These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9039#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1388 fasta sequence [ATAGTAGATAATGTGTTTTATGATCCAATAATTAATGCAACATTCTCGTCGAGAAATCAGTCTACAGCAACAGATTCTAGATTCTATGATGTTGGTGCTGAACCGATTTGGGTAACGAATCAGTTTCATGGTCATAAAAGTGGAGTGACTTTCTGGATTGGAAGTGAGGCGATAATCAAAGGTGAGAGACCAACTCATTATCTAACACCTTACAATGAAAGCATTACATTCACTCAGAGAATTGATATTTTGATGGATTGGTTTGAACATGAAAATATTAACCTTGGTCTTATGTATTATCATCAACCTGATAGAGCAGGACATATTCATGGAGCGGCAAGTGATGAGGTTTTCAAAGCTATCGAGGAGATAAATCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCACTTAGTTGCTGCCTCAATCTGATTATAACAAGTGATCATGGAATGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAAAAATCTGGACATTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTTGATTTGGAACCTGCTCCTAATAATGGTAGTGTTTGTCGAGTTCTTCCCTTATTGAGTCAAGGAAGCTTTGCCA--ATCAACAGATTATCTATCATATTCATCATCAAATTTATTATTCTAAGTATTTTCATGGTACACAATGGATTATATTATTACAATAATAATAATAAACTGTTTTAATGAATGAATTGTTGTTGCCATGACAACTGATTGCATGATTGTCATATTTTAGACACACAAAAACAAACAAACAACAAAACAATTCAGTTGTCGGCTAATTACTCAGATTACATCATTTTTTTTCATTTGATAAGTGATTGGTTTGTTATTTTTGGGAACTTTCTTCAGAACGTTTTACTGTATGTATATTGATATTCTGTAAACTGTACACTTAAATATGTAATGATATATTATTAATATACAATATTGTATTTGGTTACTACTTACATGCGTAAGTAAGTAGTAAGTACATTATAAA] [-] EMBL CD189041 [ATAGTAGATAATGTGTTTTATGATCCAATAATTAATGCAACATTCTCGTCGAGAAATCAGTCTACAGCAACAGATTCTAGATTCTATGATGTTGGTGCTGAACCGATTTGGGTAACGAATCAGTTTCATGGTCATAAAAGTGGAGTGACTTTCTGGATTGGAAGTGAGGCGATAATCAAAGGTGAGAGACCAACTCATTATCTAACACCTTACAATGAAAGCATTACATTCACTCAGAGAATTGATATTTTGATGGATTGGTTTGAACATGAAAATATTAACCTTGGTCTTATGTATTATCATCAACCTGATAGAGCAGGACATATTCATGGAGCGGCAAGTGATGAGGTTTTCAAAGCCATCGAGGAGATAAATCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCACTTAGTTGCTGCCTCAATCTGATTATAACAAGTGATCATGGAATGACG ] [+] EMBL CD079352 [ CTAACACCTTACAATGAAAGCATTACATTCACTCAGAGAATTGATATTTTGATGGATTGGTTTGAACATGAAAATATTAACCTTGGTCTTATGTATTATCATCAACCTGATAGAGCAGGACATATTCATGGAGCGGCAAGTGATGAGGTTTTCAAAGCTATCGAGGAGATAAATCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCACTTAGTTGCTGCCTCAATCTGATTATAACAAGTGATCATGGAATGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAAAAATCTGGACATTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAANAGTC ] [-] EMBL CD064293 [ taTGATGAGGTTTTCAAAGCTATCGAGGAGATAAGTCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCACTTAGTTGCTGCCTCAATCTGATTATAACAAGTGATCATGGAATGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAGAAATCTGGACACTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCGACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGAT ] [+] EMBL CD083760 [ ATGAGGTTTTCAAAGCTATCGAGGAGATAAATCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCACTTAGTTGCTGCCTCAATCTGATTAT ACAAGTGATCATGGAATGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAAAAATCTGGACATTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTG ] [+] EMBL CD083547 [ acgaggGAAGTCAGCAGAAATCTGGACACTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTTGATTTGGAACCTGCTCCTAATAATGGTAGTGTTTGTCGAGTTCTTCCCTTATTGAGTCAAGGAAGCTTTGCCAATATCAACAGATTATCTATCATATTCATCATCAAATTTATTATTCTAAGTATTTTCATGGTACACAATGGATTATATTATTAC ] [+] EMBL BG930569 [ GTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTTGATTTGGAACCTGCTCCTAATAATGGTAGTGTTTGTCGAGTTCTTCCCTTATTGA ] [-] EMBL CD073629 [ CATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTTGATTTGGAACCTGCTCCTAATAATGGTAGTGTTTGTCGAGTTCTTCCCTTATTGAGTCAAGGAAGCTTTGCCA ATCAACAGATTATCTATCATATTCATCATCAAATTTATTATTCTAAGTATTTTCATGGTACACAATGGATTATATTATTGAAATAATAATAATAAACTGTTTTAATGAATGAATTGTTGTTGCCATGACAACTGATTGCATGATTGTCATATTTTAGACACACAAAAACAAACAAACAACAAAACAATTCAGTTGTCGGCTAATTACTCAGATTACATCATTTTTTTTCATTTGATAAGTGATTGGTTTGTTATTTTTGGGAACTTTCTTCAGAACGTTTTACTGTATGTATATTGATATTCTGTAAACTGTACACTTAAATATGTAATGATATATTATTAATATACAATATTGTATTTGGTTACTACTTACATGCGTAAGTAAGTAGTAAGTACATTATAAA] consensusID : consensus_9039#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [TGGCCCTCNAGGCCAGAATCGGCACGAGGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAGAAATCTGGACACTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTT] [+] EMBL CD084401 [TGGCCCTCNAGGCCAGAATCGGCACGAGGACGAACATCAGTTCAGACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAGAAGTCAGCAGAAATCTGGACACTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATACAACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACACGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGATGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGTTATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCTAAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATTTGTCTCATGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9039#0 ATAGTAGATAATGTGTTTTATGATCCAATAATTAATGCAACATTCTCGTCGAGAAATCAG 60 consensus_9039#1 ------------------------------------------------------------ consensus_9039#0 TCTACAGCAACAGATTCTAGATTCTATGATGTTGGTGCTGAACCGATTTGGGTAACGAAT 120 consensus_9039#1 ------------------------------------------------------------ consensus_9039#0 CAGTTTCATGGTCATAAAAGTGGAGTGACTTTCTGGATTGGAAGTGAGGCGATAATCAAA 180 consensus_9039#1 ------------------------------------------------------------ consensus_9039#0 GGTGAGAGACCAACTCATTATCTAACACCTTACAATGAAAGCATTACATTCACTCAGAGA 240 consensus_9039#1 ------------------------------------------------------------ consensus_9039#0 ATTGATATTTTGATGGATTGGTTTGAACATGAAAATATTAACCTTGGTCTTATGTATTAT 300 consensus_9039#1 ------------------------------------------------------------ consensus_9039#0 CATCAACCTGATAGAGCAGGACATATTCATGGAGCGGCAAGTGATGAGGTTTTCAAAGCT 360 consensus_9039#1 ------------------------------------------------------------ consensus_9039#0 ATCGAGGAGATAAATCATGGACTAGAATACCTCTTGACATCGATTGAAATGCGACCATCA 420 consensus_9039#1 ------------------------------------------------------------ consensus_9039#0 CTTAGTTGCTGCCTCAATCTGATTATAACAAGTGATCATGGAATGACGAACATCAGTTCA 480 consensus_9039#1 --------------TGGCCC--TCNAGGCCAGAATCGGCACGAGGACGAACATCAGTTCA 44 * * * ** * **************** consensus_9039#0 GACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAG 540 consensus_9039#1 GACAGAGTTATATATCTTCATGATTACATACATCCAAATGAGTATATATCTGCTCCTAAG 104 ************************************************************ consensus_9039#0 AAGTCAGCAAAAATCTGGACATTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATAC 600 consensus_9039#1 AAGTCAGCAGAAATCTGGACACTTTGGCCAAAGCAAGGCTATACTGTGCGATCATTATAC 164 ********* *********** ************************************** consensus_9039#0 AACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACA 660 consensus_9039#1 AACAAATTGAAAGATCGACACTTCAGGTTAAATGTCTATTTGAAGGAGGAACTGCCAACA 224 ************************************************************ consensus_9039#0 CGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGA 720 consensus_9039#1 CGTTTCTTTTATGGTTCAAGTGATCGAGTCGGTCCTGTTGTTGTATATGCAGATATTGGA 284 ************************************************************ consensus_9039#0 TGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGT 780 consensus_9039#1 TGGACGATTATTGCTGACAGAACGTCTGGGATAACCCTGAAAAATAAAGGTGCTCATGGT 344 ************************************************************ consensus_9039#0 TATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCT 840 consensus_9039#1 TATGATCCAGATTACAAAGAGATGTCTCCATTTTTAATGGCGATGGGACCTCAGATAGCT 404 ************************************************************ consensus_9039#0 AAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATT 900 consensus_9039#1 AAAAGTCAACCAACAGAATTAAAAGAATCAATCAAGCTGATTGATATTTACTCACTGATT 464 ************************************************************ consensus_9039#0 TGTCTCATGCTTGATTTGGAACCTGCTCCTAATAATGGTAGTGTTTGTCGAGTTCTTCCC 960 consensus_9039#1 TGTCTCATGCTT------------------------------------------------ 476 ************ consensus_9039#0 TTATTGAGTCAAGGAAGCTTTGCCAATCAACAGATTATCTATCATATTCATCATCAAATT 1020 consensus_9039#1 ------------------------------------------------------------ consensus_9039#0 TATTATTCTAAGTATTTTCATGGTACACAATGGATTATATTATTACAATAATAATAATAA 1080 consensus_9039#1 ------------------------------------------------------------ consensus_9039#0 ACTGTTTTAATGAATGAATTGTTGTTGCCATGACAACTGATTGCATGATTGTCATATTTT 1140 consensus_9039#1 ------------------------------------------------------------ consensus_9039#0 AGACACACAAAAACAAACAAACAACAAAACAATTCAGTTGTCGGCTAATTACTCAGATTA 1200 consensus_9039#1 ------------------------------------------------------------ consensus_9039#0 CATCATTTTTTTTCATTTGATAAGTGATTGGTTTGTTATTTTTGGGAACTTTCTTCAGAA 1260 consensus_9039#1 ------------------------------------------------------------ consensus_9039#0 CGTTTTACTGTATGTATATTGATATTCTGTAAACTGTACACTTAAATATGTAATGATATA 1320 consensus_9039#1 ------------------------------------------------------------ consensus_9039#0 TTATTAATATACAATATTGTATTTGGTTACTACTTACATGCGTAAGTAAGTAGTAAGTAC 1380 consensus_9039#1 ------------------------------------------------------------ consensus_9039#0 ATTATAAA 1388 consensus_9039#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||