These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9038#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [CACTCTATGGGTCAGTTATGTTCTTTGCGACATTTTTCGGTTCACTCATCAAACACATGTGCAGCACTCACCGCTTATCATCTTTTAGAGATTTCATCGTGCCACCTTCGCTTTCGCTCTGTATTCTTCGACCCTTATTGATTTTCACAGCAGTTATCAGTTTTTCCAAACTGACTGCAAGTTGATCAGAAGCTTTGCACAAGGGAACCACGACTTATCTTCACGGTTATACTTCTGTACTTACAGTTAGTCTGTTAAATATAGATATAACTAGAAATCGACGCTTACGAACAGTCGTCAACGACACCTACTGACTTTCTACTCTGTAACGAGGGCAGTACAAACATCGGCATCGATTGATAATACACTTATCGTACTATCACTGTGACATCACTACTCTTGCGGCAAACTTAACTTTTCTCATCTGAGGAACTCATGCACTCGTGTTGTCGATCTCAAGG] [+] EMBL CD060197 [CACTCTATGGGTCAGTTATGTTCTTTGCGACATTTTTCGGTTCACTCATCAAACACATGTGCAGCACTCACCGCTTATCATCTTTTAGAGATTTCATCGTGCCACCTTCGCTTTCGCTCTGTATTCTTCGACCCTTATTGATTTTCACAGCAGTTATCAGTTTTTCCAAACTGACTGCAAGTTGATCAGAAGCTTTGCACAAGGGAACCACGACTTATCTTCACGGTTATACTTCTGTACTTACAGTTAGTCTGTTAAATATAGATATAACTAGAAATCGACGCTTACGAACAGTCGTCAACGACACCTACTGACTTTCTACTCTGTAACGAGGGCAGTACAAACATCGGCATCGATTGATAATACACTTATCGTACTATCACTGTGACATCACTACTCTTGCGGCAAACTTAACTTTTCTCATCTGAGGAACTCATGCACTCGTGTTGTCGATCTCAAGG] consensusID : consensus_9038#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [CGAAAGAAAAACTGACTCTATCTGTCCACTTCTGTCAATTGTTCCATCTACTTTTTCATTTATCTAATAGTCATGGCATAGATCTGAAACAATTTTACCTGTCAAAAAGTATCTATGGAATTAAAAAATCATTGATGAATTACGATCGACTAATAACTAATGAAAAGAGTCAACTTTCAAGAGAACGTTACGACTGAAATGAACAACACGAGCTTTTAATGAAACGGCATCGATTGAAGAGTATTTCAATTGTACTTACTACGAGTACTTTAAATTACAGATTATCGATGAAATAAATACAGAATGTGTGACAGATCACTGGGAAACGTCGAACGACTACCTATGCAA] [+] EMBL CD162129 [CGAAAGAAAAACTGACTCTATCTGTCCACTTCTGTCAATTGTTCCATCTACTTTTTCATTTATCTAATAGTCATGGCATAGATCTGAAACAATTTTACCTGTCAAAAAGTATCTATGGAATTAAAAAATCATTGATGAATTACGATCGACTAATAACTAATGAAAAGAGTCAACTTTCAAGAGAACGTTACGACTGAAATGAACAACACGAGCTTTTAATGAAACGGCATCGATTGAAGAGTATTTCAATTGTACTTACTACGAGTACTTTAAATTACAGATTATCGATGAAATAAATACAGAATGTGTGACAGATCACTGGGAAACGTCGAACGACTACCTATGCAA] consensusID : consensus_9038#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [CTCATAGTCACATGCTAGCATTTCAATTTTTGACTGCATAGTGACAGTACTTATGTACACTTTTAGATACGTATGACACTTTCGTTTAATACACTCACCCCTCGCTTGACTCTGTAATTTATCAGGTATTGTACAATTTTTTCCCTACATGGTAACACTATTTACATACCACTTCAGTGTTATTTTTCGAAAACAGACACTTTTTTTATAAATGTGCTATTTGCTACGAGGGGGCTATGTAGTATCGGTTTATATGTTAAGCCCATATACTTCATTCTA] [+] EMBL CD165745 [CTCATAGTCACATGCTAGCATTTCAATTTTTGACTGCATAGTGACAGTACTTATGTACACTTTTAGATACGTATGACACTTTCGTTTAATACACTCACCCCTCGCTTGACTCTGTAATTTATCAGGTATTGTACAATTTTTTCCCTACATGGTAACACTATTTACATACCACTTCAGTGTTATTTTTCGAAAACAGACACTTTTTTTATAAATGTGCTATTTGCTACGAGGGGGCTATGTAGTATCGGTTTATATGTTAAGCCCATATACTTCATTCTA] consensusID : consensus_9038#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [GTAGTTCCCTCTCCATTGAGTATAGCGTGGAAGGCCTGGAACCTATTGCTGAGGACTATCTTGAATTCGTTGATTCTGTCATTATCTGCGAAGAAAAGTTGTAGTAAACTTTTGTGATGTTGTCCGCCCCGTTGTCCAATGCTTCTTGAGTTTCAGTTTCATCTTGACGACCAGCAAGTGATGATCTGACGTCGTATCAGCTCCTCTCTTGATTCTCACATCCTCCATCGTCCTTCTGAAATTTGTATTGATGCAGATATGGCCGATTT] [+] EMBL CD091682 [GTAGTTCCCTCTCCATTGAGTATAGCGTGGAAGGCCTGGAACCTATTGCTGAGGACTATCTTGAATTCGTTGATTCTGTCATTATCTGCGAAGAAAAGTTGTAGTAAACTTTTGTGATGTTGTCCGCCCCGTTGTCCAATGCTTCTTGAGTTTCAGTTTCATCTTGACGACCAGCAAGTGATGATCTGACGTCGTATCAGCTCCTCTCTTGATTCTCACATCCTCCATCGTCCTTCTGAAATTTGTATTGATGCAGATATGGCCGATTT] consensusID : consensus_9038#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 139 fasta sequence [AAGGTCTGTGTATGCTGCCTCGATGTCCGGTGGATTCAATGGAGCTGGTCTATTCAGCAGTTCCTCGAAGCATTCTATCCTTCTGTTCTTGAATCTTCGTGGTTGTCCTTCCTTCTATGTTCTTGACTGGTCTCTCCGG] [+] EMBL CD192016 [AAGGTCTGTGTATGCTGCCTCGATGTCCGGTGGATTCAATGGAGCTGGTCTATTCAGCAGTTCCTCGAAGCATTCTATCCTTCTGTTCTTGAATCTTCGTGGTTGTCCTTCCTTCTATGTTCTTGACTGGTCTCTCCGG] [+] EMBL CD192113 [ GTCTGTGTATGCTGCCTCGATGTCCGGTGGATTCAATGGAGCTGGTCTATTCAGCAGTTCCTCGAAGCATTCTATCCTTCTGTTCTTGAATCTTCGTGGTTGTCCTTCCTTCTATGTTCTTGACTGGTCTCTCCGG] consensusID : consensus_9038#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 137 fasta sequence [GTGATAGCGGTTATGGCGATAGTGGATATGGTGGAGGCTGTACTGGTGGTGACTGTGGCGGCGGCTATGGTGGTGGCTATGGTGGAGGTTGCAGTGGTGGAGATTGTGGTAATTACGGTGGTGGCTATGGTGGTGAT] [+] EMBL CD067878 [GTGATAGCGGTTATGGCGATAGTGGATATGGTGGAGGCTGTACTGGTGGTGACTGTGGCGGCGGCTATGGTGGTGGCTATGGTGGAGGTTGCAGTGGTGGAGATTGTGGTAATTACGGTGGTGGCTATGGTGGTGAT] consensusID : consensus_9038#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 89 fasta sequence [TATAGAATACTTCGAGGAACTGCTGAATAGACCAGCTCCACTGAATCCATCGGACATCGAAGCAGCACACANCAACCTTCCCATAGCTG] [+] EMBL CD114914 [TATAGAATACTTCGAGGAACTGCTGAATAGACCAGCTCCACTGAATCCATCGGACATCGAAGCAGCACACANCAACCTTCCCATAGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9038#0 CACTCTATGGGTCAGTTATGTTCTTTGCGACATTTTTCGGTTCACTCATCAAACACATGT 60 consensus_9038#6 ------------------------------------------------------------ consensus_9038#4 ------------------------------------------------------------ consensus_9038#3 ------------------------------------------------------------ consensus_9038#1 --------------CGAAAGAAAAACTGACTCTATCTGTCCACTTCTGTCAATTGTTCCA 46 consensus_9038#5 ------------------------------------------------------------ consensus_9038#2 -----------------------------------------------CTCATAGTCACAT 13 consensus_9038#0 GCAGCACTCACCGCTTATCATCTTTTAGAGATTTCATCGTGC----CACCTTCGCTTTCG 116 consensus_9038#6 -------------------------TATAGAATACTTCGAGG----AACTGCTGAATAGA 31 consensus_9038#4 -----------------AAGGTCTGTGTATGCTGCCTCGATG----TCCGGTGGATTCAA 39 consensus_9038#3 GTAGTTCCCTCTCCATTGAGTATAGCGTGGAAGGCCTGGAACCTATTGCTGAGGACTATC 60 consensus_9038#1 TCTACTTTTTCATTTATCTAATAGTCATGGCATAGATCTGAAACAATTTTACCTGTCAAA 106 consensus_9038#5 ------GTGATAGCGGTTATGGCGATAGTGGATATGGTGGAGGCTGTACTGGTGGTGACT 54 consensus_9038#2 GCTAGCATTTCAATTTTTGACTGCATAGTGACAGTACTTATG--TACACTTTTAGATACG 71 consensus_9038#0 CTCTGTATTCTTCGACCCTTATTGATTT----TCACAGCAGTTATCAGTTTTTCCA-AAC 171 consensus_9038#6 CCAGCTCCACTGAATCCATCGGACATCG----AAGCAGCACACANCAACCTTCCCATAGC 87 consensus_9038#4 TGGAGCTGGTCTATTCAGCAGTTCCTCG----AAGCATTCTATCCTTCTGTTCTTGAATC 95 consensus_9038#3 TTGAATTCGTTGATTCTGTCATTATCTGCGAAGAAAAGTTGTAGTAAACTTTTGTGATGT 120 consensus_9038#1 AAGTATCTATGGAATTAAAAAATCATTG----ATGAATTACGATCGACTAATAACTAATG 162 consensus_9038#5 GTGGCGGCGGCTATGGTGGTGGCTATGGTGG-AGGTTGCAGTGGTGGAGATTGTGGTAAT 113 consensus_9038#2 TATGACACTTTCGTTTAATACACTCACCC--CTCGCTTGACTCTGTAATTTATCAGGTAT 129 consensus_9038#0 TGACTGCAAGTTGATCAGAAGCTTTGCACAAGGGAACCACGACTTATCTTCACGGTTATA 231 consensus_9038#6 TG---------------------------------------------------------- 89 consensus_9038#4 TTCGTGGTTGTCCTTCCTTCTATGTTCTTGACTGGTCTCTCCGG---------------- 139 consensus_9038#3 TGTCCGCCCCGTTGTCCAATGCTTCTTGAGTTTCAGTTTCATCTTGACGACCAGCAAGTG 180 consensus_9038#1 AAAAGAGTCAACTTTCAAGAGAACGTTACGACTGAAATGAACAACACGAGCTTTTAATGA 222 consensus_9038#5 TACGGTGGTGGCTATGGTGGTGAT------------------------------------ 137 consensus_9038#2 TGTACAATTTTTTCCCTACATGGTAACACTATTTACATACCACTTCAGTGTTATTTTTCG 189 consensus_9038#0 CTTCTGTACTTACAGTTAGTCTGTTAAATATAGATATAACTAGAAATCGACGCTTACGAA 291 consensus_9038#6 ------------------------------------------------------------ consensus_9038#4 ------------------------------------------------------------ consensus_9038#3 ATGATCTGACGTCGTATCAGCTCCTCTCTTGATTCTCACATCCTCCATCGTCCTTCTGAA 240 consensus_9038#1 AACGGCATCGATTGAAGAGTATTTCAATTGTACTTACTACGAGTACTTTAAATTACAGAT 282 consensus_9038#5 ------------------------------------------------------------ consensus_9038#2 AAAACAGACACTTTTTTTATAAATGTGCTATTTGCTACGAGGGGGCTATGTAGTATCGGT 249 consensus_9038#0 CAGTCGTCAACGACACCTACTGACTTTCTACTCTGTAACGAGGGCAGTACAAACATCGGC 351 consensus_9038#6 ------------------------------------------------------------ consensus_9038#4 ------------------------------------------------------------ consensus_9038#3 ATTTGTATTGATGCAGATATGGCCGATTT------------------------------- 269 consensus_9038#1 TATCGAT--GAAATAAATACAGAATGTGTGACAGATCACTGGGAAACGTCGAACGACTAC 340 consensus_9038#5 ------------------------------------------------------------ consensus_9038#2 TTATATGTTAAGCCCATATACTTCATTCTA------------------------------ 279 consensus_9038#0 ATCGATTGATAATACACTTATCGTACTATCACTGTGACATCACTACTCTTGCGGCAAACT 411 consensus_9038#6 ------------------------------------------------------------ consensus_9038#4 ------------------------------------------------------------ consensus_9038#3 ------------------------------------------------------------ consensus_9038#1 CTATGCAA---------------------------------------------------- 348 consensus_9038#5 ------------------------------------------------------------ consensus_9038#2 ------------------------------------------------------------ consensus_9038#0 TAACTTTTCTCATCTGAGGAACTCATGCACTCGTGTTGTCGATCTCAAGG 461 consensus_9038#6 -------------------------------------------------- consensus_9038#4 -------------------------------------------------- consensus_9038#3 -------------------------------------------------- consensus_9038#1 -------------------------------------------------- consensus_9038#5 -------------------------------------------------- consensus_9038#2 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||