGTGTTATCGGTTTTACAAAATGTAATTTTTTTACTTCTTCAATGTATACAACAATAATACTACTAATAATAGTAATAGTAATAATGATTGAATAATAAAAA]
[+] EMBL CD145843 [GAAGATCAAAGAACACACTACGCCGAGAAATAGAGACAGACATGAGAAGAACGAATAAAAACTGGATGGAGCTAGAAAAGAACGCCCATGACAGAGTGGGTTGGAGAATGCTGGTCGGCAGCTTATGCTCCATTGGGAGTAACAGGCGTAAGTAAGTAAGTAAACTTAAATATTCTAAAGTGCTAGTTCTTTTTTTTTATTTTTTTGTTTTTTTTTGTCTTTGTTACTAAGACGGGTACAATCACGTGTTATCGGTTTTACAAAATGTAATTTTTTTACTTCTTCAATGTATACAACAATAATACTACTAATAATAGTAATAGTAATAATGATTGAATAATAAAAA]
consensusID : consensus_9032#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence
[CAGCTGAGAGGCGGTAAAAATACACACTTCGTCACACAGTGGGTCAATTATGCAGATAACAACATCCTGCCGTCTGTCGCTACCTGGGTATCACAGATCTTGGAGGGCCCAGATTGCAGCCCAATTTAGTGGTTGCGCATTAAAAATTGTCAATTTCATTCCTGGTGTGACTGATAAGGATAAAAAGTTCTTGGAAAAGTTCCCTCCTGCAACTGTCCCGGTTTTCGAAGCTGATGATGGTACATGCCTTTTCGATGTGAATGCCATAGCCTGTTGTTT]
[+] EMBL CD122930 [CAGCTGAGAGGCGGTAAAAATACACACTTCGTCACACAGTGGGTCAATTATGCAGATAACAACATCCTGCCGTCTGTCGCTACCTGGGTATCACAGATCTTGGAGGGCCCAGATTGCAGCCCAATTTAGTGGTTGCGCATTAAAAATTGTCAATTTCATTCCTGGTGTGACTGATAAGGATAAAAAGTTCTTGGAAAAGTTCCCTCCTGCAACTGTCCCGGTTTTCGAAGCTGATGATGGTACATGCCTTTTCGATGTGAATGCCATAGCCTGTTGTTT]
consensusID : consensus_9032#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 162 fasta sequence
[CGGGNATTCGATTGAATGGACTGTGTCCTGGGTACAATCGTATGTTTGGCTGGTTAGTAGCTCGTGTCAATAAAACTTTGGATACAAAAGTTAAACGTCAATTTTTCATTGGTGTATTGGATATTGCAGGTTTTGAGATTTTCACTTTTTTTGGTTCTGANC]
[+] EMBL CD133113 [CGGGNATTCGATTGAATGGACTGTGTCCTGGGTACAATCGTATGTTTGGCTGGTTAGTAGCTCGTGTCAATAAAACTTTGGATACAAAAGTTAAACGTCAATTTTTCATTGGTGTATTGGATATTGCAGGTTTTGAGATTTTCACTTTTTTTGGTTCTGANC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9032#1 ------------------------------------------------------------
consensus_9032#3 ------------------------------------------------------------
consensus_9032#6 ------------------------------------------------------------
consensus_9032#2 ------------------------------------------------------------
consensus_9032#5 ------------------------------------------------------------
consensus_9032#0 TAAATTAGAAAGTCGAGGTGAAGAATTACGTGAATTACAAAAAGCATTAAAAGCACGTGC 60
consensus_9032#4 ------------------------------------------------------------
consensus_9032#1 ------------------------------GCTCTGATGACACAACACCTCAGATTCATC 30
consensus_9032#3 -------------------------------------------------CGACATGAAGA 11
consensus_9032#6 ------------------------------------------------------------
consensus_9032#2 ---------------------------------------------------CGTTCTCTA 9
consensus_9032#5 ------------------------------------------------------------
consensus_9032#0 TGATGAACTTAGTGAAATGTCTGTACGTGTTAGTTTAGCTGAGAAAAAGTTAGAAACCGC 120
consensus_9032#4 ------------------------------------------------------------
consensus_9032#1 ACCGCCTCTATGCACTGGGGTCACGTCACGATCGAAA-CTCCTCTTCTCCAGGTGTCGTC 89
consensus_9032#3 GCGATCAACTGGAGTCGGCGACTCGTC-CACCCGA---CTTGATGATGACAGATGTGA-- 65
consensus_9032#6 ------------------------------------------------------------
consensus_9032#2 TTTGTTTAATAGTGTTGCTGATTTTTTTCTGTTGTTGGTTAGATAATGTTTAACGGGAAG 69
consensus_9032#5 ------------------------------------------------------------
consensus_9032#0 AGGAAAATCGAATGAAGAGAAAATTTCCCGATTAGAACTACGTTTAGAACAATCAGAATC 180
consensus_9032#4 --------------------GAAGATCAAAGAACACACTACGCCGAGAAATAGAGACAGA 40
consensus_9032#1 GATTCGCCCAGTGGTCCGAGAGTGGTTCGTCTTCTCCTCCTTCGTTTCTCCTGAGGGGCA 149
consensus_9032#3 GAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCG 125
consensus_9032#6 ------------------------------------------------------------
consensus_9032#2 TCTGTGTATGCTGCTGCAATGCCCAGTAGCTTTAGTGACTCTGTTCTACTCAGGAGTTCT 129
consensus_9032#5 ------------------CAGCTGAGAGGCGGTAAAAATACACACTTCGTCACACAGTGG 42
consensus_9032#0 TCAACA-GAAACGTAATGAAAAAGAATATGAACAAACATTAGATGCACTTCATGCGGATA 239
consensus_9032#4 CATGAGAAGAACGAATAAAAACTGGATGGAGCTAGAAAAGAACGCCCATGACAGAGTGGG 100
consensus_9032#1 ACTAC-ACCCTGTTTGTCCGTCACGTTCACCATNACTCCTCTTCTCCNAGGTGTACGTCC 208
consensus_9032#3 GTGATGAATCTGAGGGT--GTTGTGTCATCAGAGACAATTTCTGATTACGGTGTA--TCT 181
consensus_9032#6 ----------------------------------------------------------CG 2
consensus_9032#2 TCAAAGTGTCCTACCTATCTTGTTCCACTGCTCTTCAGCCTCAGTGATTGGTGCTCCTTT 189
consensus_9032#5 GTCAATTATGCAGATAACAACATCCTGCCGTCTGTCGCTACCTGGGTATCACAGATCTTG 102
consensus_9032#0 TTGAGGCTTTGGAACAAGAAAAAGCACATCTTAAAGAAAAATTGAAAACACTTAGCAAAA 299
consensus_9032#4 TTGGAGAATGCTGGTCGGCAGCTTATGCTCCATTGGGA-----GTAACAGGCGTAAGTAA 155
consensus_9032#1 NGATTCGCGCCAGGTGGTCCGAGAGTGGANTTCTGTGCGTTGGTANNCGG--GTG--AAT 264
consensus_9032#3 GGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATG-CAAACGA--GTG--AGG 236
consensus_9032#6 GGNATTCGATTGAATGGACTGTGTCCTGGGTACAATCGTATGTTTGGCTG--GTT--AGT 58
consensus_9032#2 GTTTTTTTGACTGGTTGCTCTGATCTACTATATTTTTTGCAAACATCCTG--GTTGTATC 247
consensus_9032#5 GAGGGCCCAGATTGCAGCCCAATTTAGTGGTTGCGCATTAAAAATTGTCA--ATT-TCAT 159
consensus_9032#0 AAGCTTTATTTGAAGGAATTATTAAATCACCACTGCTTGCAAGCACAACGCAATCTAAAG 359
consensus_9032#4 GTAAGTAAACTTAAATATTCTAAAGTGCTAGTTCTTTTTTTTTATTTTTTTGTTTTTTTT 215
*
consensus_9032#1 NNTCATTGTCGTCGTCGGACTGGGAC-TTGGTGCAAGGTGGTGGTCGACACTGAAGA--G 321
consensus_9032#3 GTGTTTTGTCGTCGAGCAGAGATGGT-GTTGTGATGGGTGTGTGATGAATCTGAGGGT-G 294
consensus_9032#6 AGCTCGTGTCAATAAAACTTTGGATA-CAAAAGTTAAACGTCAATTTTTCATTGGTGT-A 116
consensus_9032#2 ACATAGTTCTTTCATATCTCCTTATC-TTGCAGCCTGTCCTACTTTGATTGCCAGGTTTT 306
consensus_9032#5 TCCTGGTGTGACTGATAAGGATAAA---AAGTTCTTGGAAAAGTTCCCTCCTGCAACTGT 216
consensus_9032#0 CGCAGCCTTGAACAACAGGCTCTACCACTACTACTACTTCAGCTACTACACCTGGTAGAC 419
consensus_9032#4 TGTCTTTGTTACTAAGACGGGTACAATCACGTGTTATCGGTTTTACAAAATGTAATTTTT 275
consensus_9032#1 CGATACAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGA---TGACAGATGTGAGA- 377
consensus_9032#3 TNGTGTCATCAGAG---ACAATTTCTGATTACGGTGTATCTG---GGTGTGATATGGG-- 346
consensus_9032#6 TTGGAT-ATTGCAGGTTTTGAGATTTTCACTTTTTTTGGTTC---TGANC---------- 162
consensus_9032#2 CTACATATTTCCACTTGTCTATTGCCATGCTCTTTTTTACTCGTTTGTTTGCTTCCATAT 366
consensus_9032#5 CCCGGTTTTCGAAGCTGATGATGGTACATGCCTTTTCGATGTGAATGCCATAGCCTGTTG 276
consensus_9032#0 AAACTTCAGTCGAATGTGCATCACCTTCACCTGGTCCAGCTCGTTTGGCTGCTTACCGAG 479
consensus_9032#4 TTACTTCTTCAATGTATACAACAATAATACTACTAATAATAGTAATAGTAATAATGATTG 335
consensus_9032#1 ------------------------------------------------------------
consensus_9032#3 ------------------------------------------------------------
consensus_9032#6 ------------------------------------------------------------
consensus_9032#2 ATT--------------------------------------------------------- 369
consensus_9032#5 TTT--------------------------------------------------------- 279
consensus_9032#0 ATGCTTGATTAATGGCAATGGAGATTGAAGCTCTCCGTGAAGCTATTCGACGTTTATCTT 539
consensus_9032#4 AATAATAAAAA------------------------------------------------- 346
consensus_9032#1 ----------------------------------------------------------
consensus_9032#3 ----------------------------------------------------------
consensus_9032#6 ----------------------------------------------------------
consensus_9032#2 ----------------------------------------------------------
consensus_9032#5 ----------------------------------------------------------
consensus_9032#0 CTGAAGTATCCAGACTTCGTGGTGAGAAAATGCTTGAACAACTTAAGAACTTGGGTAC 597
consensus_9032#4 ----------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||