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Schistosoma mansoni
cluster # 9039 cluster # 9039       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9039#0 length = 1388 sequences # 7  
consensus_9039#1 length = 476 sequences # 1  

consensusID : consensus_9039#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1388
fasta sequence
                              [ATAGTAGATAATGTGTTTTATGATCCAATAATTAATGCAACATTCTCGTCGAGAAATCAGTCTACAGCAACAGATTCTAGATTCTATGATGTTGGTGCTGAACCGATTTGGGTAACGAATCAGTTTCATGGTCATAAAAGTGGAGTGACTTTCTGGATTGGAAGTGAGGCGATAATCAAAGGTGAGAGACCAACTCATTATCTAACACCTTACAATGAAAGCATTACATTCACTCAGAGAATTGATATTTTGATGGATTGGTTTGAACATGAAAATATTAACCTTGGTCTTATGTATTATCATCAACCTGATAGAGCAGGACATATTCATGGAGCGGCAAGTGATGAGGTTTTCAAAGCTATCGAGGAGATAAATCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCACTTAGTTGCTGCCTCAATCTGATTATAACAAGTGATCATGGAATGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAAAAATCTGGACATTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTTGATTTGGAACCTGCTCCTAATAATGGTAGTGTTTGTCGAGTTCTTCCCTTATTGAGTCAAGGAAGCTTTGCCA--ATCAACAGATTATCTATCATATTCATCATCAAATTTATTATTCTAAGTATTTTCATGGTACACAATGGATTATATTATTACAATAATAATAATAAACTGTTTTAATGAATGAATTGTTGTTGCCATGACAACTGATTGCATGATTGTCATATTTTAGACACACAAAAACAAACAAACAACAAAACAATTCAGTTGTCGGCTAATTACTCAGATTACATCATTTTTTTTCATTTGATAAGTGATTGGTTTGTTATTTTTGGGAACTTTCTTCAGAACGTTTTACTGTATGTATATTGATATTCTGTAAACTGTACACTTAAATATGTAATGATATATTATTAATATACAATATTGTATTTGGTTACTACTTACATGCGTAAGTAAGTAGTAAGTACATTATAAA]

[-] EMBL CD189041             [ATAGTAGATAATGTGTTTTATGATCCAATAATTAATGCAACATTCTCGTCGAGAAATCAGTCTACAGCAACAGATTCTAGATTCTATGATGTTGGTGCTGAACCGATTTGGGTAACGAATCAGTTTCATGGTCATAAAAGTGGAGTGACTTTCTGGATTGGAAGTGAGGCGATAATCAAAGGTGAGAGACCAACTCATTATCTAACACCTTACAATGAAAGCATTACATTCACTCAGAGAATTGATATTTTGATGGATTGGTTTGAACATGAAAATATTAACCTTGGTCTTATGTATTATCATCAACCTGATAGAGCAGGACATATTCATGGAGCGGCAAGTGATGAGGTTTTCAAAGCCATCGAGGAGATAAATCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCACTTAGTTGCTGCCTCAATCTGATTATAACAAGTGATCATGGAATGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD079352             [                                                                                                                                                                                                         CTAACACCTTACAATGAAAGCATTACATTCACTCAGAGAATTGATATTTTGATGGATTGGTTTGAACATGAAAATATTAACCTTGGTCTTATGTATTATCATCAACCTGATAGAGCAGGACATATTCATGGAGCGGCAAGTGATGAGGTTTTCAAAGCTATCGAGGAGATAAATCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCACTTAGTTGCTGCCTCAATCTGATTATAACAAGTGATCATGGAATGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAAAAATCTGGACATTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAANAGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD064293             [                                                                                                                                                                                                                                                                                                                                                   taTGATGAGGTTTTCAAAGCTATCGAGGAGATAAGTCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCACTTAGTTGCTGCCTCAATCTGATTATAACAAGTGATCATGGAATGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAGAAATCTGGACACTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCGACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD083760             [                                                                                                                                                                                                                                                                                                                                                       ATGAGGTTTTCAAAGCTATCGAGGAGATAAATCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCACTTAGTTGCTGCCTCAATCTGATTAT ACAAGTGATCATGGAATGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAAAAATCTGGACATTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD083547             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     acgaggGAAGTCAGCAGAAATCTGGACACTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTTGATTTGGAACCTGCTCCTAATAATGGTAGTGTTTGTCGAGTTCTTCCCTTATTGAGTCAAGGAAGCTTTGCCAATATCAACAGATTATCTATCATATTCATCATCAAATTTATTATTCTAAGTATTTTCATGGTACACAATGGATTATATTATTAC                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BG930569             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTTGATTTGGAACCTGCTCCTAATAATGGTAGTGTTTGTCGAGTTCTTCCCTTATTGA                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD073629             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTTGATTTGGAACCTGCTCCTAATAATGGTAGTGTTTGTCGAGTTCTTCCCTTATTGAGTCAAGGAAGCTTTGCCA  ATCAACAGATTATCTATCATATTCATCATCAAATTTATTATTCTAAGTATTTTCATGGTACACAATGGATTATATTATTGAAATAATAATAATAAACTGTTTTAATGAATGAATTGTTGTTGCCATGACAACTGATTGCATGATTGTCATATTTTAGACACACAAAAACAAACAAACAACAAAACAATTCAGTTGTCGGCTAATTACTCAGATTACATCATTTTTTTTCATTTGATAAGTGATTGGTTTGTTATTTTTGGGAACTTTCTTCAGAACGTTTTACTGTATGTATATTGATATTCTGTAAACTGTACACTTAAATATGTAATGATATATTATTAATATACAATATTGTATTTGGTTACTACTTACATGCGTAAGTAAGTAGTAAGTACATTATAAA]


>consensus_9039#0 ATAGTAGATAATGTGTTTTATGATCCAATAATTAATGCAACATTCTCGTCGAGAAATCAG TCTACAGCAACAGATTCTAGATTCTATGATGTTGGTGCTGAACCGATTTGGGTAACGAAT CAGTTTCATGGTCATAAAAGTGGAGTGACTTTCTGGATTGGAAGTGAGGCGATAATCAAA GGTGAGAGACCAACTCATTATCTAACACCTTACAATGAAAGCATTACATTCACTCAGAGA ATTGATATTTTGATGGATTGGTTTGAACATGAAAATATTAACCTTGGTCTTATGTATTAT CATCAACCTGATAGAGCAGGACATATTCATGGAGCGGCAAGTGATGAGGTTTTCAAAGCT ATCGAGGAGATAAATCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCA CTTAGTTGCTGCCTCAATCTGATTATAACAAGTGATCATGGAATGACGAACATCAGTTCA GACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAG AAGTCAGCAAAAATCTGGACATTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATAC AACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACA CGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGA TGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGT TATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCT AAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATT TGTCTCATGCTTGATTTGGAACCTGCTCCTAATAATGGTAGTGTTTGTCGAGTTCTTCCC TTATTGAGTCAAGGAAGCTTTGCCAATCAACAGATTATCTATCATATTCATCATCAAATT TATTATTCTAAGTATTTTCATGGTACACAATGGATTATATTATTACAATAATAATAATAA ACTGTTTTAATGAATGAATTGTTGTTGCCATGACAACTGATTGCATGATTGTCATATTTT AGACACACAAAAACAAACAAACAACAAAACAATTCAGTTGTCGGCTAATTACTCAGATTA CATCATTTTTTTTCATTTGATAAGTGATTGGTTTGTTATTTTTGGGAACTTTCTTCAGAA CGTTTTACTGTATGTATATTGATATTCTGTAAACTGTACACTTAAATATGTAATGATATA TTATTAATATACAATATTGTATTTGGTTACTACTTACATGCGTAAGTAAGTAGTAAGTAC ATTATAAA



consensusID : consensus_9039#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 476
fasta sequence
                              [TGGCCCTCNAGGCCAGAATCGGCACGAGGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAGAAATCTGGACACTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTT]

[+] EMBL CD084401             [TGGCCCTCNAGGCCAGAATCGGCACGAGGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAGAAATCTGGACACTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTT]


>consensus_9039#1 TGGCCCTCNAGGCCAGAATCGGCACGAGGACGAACATCAGTTCAGACAGAGTTATATATC TTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAGAAATCT GGACACTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATC GACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTT CAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTG ACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACA AAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAG AATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9039#0      ATAGTAGATAATGTGTTTTATGATCCAATAATTAATGCAACATTCTCGTCGAGAAATCAG 60
consensus_9039#1      ------------------------------------------------------------
                                                                                  

consensus_9039#0      TCTACAGCAACAGATTCTAGATTCTATGATGTTGGTGCTGAACCGATTTGGGTAACGAAT 120
consensus_9039#1      ------------------------------------------------------------
                                                                                  

consensus_9039#0      CAGTTTCATGGTCATAAAAGTGGAGTGACTTTCTGGATTGGAAGTGAGGCGATAATCAAA 180
consensus_9039#1      ------------------------------------------------------------
                                                                                  

consensus_9039#0      GGTGAGAGACCAACTCATTATCTAACACCTTACAATGAAAGCATTACATTCACTCAGAGA 240
consensus_9039#1      ------------------------------------------------------------
                                                                                  

consensus_9039#0      ATTGATATTTTGATGGATTGGTTTGAACATGAAAATATTAACCTTGGTCTTATGTATTAT 300
consensus_9039#1      ------------------------------------------------------------
                                                                                  

consensus_9039#0      CATCAACCTGATAGAGCAGGACATATTCATGGAGCGGCAAGTGATGAGGTTTTCAAAGCT 360
consensus_9039#1      ------------------------------------------------------------
                                                                                  

consensus_9039#0      ATCGAGGAGATAAATCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCA 420
consensus_9039#1      ------------------------------------------------------------
                                                                                  

consensus_9039#0      CTTAGTTGCTGCCTCAATCTGATTATAACAAGTGATCATGGAATGACGAACATCAGTTCA 480
consensus_9039#1      --------------TGGCCC--TCNAGGCCAGAATCGGCACGAGGACGAACATCAGTTCA 44
                                        *   *     * **          * ****************

consensus_9039#0      GACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAG 540
consensus_9039#1      GACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAG 104
                      ************************************************************

consensus_9039#0      AAGTCAGCAAAAATCTGGACATTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATAC 600
consensus_9039#1      AAGTCAGCAGAAATCTGGACACTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATAC 164
                      ********* *********** **************************************

consensus_9039#0      AACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACA 660
consensus_9039#1      AACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACA 224
                      ************************************************************

consensus_9039#0      CGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGA 720
consensus_9039#1      CGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGA 284
                      ************************************************************

consensus_9039#0      TGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGT 780
consensus_9039#1      TGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGT 344
                      ************************************************************

consensus_9039#0      TATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCT 840
consensus_9039#1      TATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCT 404
                      ************************************************************

consensus_9039#0      AAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATT 900
consensus_9039#1      AAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATT 464
                      ************************************************************

consensus_9039#0      TGTCTCATGCTTGATTTGGAACCTGCTCCTAATAATGGTAGTGTTTGTCGAGTTCTTCCC 960
consensus_9039#1      TGTCTCATGCTT------------------------------------------------ 476
                      ************                                                

consensus_9039#0      TTATTGAGTCAAGGAAGCTTTGCCAATCAACAGATTATCTATCATATTCATCATCAAATT 1020
consensus_9039#1      ------------------------------------------------------------
                                                                                  

consensus_9039#0      TATTATTCTAAGTATTTTCATGGTACACAATGGATTATATTATTACAATAATAATAATAA 1080
consensus_9039#1      ------------------------------------------------------------
                                                                                  

consensus_9039#0      ACTGTTTTAATGAATGAATTGTTGTTGCCATGACAACTGATTGCATGATTGTCATATTTT 1140
consensus_9039#1      ------------------------------------------------------------
                                                                                  

consensus_9039#0      AGACACACAAAAACAAACAAACAACAAAACAATTCAGTTGTCGGCTAATTACTCAGATTA 1200
consensus_9039#1      ------------------------------------------------------------
                                                                                  

consensus_9039#0      CATCATTTTTTTTCATTTGATAAGTGATTGGTTTGTTATTTTTGGGAACTTTCTTCAGAA 1260
consensus_9039#1      ------------------------------------------------------------
                                                                                  

consensus_9039#0      CGTTTTACTGTATGTATATTGATATTCTGTAAACTGTACACTTAAATATGTAATGATATA 1320
consensus_9039#1      ------------------------------------------------------------
                                                                                  

consensus_9039#0      TTATTAATATACAATATTGTATTTGGTTACTACTTACATGCGTAAGTAAGTAGTAAGTAC 1380
consensus_9039#1      ------------------------------------------------------------
                                                                                  

consensus_9039#0      ATTATAAA 1388
consensus_9039#1      --------
                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)