These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9036#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 838 fasta sequence [TGGTGCACATGGGATGAATGGAGTGCCTGGAATTAAGGGAGGATCAGGACCAATTGGGCCAGTAGGTCTGCCGGGAGCAAGTGGAATACCTGGACACGCAGGACCGATGGGACCTATGGGACCAGTTGGCCCAAGAGGACCGACGGGTGCGATAGGACCTGCTGGAGAACAAGGAATGAAAGGTGCAACTGGACTGCCTGGTGGTCATGGAGACAGTGGAGATGTAGGCGACCCTGGCCCTGATGGCGAAACAGGTCCGGAAGGTCCCGCGGGTGCTGTTGGACCCCCAGGACTTCCAGGTCCTGTTGGTGACCAAGGCCCTGAAGGTCCAGAAGGTGCATCTGGTCCACCTGGTCCCGCAGGATATGACGGTCCACCAGGAATGGACGGGAAAGATGGGTTATCTGGCAAAGATGGGAAACCCGGGCCACAAGGTGTACCAGGTGAACAAGGAGCAGTCGGAAAAGCAGGTCGTAGAGGAGATCGTGGACCACCTGGACCACAAGGGAAGAGAGGATACAAAGGTCAAGAGGGAGTAATGGGACCTCCAGGAGTTTATGGTGTTATAGGCTTAATTGGTATTCCTGGATCAAATGGAGAAACTGGAGTAAATGGTACAGTTGGTGATCCTGGTCTTCCTGGTCAACCTGGAACCGACGGACGTCCGGGCTTACGTGGACAACCTGGGTTACGAGGCCCTCCTGGGCTTCCTGGAGTCGTCAAAGTTCAGCCTTCTACCATAGGTGGAACAGGTTTGCCTGGCGATCGTGGAAATCCTGGTTCATATGGACCCACGGGGGAACCCGGCCCTNAAGGAGCGCAGGAGAAAGAGGAATAC] [-] EMBL CD071983 [TGGTGCACATGGGATGAATGGAGTGCCTGGAATTAAGGGAGGATCAGGACCAATTGGGCCAGTAGGTCTGCCGGGAGCAAGTGGAATACCTGGACACGCAGGACCGATGGGACCTATGGGACCAGTTGGCCCAAGAGGACCGACGGGTGCGATAGGACCTGCTGGAGAACAAGGAATGAAAGGTGCAACTGGACTGCCTGGTGGTCATGGAGACAGTGGAGATGTAGGCGACCCTGGCCCTGATGGCGAAACAGGTCCGGAAGGTCCCGCGGGTGCTGTTGGACCCCCAGGACTTCCAGGTCCTGTTGGTGACCAAGGCCCTGAAGGTCCAGAAGGTGCATCTGGTCCACCTGGTCCCGCAGGATATGACGGTCCACCAGGAATGGACGGGAAAGATGGGTTAT ] [-] EMBL CD071980 [ AATTGGGCCAGTAGGTCTGCCGGGAGCAAGTGGAATACCTGGACACGCAGGACCGATGGGACCTATGGGACCAGTTGGCCCAAGAGGACCGACGGGTGCGATAGGACCTGCTGGAGAACAAGGAATGAAAGGTGCAACTGGACTGCCTGGTGGTCATGGAGACAGTGGAGATGTAGGCGAGCCTGGCCCTGATGGCGAAACAGGTCCGGAAGGTCCCGCGGGTGCTGTTGGACCCCCAGGACTTCCAGGTCCTGTTGGTGACCAAGGCCCTGAAGGTCCAGAAGGTGCATCTGGTCCACCTGGTCCCGCAGGATATGACGGTCCACCAGGAATGGACGGGAATGATGGGTTATCTGGCAAAGATGGGAAACCCGGGCCACAAGGTGTACCA ] [+] EMBL CD063749 [ anTGGGA CAGTTGGCCCAAGAGGACCGACGGGTGCGATAGGACCTGCTGGAGAACAAGGAATGAAAGGTGCAACTGGACTGCCTGGTGGTCATGGAGACAGTGGAGATGTAGGCGACCCTGGCCCTGATGGCGAAACAGGTCCGGAAGGTCCCGCGGGTGCTGTTGGACCCCCAGGACTTCCAGGTCCTGTTGGTGACCAAGGCCCTGAAGGTCCAGAAGGTGCATCTGGTCCACCTGGTCCCGCAGGATATGACGGTCCACCAGGAATGGACGGGAAAGATGGGTTATCTGGCAAAGATGGGAAACCCGGGCCACAAGGTGTACCAGGTGAACAAGGAGCAGTCGGAAAAGCAGGTCGTAGAGGAGATCGTGGACCACCTGGACCACAAGGGAAGAGAGGATACAAAGGTCA ] [+] EMBL CD143011 [ GGAAAGATGGGTTATCTGGCAAAGATGGGAAACCCGGGCCACAAGGTGTACCAGGTGAACAAGGAGCAGTCGGAAAAGCAGGTCGTAGAGGAGATCGTGGACCACCTGGACCACAAGGGAAGAGAGGATACAAAGGTCAAGAGGGAGTAATGGGACCTCCAGGAGTTTATGGTGTTATAGGCTTAATTGGTATTCCTGGATCAAATGGAGAAACTGGAGTAAATGGTACAGTTGGTGATCCTGGTCTTCCTGGTCAACCTGGAACCGACGGACGTCCGGGCTTACGTGGACAACCTGGGTTACGAGGCCCTCCTGGGCTTTCTGa ] [+] EMBL CD180775 [ GGAAAGATGGGTTATCTGGCAAAGATGGGAAACCCGGGCCACAAGGTGTACCAGGTGAACAAGGAGCAGTCGGAAAAGCAGGTCGTAGAGGAGATCGTGGACCACCTGGACCACAAGGGAAGAGAGGATACAAAGGTCAAGAGGGAGTAATGGGACCTCCAGGAGTTTATGGTGTTATAGGCTTAATTGGTATTCCTGGATCAAATGGAGAAACTGGAGTA ] [+] EMBL CD067619 [ ACCAGGTGAACAAGGAGCAGTCGGAAAAGCAGGTCGTAGAGGAGATCGTAGACCACCTGGACCACAAGGGAAGAGAGGATACAAAGGTCAAGAGGGAGTAATGGGACCTCCAGGAGTTTATGGTGTTATAGGCTTAATTGGTATTCCTGGATCAAATGGAGAAACTGGAGTAAATGGTACAGTTGGTGATCCTGGTCTTCCTGGTCAACCTGGAACCGACGGACGTCCGGGCTTACGTGGACAACCTGGGTTACGAGGCCCTCCTGGGCTTCCTGGAGTCGTCAAAGTTCAGCCTTCTACCATAGGTGGAACAGGTTTGCCTGGCGATCGTGGAAATCCTGGTTCATATGGACCCA ] [+] EMBL CD143209 [ GATACAAAGGTCAAGAGGGAGTAATGGGACCTCCAGGAGTTTATGGTGTTATAGGCTTAATTGGTATTCCTGGATCAAATGGAGAAACTGGAGTAAATGGTACAGTTGGTGATCCTGGTCTTCCTGGTCAACCTGGAACCGACGGACGTCCGGGCTTACGTGGACAACCTGGGTTACGAGGCCCTCCTGGGCTTCCTGGAGTCGTCAAAGTTCAGCCTTCTACCATAGGTGGAACAGGTTTGCCTGGCGATCGTGGAAATCCTGGTTCATATGGACCCACGGGGGAACCCGGCCCTNAAGGAGCGCAGGAGAAAGAGGAATAC] consensusID : consensus_9036#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence [AACTGGAGTAAATGGTACAGTTGGTGATAATGGTTTTGATGGTCAAAGTGGAACCGACGGACGTCCGGGCTTAAGTGGACAACCTGGGTTAAGAGGCCCTAGTGGGTTTCCTGGAGTTGTCAAAGTTCAGCCTTATACCATAGGTGGAACAGGTTTGCCTGGCGATCGTGGAAATCCATGGTTCATATGGACCCGCGGGGGAACCCGGCCCTAAAGGGAGCAGCAG] [-] EMBL CD093139 [AACTGGAGTAAATGGTACAGTTGGTGATAATGGTTTTGATGGTCAAAGTGGAACCGACGGACGTCCGGGCTTAAGTGGACAACCTGGGTTAAGAGGCCCTAGTGGGTTTCCTGGAGTTGTCAAAGTTCAGCCTTATACCATAGGTGGAACAGGTTTGCCTGGCGATCGTGGAAATCCATGGTTCATATGGACCCGCGGGGGAACCCGGCCCTAAAGGGAGCAGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9036#0 TGGTGCACATGGGATGAATGGAGTGCCTGGAATTAAGGGAGGATCAGGACCAATTGGGCC 60 consensus_9036#1 ------------------------------------------------------------ consensus_9036#0 AGTAGGTCTGCCGGGAGCAAGTGGAATACCTGGACACGCAGGACCGATGGGACCTATGGG 120 consensus_9036#1 ------------------------------------------------------------ consensus_9036#0 ACCAGTTGGCCCAAGAGGACCGACGGGTGCGATAGGACCTGCTGGAGAACAAGGAATGAA 180 consensus_9036#1 ------------------------------------------------------------ consensus_9036#0 AGGTGCAACTGGACTGCCTGGTGGTCATGGAGACAGTGGAGATGTAGGCGACCCTGGCCC 240 consensus_9036#1 ------------------------------------------------------------ consensus_9036#0 TGATGGCGAAACAGGTCCGGAAGGTCCCGCGGGTGCTGTTGGACCCCCAGGACTTCCAGG 300 consensus_9036#1 ------------------------------------------------------------ consensus_9036#0 TCCTGTTGGTGACCAAGGCCCTGAAGGTCCAGAAGGTGCATCTGGTCCACCTGGTCCCGC 360 consensus_9036#1 ------------------------------------------------------------ consensus_9036#0 AGGATATGACGGTCCACCAGGAATGGACGGGAAAGATGGGTTATCTGGCAAAGATGGGAA 420 consensus_9036#1 ------------------------------------------------------------ consensus_9036#0 ACCCGGGCCACAAGGTGTACCAGGTGAACAAGGAGCAGTCGGAAAAGCAGGTCGTAGAGG 480 consensus_9036#1 ------------------------------------------------------------ consensus_9036#0 AGATCGTGGACCACCTGGACCACAAGGGAAGAGAGGATACAAAGGTCAAGAGGGAGTAAT 540 consensus_9036#1 ------------------------------------------------------------ consensus_9036#0 GGGACCTCCAGGAGTTTATGGTGTTATAGGCTTAATTGGTATTCCTGGATCAAATGGAGA 600 consensus_9036#1 ------------------------------------------------------------ consensus_9036#0 AACTGGAGTAAATGGTACAGTTGGTGATCCTGGTCTTCCTGGTCAACCTGGAACCGACGG 660 consensus_9036#1 AACTGGAGTAAATGGTACAGTTGGTGATAATGGTTTTGATGGTCAAAGTGGAACCGACGG 60 **************************** **** ** ******* ************ consensus_9036#0 ACGTCCGGGCTTACGTGGACAACCTGGGTTACGAGGCCCTCCTGGGCTTCCTGGAGTCGT 720 consensus_9036#1 ACGTCCGGGCTTAAGTGGACAACCTGGGTTAAGAGGCCCTAGTGGGTTTCCTGGAGTTGT 120 ************* ***************** ******** **** ********** ** consensus_9036#0 CAAAGTTCAGCCTTCTACCATAGGTGGAACAGGTTTGCCTGGCGATCGTGGAAATCC-TG 779 consensus_9036#1 CAAAGTTCAGCCTTATACCATAGGTGGAACAGGTTTGCCTGGCGATCGTGGAAATCCATG 180 ************** ****************************************** ** consensus_9036#0 GTTCATATGGACCCACGGGGGAACCCGGCCCTNAAGGAGCGCAGGAGAAAGAGGAATAC 838 consensus_9036#1 GTTCATATGGACCCGCGGGGGAACCCGGCCCTAAAGG-GAGCAGCAG------------ 226 ************** ***************** **** * **** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||