cluster # 9036

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9036 cluster # 9036 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9036#0 length = 838 sequences # 7

consensus_9036#1 length = 226 sequences # 1

consensusID : consensus_9036#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 838
fasta sequence

                              [TGGTGCACATGGGATGAATGGAGTGCCTGGAATTAAGGGAGGATCAGGACCAATTGGGCCAGTAGGTCTGCCGGGAGCAAGTGGAATACCTGGACACGCAGGACCGATGGGACCTATGGGACCAGTTGGCCCAAGAGGACCGACGGGTGCGATAGGACCTGCTGGAGAACAAGGAATGAAAGGTGCAACTGGACTGCCTGGTGGTCATGGAGACAGTGGAGATGTAGGCGACCCTGGCCCTGATGGCGAAACAGGTCCGGAAGGTCCCGCGGGTGCTGTTGGACCCCCAGGACTTCCAGGTCCTGTTGGTGACCAAGGCCCTGAAGGTCCAGAAGGTGCATCTGGTCCACCTGGTCCCGCAGGATATGACGGTCCACCAGGAATGGACGGGAAAGATGGGTTATCTGGCAAAGATGGGAAACCCGGGCCACAAGGTGTACCAGGTGAACAAGGAGCAGTCGGAAAAGCAGGTCGTAGAGGAGATCGTGGACCACCTGGACCACAAGGGAAGAGAGGATACAAAGGTCAAGAGGGAGTAATGGGACCTCCAGGAGTTTATGGTGTTATAGGCTTAATTGGTATTCCTGGATCAAATGGAGAAACTGGAGTAAATGGTACAGTTGGTGATCCTGGTCTTCCTGGTCAACCTGGAACCGACGGACGTCCGGGCTTACGTGGACAACCTGGGTTACGAGGCCCTCCTGGGCTTCCTGGAGTCGTCAAAGTTCAGCCTTCTACCATAGGTGGAACAGGTTTGCCTGGCGATCGTGGAAATCCTGGTTCATATGGACCCACGGGGGAACCCGGCCCTNAAGGAGCGCAGGAGAAAGAGGAATAC]

[-] EMBL CD071983             [TGGTGCACATGGGATGAATGGAGTGCCTGGAATTAAGGGAGGATCAGGACCAATTGGGCCAGTAGGTCTGCCGGGAGCAAGTGGAATACCTGGACACGCAGGACCGATGGGACCTATGGGACCAGTTGGCCCAAGAGGACCGACGGGTGCGATAGGACCTGCTGGAGAACAAGGAATGAAAGGTGCAACTGGACTGCCTGGTGGTCATGGAGACAGTGGAGATGTAGGCGACCCTGGCCCTGATGGCGAAACAGGTCCGGAAGGTCCCGCGGGTGCTGTTGGACCCCCAGGACTTCCAGGTCCTGTTGGTGACCAAGGCCCTGAAGGTCCAGAAGGTGCATCTGGTCCACCTGGTCCCGCAGGATATGACGGTCCACCAGGAATGGACGGGAAAGATGGGTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD071980             [                                                   AATTGGGCCAGTAGGTCTGCCGGGAGCAAGTGGAATACCTGGACACGCAGGACCGATGGGACCTATGGGACCAGTTGGCCCAAGAGGACCGACGGGTGCGATAGGACCTGCTGGAGAACAAGGAATGAAAGGTGCAACTGGACTGCCTGGTGGTCATGGAGACAGTGGAGATGTAGGCGAGCCTGGCCCTGATGGCGAAACAGGTCCGGAAGGTCCCGCGGGTGCTGTTGGACCCCCAGGACTTCCAGGTCCTGTTGGTGACCAAGGCCCTGAAGGTCCAGAAGGTGCATCTGGTCCACCTGGTCCCGCAGGATATGACGGTCCACCAGGAATGGACGGGAATGATGGGTTATCTGGCAAAGATGGGAAACCCGGGCCACAAGGTGTACCA                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD063749             [                                                                                                                  anTGGGA CAGTTGGCCCAAGAGGACCGACGGGTGCGATAGGACCTGCTGGAGAACAAGGAATGAAAGGTGCAACTGGACTGCCTGGTGGTCATGGAGACAGTGGAGATGTAGGCGACCCTGGCCCTGATGGCGAAACAGGTCCGGAAGGTCCCGCGGGTGCTGTTGGACCCCCAGGACTTCCAGGTCCTGTTGGTGACCAAGGCCCTGAAGGTCCAGAAGGTGCATCTGGTCCACCTGGTCCCGCAGGATATGACGGTCCACCAGGAATGGACGGGAAAGATGGGTTATCTGGCAAAGATGGGAAACCCGGGCCACAAGGTGTACCAGGTGAACAAGGAGCAGTCGGAAAAGCAGGTCGTAGAGGAGATCGTGGACCACCTGGACCACAAGGGAAGAGAGGATACAAAGGTCA                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD143011             [                                                                                                                                                                                                                                                                                                                                                                                                     GGAAAGATGGGTTATCTGGCAAAGATGGGAAACCCGGGCCACAAGGTGTACCAGGTGAACAAGGAGCAGTCGGAAAAGCAGGTCGTAGAGGAGATCGTGGACCACCTGGACCACAAGGGAAGAGAGGATACAAAGGTCAAGAGGGAGTAATGGGACCTCCAGGAGTTTATGGTGTTATAGGCTTAATTGGTATTCCTGGATCAAATGGAGAAACTGGAGTAAATGGTACAGTTGGTGATCCTGGTCTTCCTGGTCAACCTGGAACCGACGGACGTCCGGGCTTACGTGGACAACCTGGGTTACGAGGCCCTCCTGGGCTTTCTGa                                                                                                                            ]
[+] EMBL CD180775             [                                                                                                                                                                                                                                                                                                                                                                                                     GGAAAGATGGGTTATCTGGCAAAGATGGGAAACCCGGGCCACAAGGTGTACCAGGTGAACAAGGAGCAGTCGGAAAAGCAGGTCGTAGAGGAGATCGTGGACCACCTGGACCACAAGGGAAGAGAGGATACAAAGGTCAAGAGGGAGTAATGGGACCTCCAGGAGTTTATGGTGTTATAGGCTTAATTGGTATTCCTGGATCAAATGGAGAAACTGGAGTA                                                                                                                                                                                                                                    ]
[+] EMBL CD067619             [                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACCAGGTGAACAAGGAGCAGTCGGAAAAGCAGGTCGTAGAGGAGATCGTAGACCACCTGGACCACAAGGGAAGAGAGGATACAAAGGTCAAGAGGGAGTAATGGGACCTCCAGGAGTTTATGGTGTTATAGGCTTAATTGGTATTCCTGGATCAAATGGAGAAACTGGAGTAAATGGTACAGTTGGTGATCCTGGTCTTCCTGGTCAACCTGGAACCGACGGACGTCCGGGCTTACGTGGACAACCTGGGTTACGAGGCCCTCCTGGGCTTCCTGGAGTCGTCAAAGTTCAGCCTTCTACCATAGGTGGAACAGGTTTGCCTGGCGATCGTGGAAATCCTGGTTCATATGGACCCA                                            ]
[+] EMBL CD143209             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GATACAAAGGTCAAGAGGGAGTAATGGGACCTCCAGGAGTTTATGGTGTTATAGGCTTAATTGGTATTCCTGGATCAAATGGAGAAACTGGAGTAAATGGTACAGTTGGTGATCCTGGTCTTCCTGGTCAACCTGGAACCGACGGACGTCCGGGCTTACGTGGACAACCTGGGTTACGAGGCCCTCCTGGGCTTCCTGGAGTCGTCAAAGTTCAGCCTTCTACCATAGGTGGAACAGGTTTGCCTGGCGATCGTGGAAATCCTGGTTCATATGGACCCACGGGGGAACCCGGCCCTNAAGGAGCGCAGGAGAAAGAGGAATAC]




>consensus_9036#0
TGGTGCACATGGGATGAATGGAGTGCCTGGAATTAAGGGAGGATCAGGACCAATTGGGCC
AGTAGGTCTGCCGGGAGCAAGTGGAATACCTGGACACGCAGGACCGATGGGACCTATGGG
ACCAGTTGGCCCAAGAGGACCGACGGGTGCGATAGGACCTGCTGGAGAACAAGGAATGAA
AGGTGCAACTGGACTGCCTGGTGGTCATGGAGACAGTGGAGATGTAGGCGACCCTGGCCC
TGATGGCGAAACAGGTCCGGAAGGTCCCGCGGGTGCTGTTGGACCCCCAGGACTTCCAGG
TCCTGTTGGTGACCAAGGCCCTGAAGGTCCAGAAGGTGCATCTGGTCCACCTGGTCCCGC
AGGATATGACGGTCCACCAGGAATGGACGGGAAAGATGGGTTATCTGGCAAAGATGGGAA
ACCCGGGCCACAAGGTGTACCAGGTGAACAAGGAGCAGTCGGAAAAGCAGGTCGTAGAGG
AGATCGTGGACCACCTGGACCACAAGGGAAGAGAGGATACAAAGGTCAAGAGGGAGTAAT
GGGACCTCCAGGAGTTTATGGTGTTATAGGCTTAATTGGTATTCCTGGATCAAATGGAGA
AACTGGAGTAAATGGTACAGTTGGTGATCCTGGTCTTCCTGGTCAACCTGGAACCGACGG
ACGTCCGGGCTTACGTGGACAACCTGGGTTACGAGGCCCTCCTGGGCTTCCTGGAGTCGT
CAAAGTTCAGCCTTCTACCATAGGTGGAACAGGTTTGCCTGGCGATCGTGGAAATCCTGG
TTCATATGGACCCACGGGGGAACCCGGCCCTNAAGGAGCGCAGGAGAAAGAGGAATAC

consensusID : consensus_9036#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 226
fasta sequence

                              [AACTGGAGTAAATGGTACAGTTGGTGATAATGGTTTTGATGGTCAAAGTGGAACCGACGGACGTCCGGGCTTAAGTGGACAACCTGGGTTAAGAGGCCCTAGTGGGTTTCCTGGAGTTGTCAAAGTTCAGCCTTATACCATAGGTGGAACAGGTTTGCCTGGCGATCGTGGAAATCCATGGTTCATATGGACCCGCGGGGGAACCCGGCCCTAAAGGGAGCAGCAG]

[-] EMBL CD093139             [AACTGGAGTAAATGGTACAGTTGGTGATAATGGTTTTGATGGTCAAAGTGGAACCGACGGACGTCCGGGCTTAAGTGGACAACCTGGGTTAAGAGGCCCTAGTGGGTTTCCTGGAGTTGTCAAAGTTCAGCCTTATACCATAGGTGGAACAGGTTTGCCTGGCGATCGTGGAAATCCATGGTTCATATGGACCCGCGGGGGAACCCGGCCCTAAAGGGAGCAGCAG]




>consensus_9036#1
AACTGGAGTAAATGGTACAGTTGGTGATAATGGTTTTGATGGTCAAAGTGGAACCGACGG
ACGTCCGGGCTTAAGTGGACAACCTGGGTTAAGAGGCCCTAGTGGGTTTCCTGGAGTTGT
CAAAGTTCAGCCTTATACCATAGGTGGAACAGGTTTGCCTGGCGATCGTGGAAATCCATG
GTTCATATGGACCCGCGGGGGAACCCGGCCCTAAAGGGAGCAGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9036#0      TGGTGCACATGGGATGAATGGAGTGCCTGGAATTAAGGGAGGATCAGGACCAATTGGGCC 60
consensus_9036#1      ------------------------------------------------------------
                                                                                  

consensus_9036#0      AGTAGGTCTGCCGGGAGCAAGTGGAATACCTGGACACGCAGGACCGATGGGACCTATGGG 120
consensus_9036#1      ------------------------------------------------------------
                                                                                  

consensus_9036#0      ACCAGTTGGCCCAAGAGGACCGACGGGTGCGATAGGACCTGCTGGAGAACAAGGAATGAA 180
consensus_9036#1      ------------------------------------------------------------
                                                                                  

consensus_9036#0      AGGTGCAACTGGACTGCCTGGTGGTCATGGAGACAGTGGAGATGTAGGCGACCCTGGCCC 240
consensus_9036#1      ------------------------------------------------------------
                                                                                  

consensus_9036#0      TGATGGCGAAACAGGTCCGGAAGGTCCCGCGGGTGCTGTTGGACCCCCAGGACTTCCAGG 300
consensus_9036#1      ------------------------------------------------------------
                                                                                  

consensus_9036#0      TCCTGTTGGTGACCAAGGCCCTGAAGGTCCAGAAGGTGCATCTGGTCCACCTGGTCCCGC 360
consensus_9036#1      ------------------------------------------------------------
                                                                                  

consensus_9036#0      AGGATATGACGGTCCACCAGGAATGGACGGGAAAGATGGGTTATCTGGCAAAGATGGGAA 420
consensus_9036#1      ------------------------------------------------------------
                                                                                  

consensus_9036#0      ACCCGGGCCACAAGGTGTACCAGGTGAACAAGGAGCAGTCGGAAAAGCAGGTCGTAGAGG 480
consensus_9036#1      ------------------------------------------------------------
                                                                                  

consensus_9036#0      AGATCGTGGACCACCTGGACCACAAGGGAAGAGAGGATACAAAGGTCAAGAGGGAGTAAT 540
consensus_9036#1      ------------------------------------------------------------
                                                                                  

consensus_9036#0      GGGACCTCCAGGAGTTTATGGTGTTATAGGCTTAATTGGTATTCCTGGATCAAATGGAGA 600
consensus_9036#1      ------------------------------------------------------------
                                                                                  

consensus_9036#0      AACTGGAGTAAATGGTACAGTTGGTGATCCTGGTCTTCCTGGTCAACCTGGAACCGACGG 660
consensus_9036#1      AACTGGAGTAAATGGTACAGTTGGTGATAATGGTTTTGATGGTCAAAGTGGAACCGACGG 60
                      ****************************  **** **  *******  ************

consensus_9036#0      ACGTCCGGGCTTACGTGGACAACCTGGGTTACGAGGCCCTCCTGGGCTTCCTGGAGTCGT 720
consensus_9036#1      ACGTCCGGGCTTAAGTGGACAACCTGGGTTAAGAGGCCCTAGTGGGTTTCCTGGAGTTGT 120
                      ************* ***************** ********  **** ********** **

consensus_9036#0      CAAAGTTCAGCCTTCTACCATAGGTGGAACAGGTTTGCCTGGCGATCGTGGAAATCC-TG 779
consensus_9036#1      CAAAGTTCAGCCTTATACCATAGGTGGAACAGGTTTGCCTGGCGATCGTGGAAATCCATG 180
                      ************** ****************************************** **

consensus_9036#0      GTTCATATGGACCCACGGGGGAACCCGGCCCTNAAGGAGCGCAGGAGAAAGAGGAATAC 838
consensus_9036#1      GTTCATATGGACCCGCGGGGGAACCCGGCCCTAAAGG-GAGCAGCAG------------ 226
                      ************** ***************** **** * **** **