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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9039#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1388 fasta sequence
[ATAGTAGATAATGTGTTTTATGATCCAATAATTAATGCAACATTCTCGTCGAGAAATCAGTCTACAGCAACAGATTCTAGATTCTATGATGTTGGTGCTGAACCGATTTGGGTAACGAATCAGTTTCATGGTCATAAAAGTGGAGTGACTTTCTGGATTGGAAGTGAGGCGATAATCAAAGGTGAGAGACCAACTCATTATCTAACACCTTACAATGAAAGCATTACATTCACTCAGAGAATTGATATTTTGATGGATTGGTTTGAACATGAAAATATTAACCTTGGTCTTATGTATTATCATCAACCTGATAGAGCAGGACATATTCATGGAGCGGCAAGTGATGAGGTTTTCAAAGCTATCGAGGAGATAAATCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCACTTAGTTGCTGCCTCAATCTGATTATAACAAGTGATCATGGAATGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAAAAATCTGGACATTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTTGATTTGGAACCTGCTCCTAATAATGGTAGTGTTTGTCGAGTTCTTCCCTTATTGAGTCAAGGAAGCTTTGCCA--ATCAACAGATTATCTATCATATTCATCATCAAATTTATTATTCTAAGTATTTTCATGGTACACAATGGATTATATTATTACAATAATAATAATAAACTGTTTTAATGAATGAATTGTTGTTGCCATGACAACTGATTGCATGATTGTCATATTTTAGACACACAAAAACAAACAAACAACAAAACAATTCAGTTGTCGGCTAATTACTCAGATTACATCATTTTTTTTCATTTGATAAGTGATTGGTTTGTTATTTTTGGGAACTTTCTTCAGAACGTTTTACTGTATGTATATTGATATTCTGTAAACTGTACACTTAAATATGTAATGATATATTATTAATATACAATATTGTATTTGGTTACTACTTACATGCGTAAGTAAGTAGTAAGTACATTATAAA]
[-] EMBL CD189041 [ATAGTAGATAATGTGTTTTATGATCCAATAATTAATGCAACATTCTCGTCGAGAAATCAGTCTACAGCAACAGATTCTAGATTCTATGATGTTGGTGCTGAACCGATTTGGGTAACGAATCAGTTTCATGGTCATAAAAGTGGAGTGACTTTCTGGATTGGAAGTGAGGCGATAATCAAAGGTGAGAGACCAACTCATTATCTAACACCTTACAATGAAAGCATTACATTCACTCAGAGAATTGATATTTTGATGGATTGGTTTGAACATGAAAATATTAACCTTGGTCTTATGTATTATCATCAACCTGATAGAGCAGGACATATTCATGGAGCGGCAAGTGATGAGGTTTTCAAAGCCATCGAGGAGATAAATCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCACTTAGTTGCTGCCTCAATCTGATTATAACAAGTGATCATGGAATGACG ]
[+] EMBL CD079352 [ CTAACACCTTACAATGAAAGCATTACATTCACTCAGAGAATTGATATTTTGATGGATTGGTTTGAACATGAAAATATTAACCTTGGTCTTATGTATTATCATCAACCTGATAGAGCAGGACATATTCATGGAGCGGCAAGTGATGAGGTTTTCAAAGCTATCGAGGAGATAAATCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCACTTAGTTGCTGCCTCAATCTGATTATAACAAGTGATCATGGAATGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAAAAATCTGGACATTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAANAGTC ]
[-] EMBL CD064293 [ taTGATGAGGTTTTCAAAGCTATCGAGGAGATAAGTCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCACTTAGTTGCTGCCTCAATCTGATTATAACAAGTGATCATGGAATGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAGAAATCTGGACACTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCGACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGAT ]
[+] EMBL CD083760 [ ATGAGGTTTTCAAAGCTATCGAGGAGATAAATCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCACTTAGTTGCTGCCTCAATCTGATTAT ACAAGTGATCATGGAATGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAAAAATCTGGACATTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTG ]
[+] EMBL CD083547 [ acgaggGAAGTCAGCAGAAATCTGGACACTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTTGATTTGGAACCTGCTCCTAATAATGGTAGTGTTTGTCGAGTTCTTCCCTTATTGAGTCAAGGAAGCTTTGCCAATATCAACAGATTATCTATCATATTCATCATCAAATTTATTATTCTAAGTATTTTCATGGTACACAATGGATTATATTATTAC ]
[+] EMBL BG930569 [ GTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTTGATTTGGAACCTGCTCCTAATAATGGTAGTGTTTGTCGAGTTCTTCCCTTATTGA ]
[-] EMBL CD073629 [ CATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTTGATTTGGAACCTGCTCCTAATAATGGTAGTGTTTGTCGAGTTCTTCCCTTATTGAGTCAAGGAAGCTTTGCCA ATCAACAGATTATCTATCATATTCATCATCAAATTTATTATTCTAAGTATTTTCATGGTACACAATGGATTATATTATTGAAATAATAATAATAAACTGTTTTAATGAATGAATTGTTGTTGCCATGACAACTGATTGCATGATTGTCATATTTTAGACACACAAAAACAAACAAACAACAAAACAATTCAGTTGTCGGCTAATTACTCAGATTACATCATTTTTTTTCATTTGATAAGTGATTGGTTTGTTATTTTTGGGAACTTTCTTCAGAACGTTTTACTGTATGTATATTGATATTCTGTAAACTGTACACTTAAATATGTAATGATATATTATTAATATACAATATTGTATTTGGTTACTACTTACATGCGTAAGTAAGTAGTAAGTACATTATAAA]
consensusID : consensus_9039#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence
[TGGCCCTCNAGGCCAGAATCGGCACGAGGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAGAAATCTGGACACTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTT]
[+] EMBL CD084401 [TGGCCCTCNAGGCCAGAATCGGCACGAGGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAGAAATCTGGACACTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9039#0 ATAGTAGATAATGTGTTTTATGATCCAATAATTAATGCAACATTCTCGTCGAGAAATCAG 60
consensus_9039#1 ------------------------------------------------------------
consensus_9039#0 TCTACAGCAACAGATTCTAGATTCTATGATGTTGGTGCTGAACCGATTTGGGTAACGAAT 120
consensus_9039#1 ------------------------------------------------------------
consensus_9039#0 CAGTTTCATGGTCATAAAAGTGGAGTGACTTTCTGGATTGGAAGTGAGGCGATAATCAAA 180
consensus_9039#1 ------------------------------------------------------------
consensus_9039#0 GGTGAGAGACCAACTCATTATCTAACACCTTACAATGAAAGCATTACATTCACTCAGAGA 240
consensus_9039#1 ------------------------------------------------------------
consensus_9039#0 ATTGATATTTTGATGGATTGGTTTGAACATGAAAATATTAACCTTGGTCTTATGTATTAT 300
consensus_9039#1 ------------------------------------------------------------
consensus_9039#0 CATCAACCTGATAGAGCAGGACATATTCATGGAGCGGCAAGTGATGAGGTTTTCAAAGCT 360
consensus_9039#1 ------------------------------------------------------------
consensus_9039#0 ATCGAGGAGATAAATCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCA 420
consensus_9039#1 ------------------------------------------------------------
consensus_9039#0 CTTAGTTGCTGCCTCAATCTGATTATAACAAGTGATCATGGAATGACGAACATCAGTTCA 480
consensus_9039#1 --------------TGGCCC--TCNAGGCCAGAATCGGCACGAGGACGAACATCAGTTCA 44
* * * ** * ****************
consensus_9039#0 GACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAG 540
consensus_9039#1 GACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAG 104
************************************************************
consensus_9039#0 AAGTCAGCAAAAATCTGGACATTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATAC 600
consensus_9039#1 AAGTCAGCAGAAATCTGGACACTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATAC 164
********* *********** **************************************
consensus_9039#0 AACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACA 660
consensus_9039#1 AACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACA 224
************************************************************
consensus_9039#0 CGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGA 720
consensus_9039#1 CGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGA 284
************************************************************
consensus_9039#0 TGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGT 780
consensus_9039#1 TGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGT 344
************************************************************
consensus_9039#0 TATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCT 840
consensus_9039#1 TATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCT 404
************************************************************
consensus_9039#0 AAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATT 900
consensus_9039#1 AAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATT 464
************************************************************
consensus_9039#0 TGTCTCATGCTTGATTTGGAACCTGCTCCTAATAATGGTAGTGTTTGTCGAGTTCTTCCC 960
consensus_9039#1 TGTCTCATGCTT------------------------------------------------ 476
************
consensus_9039#0 TTATTGAGTCAAGGAAGCTTTGCCAATCAACAGATTATCTATCATATTCATCATCAAATT 1020
consensus_9039#1 ------------------------------------------------------------
consensus_9039#0 TATTATTCTAAGTATTTTCATGGTACACAATGGATTATATTATTACAATAATAATAATAA 1080
consensus_9039#1 ------------------------------------------------------------
consensus_9039#0 ACTGTTTTAATGAATGAATTGTTGTTGCCATGACAACTGATTGCATGATTGTCATATTTT 1140
consensus_9039#1 ------------------------------------------------------------
consensus_9039#0 AGACACACAAAAACAAACAAACAACAAAACAATTCAGTTGTCGGCTAATTACTCAGATTA 1200
consensus_9039#1 ------------------------------------------------------------
consensus_9039#0 CATCATTTTTTTTCATTTGATAAGTGATTGGTTTGTTATTTTTGGGAACTTTCTTCAGAA 1260
consensus_9039#1 ------------------------------------------------------------
consensus_9039#0 CGTTTTACTGTATGTATATTGATATTCTGTAAACTGTACACTTAAATATGTAATGATATA 1320
consensus_9039#1 ------------------------------------------------------------
consensus_9039#0 TTATTAATATACAATATTGTATTTGGTTACTACTTACATGCGTAAGTAAGTAGTAAGTAC 1380
consensus_9039#1 ------------------------------------------------------------
consensus_9039#0 ATTATAAA 1388
consensus_9039#1 --------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||