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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9040#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 976 fasta sequence
[CCAATCGAATCTCCCTGATCATCCCAACTTGCTTCCCTGTATCGCGAGTGGCCTACAACATGTCTCTAGACGTGAACAAGGAGCTATTTCAGAAGTTCTTTTGGTGTTATCTTATAGCAAGCGAGGTACATTGCAACGTGAAATTGACCATAGATCTGCACGTAATGATATGTTCCCCTTGTACCTCATAAAGACCATGATGATTGGTATTTGCGATGGCCTTATTGCTCTTCTTTCTCTTGATATTCCAATGTCTCATCGAGATATAAAGCCTGGGAATGTTCTTTTGTTTGAAGAAATGAGACCAGTTTTAATGGATTTTGG--CTGTTACTCCATCCATTCTTCCTATTGAGAACATTAGAGACGCAGAAAAATGGAAGGAGTTTGCTGAGGAAAACTGTTCACTAACTTATCGGGCTCCAGAGTTGTTTAATCCAATAACTCACGAAAACATAACCGAGAAAGCTGATGTTTGGTCCCTAGGATGTTTGTTGTATGCTTTGATTTTCTTCAAATCCCCAATGGATTTC-GTTCATGCTCGGGGTGACAGCGTTGCTCTTGC-TGCTTGTTCAGCTAATATACATTTCCCAATAGACTCGTGTTCAAATGTTCCACCAGAA-TGGATAAAGTTAAT-GGAAGCAATGCTGTCCGCTAATCCTCAAGATCGTCCTTCACTTACTCAAATTGTGGAGTCCTTCAAAAACGTACCTGAAGAAATCATGTATTGTAATAATCAAAGTGCAATAACTTATT-CGTTGTAATTTCGACTCAGCTTGACTAAATCCCACATGAAATCTATCCGTAAAACATTTACTCTTTTACTCTTCTTTTATACTATTTACAAAATACTGAGAAGTCTTTCTAAACTTTTTACCTTCACTTTTATTCTCTGTACTTTTTAATATTCCACATAATATTGCATAGAATTGCAGGACGGTTTTGGTTTTTCGTTCGAAAATGAAATATAACTAAATAT]
[+] EMBL CD078815 [CCAATCGAATCTCCCTGATCATCCCAACTTGCTTCCCTGTATCGCGAGTGGCCTACAACATGTCTCTAGACGTGAACAAGGAGCTATTTCAGAAGTTCTTTTGGTGTTATCTTATAGCAAGCGAGGTACATTGCAACGTGAAATTGACCATAGATCTGCACGTAATGATATGTTCCCCTTGTACCTCATAAAGACCATGATGATTGGTATTTGCGATGGCCTTATTGCTCTTCTTTCTCTTGATATTCCAATGTCTCATCGAGATATAAAGCCTGGGAATGTTCTTTTGTTTGAAGAAATGAGACCAGTTTTAATGGATTTTGG CTGTTACTCCATCCATTCTTCCTATTGAGAACATTAGAGACGCAGAAAAATGGAAGGAGTTTGCTGAGGAAAACTGTTCACTAACTTATCGGGCTCCAGAGTTGTTTAATCCAATAACTCACGAAAACATAACCGAGAAAGCTGATGTTTGGTCCCTAGGATGTTTGTTGTATGCTTTGATTTTCTTCANATCCCCAATGGATTTC GTTCATGCTCGGNGTGACAGCGTTGCTCTTGC TGCTTGTTCAGCTAATATACATTTCCCAATAGACTCGTGTTCANATG ]
[+] EMBL SMAA25637 [ aggaagAATGGATTTTGGCTCTGTTACTCCATCCATTCTTCCTATTGAGAACATTAGAGACGCAGAAAAATGGAAGGAGTTTGCTGAGGAAAACTGTTCACTAACTTATCGGGCTCCAGAGTTGTTTAATCCAATAACTCACGAAAACATAACCGAGAAAGCTGATGTTTGGTCCCTAGGATGTTTGTTGTATGCTTTGATTTTCTTCAAAT CCCGATGGATTTCGGTTCATGCTCGGGGTGACAGCGTTGCTCTTGCTTGCTTGTTCAGCTAATATACATTTCCCAATAGACTCGTGTTCAAATGTTCCACCAGAAGTGGATAAAGTTAATCGGAAGCAATGCTGTCCGCTAATCCTCAAGATCGTCCTTCACTTACTCAAATTGTGGAGT CTTC AAAACGT GCTAGAGAAATCATGGAATGGTATAATCAAAGTGCAATAAC TATTCCGTTGTAA TTCGAATCAGCTg ]
[-] EMBL CD073276 [ GAAGGAGTTTGCTGAGGAAAACTGTTCACTAACTTATCGGGCTCCAGAGTTGTTTAATCCAATAACTCACGAAAACATAACCGAGAAAGCTGATGTTTGGTCCCTAGGATGTTTGTTGTATGCTTTGATTTTCTTCAAATCCCCAATGGATTTC GTTCATGCTCGGGGTGACAGCGTTGCTCTTGC TGCTTGTTCAGCTAATATACATTTCCCAATAGACTCGTGTTCAAATGTTCCACCAGAA TTGATAAAGTTAAT GGAAGCAATGCTGTCCGCTAATCCTCAAGATCGTCCTTCACTTACTCAAATTGTGGAGTCCTTCAAAAACGTACCTGAAGAAATCATGTATTGTAATAATCAAAGTGCAATAACTTATT CGTTGTAATTTCGACTCAGCTTGACTAAATCCCACATGAAATCTATCCGTAAAACATTTACTCTTTTACTCTTCTTTTATACTATTTACAAAATACTGAGAAGTCTTTCTAAACTTTTTACCTTCACTTTTATTCTCTGTACTTTTTAATATTCCACATAATATTGCATAGAATTGCAGGACGGTTTTGGTTTTTCGTTCGAAAATGAAATATAACTAA ]
[-] EMBL AA999345 [ AGTCCTTCAAAAACGTTCCTGAAGAAATCATGTATTGTAATAATCAAAGTGCAATAACTTATT CGTTGTAATTTCGACTCAGCTTGACTTAATCCCATTTGAAATCTATCCGTAAAACATTTACTCTTTTACTCTTCTTTTATACTATTTACAAAATACTGAGAAGTCTTTCTAAACTTTTTACCTTCACTTTTATTCTCTGTACTTTTTAATATTCCACATAATATTGCATAGAATTGCAGGACGGTTTTGGTTTTTCGTTCGAAAATGAAATATAACTAAATAT]
consensusID : consensus_9040#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence
[AAATTGAATGTATGGTTCTGAGAAGATTTTGTCTTGTGGNTTGTACAGACCCATGTAGTGAAGCTGTTCGAGTAAAGGATGCATCAGGACATTGGAAAACGTTTTACGTGCGCTATAAGTTAGATACCGGGTATGTTTATAAGGTTTTCTAATAATGGAAGTTTTTAGGGGATTTAGCCGAATAGATCTTATTTTTGACAAAGGGTCTAAAAGATCATTCGCTTTAATACGTATCCTATGTCATTCAAAGGATGATGAAAGTAAGGCTTTAAAGGAAGCTAATTTCCAATCGAATCTCCCTGATCATCCCGACTTGCTTCCCTGTATCGCGAGTGGCCTACAACATGTCTCTAGACGTGAACAAGGAGCTATTTCAGAAGTTCTTTTGGTGTTATCTTATAGCAAGGTATGTCTTAATATATGTCAGATGAAATATTACAGCGAGGTACACTGCACGTGAAATTGACCATAGATCTGCACGTAATGATATGTTCCCCTTGTACCTCAT]
[-] EMBL CD064448 [AAATTGAATGTATGGTTCTGAGAAGATTTTGTCTTGTGGNTTGTACAGACCCATGTAGTGAAGCTGTTCGAGTAAAGGATGCATCAGGACATTGGAAAACGTTTTACGTGCGCTATAAGTTAGATACCGGGTATGTTTATAAGGTTTTCTAATAATGGAAGTTTTTAGGGGATTTAGCCGAATAGATCTTATTTTTGACAAAGGGTCTAAAAGATCATTCGCTTTAATACGTATCCTATGTCATTCAAAGGATGATGAAAGTAAGGCTTTAAAGGAAGCTAATTTCCAATCGAATCTCCCTGATCATCCCGACTTGCTTCCCTGTATCGCGAGTGGCCTACAACATGTCTCTAGACGTGAACAAGGAGCTATTTCAGAAGTTCTTTTGGTGTTATCTTATAGCAAGGTATGTCTTAATATATGTCAGATGAAATATTACAGCGAGGTACACTGCACGTGAAATTGACCATAGATCTGCACGTAATGATATGTTCCCCTTGTACCTCAT]
consensusID : consensus_9040#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence
[GTGTAGCATTCCATAAAACANNTTTTTCCTCTCCTTCATTTAATTTTTCAGTGTTCCACCAGAATTGATAAAGTTAATGGAAGCAATGCTGTCCGCTAATCCTCAAGATCGTCCTTCACTTACTCAAATTGTGGAGTCCTTCAAAAACGTACCTGAAGAAATCATGTATTGTAATAATCAAAGTGCAATAACTTATTCGTNGTAATTTCGACTCAGCTTGACTAAATCCCACATGAAATCTATCCGTAAAACATTTACTCTTTTACTCTTCTCTTATACTATTTACAAAATACTGAGAAGTCTTTCTAAACNNTTTACCTTCACTNTTATTCTCTGTACNTNATAATATTCCACATAATATTGCATAGAATTGCAGGACGGTTTTGGTTTNTCGTTCGAAAATGAAATATAACTAAATA]
[-] EMBL SMAA18466 [GTGTAGCATTCCATAAAACANNTTTTTCCTCTCCTTCATTTAATTTTTCAGTGTTCCACCAGAATTGATAAAGTTAATGGAAGCAATGCTGTCCGCTAATCCTCAAGATCGTCCTTCACTTACTCAAATTGTGGAGTCCTTCAAAAACGTACCTGAAGAAATCATGTATTGTAATAATCAAAGTGCAATAACTTATTCGTNGTAATTTCGACTCAGCTTGACTAAATCCCACATGAAATCTATCCGTAAAACATTTACTCTTTTACTCTTCTCTTATACTATTTACAAAATACTGAGAAGTCTTTCTAAACNNTTTACCTTCACTNTTATTCTCTGTACNTNATAATATTCCACATAATATTGCATAGAATTGCAGGACGGTTTTGGTTTNTCGTTCGAAAATGAAATATAACTAAATA]
consensusID : consensus_9040#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence
[GAAGCAAGTTGGGATGATCAGGGAGATTCGATTGGAAATTAGCTTCCTTTAAAGCCTTACTTTCATCATCCTTTGAATGACATAGGATACGTTTTAAAGCGAATGATCTTTTATACCCTTTGTCAAAAATAAGATCTATTCGGCTAAATCCACTAAAAACCGGTATCTAACTTATAGCGCACGTAAAACGTTTTCCAATGTCCTGATGCATCCTTTACTCGAACAGCTTCACTACATGGGTCTGTACAACCCACAAGACAAAATCTTCTCAGAACCATACATTCAATTTGAATTCGTCAACGTTAAAGATTC]
[+] EMBL CD157897 [GAAGCAAGTTGGGATGATCAGGGAGATTCGATTGGAAATTAGCTTCCTTTAAAGCCTTACTTTCATCATCCTTTGAATGACATAGGATACGTTTTAAAGCGAATGATCTTTTATACCCTTTGTCAAAAATAAGATCTATTCGGCTAAATCCACTAAAAACCGGTATCTAACTTATAGCGCACGTAAAACGTTTTCCAATGTCCTGATGCATCCTTTACTCGAACAGCTTCACTACATGGGTCTGTACAACCCACAAGACAAAATCTTCTCAGAACCATACATTCAATTTGAATTCGTCAACGTTAAAGATTC]
consensusID : consensus_9040#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 141 fasta sequence
[AGAGTATTTACAAAACAATGACAAGTCTTTATAAACTTTTTACCTTCACTTTTATTCTCTGTACTTTTTAATATCCCACATAATATTGCATAGAATTGCAGGACGGTATTGGCTCTTCGTTCGAAAATGGAATATACCTTG]
[-] EMBL CD073275 [AGAGTATTTACAAAACAATGACAAGTCTTTATAAACTTTTTACCTTCACTTTTATTCTCTGTACTTTTTAATATCCCACATAATATTGCATAGAATTGCAGGACGGTATTGGCTCTTCGTTCGAAAATGGAATATACCTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9040#2 ------------------------------------------------------------
consensus_9040#4 ------------------------------------------------------------
consensus_9040#0 CCAATCGAATCTCCCTGATCATCCCAACTTGCTTCCCTGTATCGCGAGTGGCCTACAACA 60
consensus_9040#1 ------------------------------------------------------------
consensus_9040#3 ------------------------------------------------------------
consensus_9040#2 ------------------------------------------------------------
consensus_9040#4 ------------------------------------------------------------
consensus_9040#0 TGTCTCTAGACGTGAACAAGGAGCTATTTCAGAAGTTCTTTTGGTGTTATCTTATAGCAA 120
consensus_9040#1 ------------------------------------------------------------
consensus_9040#3 ------------------------------------------------------------
consensus_9040#2 ------------------------------------------------------------
consensus_9040#4 ------------------------------------------------------------
consensus_9040#0 GCGAGGTACATTGCAACGTGAAATTGACCATAGATCTGCACGTAATGATATGTTCCCCTT 180
consensus_9040#1 ------------------------------------------------------------
consensus_9040#3 ------------------------------------------------------------
consensus_9040#2 ------------------------------------------------------------
consensus_9040#4 ------------------------------------------------------------
consensus_9040#0 GTACCTCATAAAGACCATGATGATTGGTATTTGCGATGGCCTTATTGCTCTTCTTTCTCT 240
consensus_9040#1 ------------------------------------------------------------
consensus_9040#3 ------------------------------------------------------------
consensus_9040#2 ------------------------------------------------------------
consensus_9040#4 ------------------------------------------------------------
consensus_9040#0 TGATATTCCAATGTCTCATCGAGATATAAAGCCTGGGAATGTTCTTTTGTTTGAAGAAAT 300
consensus_9040#1 ------------------------------------------------------------
consensus_9040#3 ------------------------------------------------------------
consensus_9040#2 ------------------------------------------------------------
consensus_9040#4 ------------------------------------------------------------
consensus_9040#0 GAGACCAGTTTTAATGGATTTTGGCTGTTACTCCATCCATTCTTCCTATTGAGAACATTA 360
consensus_9040#1 ------------------------------------------------------------
consensus_9040#3 ------------------------------------------------------------
consensus_9040#2 ------------------------------------------------------------
consensus_9040#4 ------------------------------------------------------------
consensus_9040#0 GAGACGCAGAAAAATGGAAGGAGTTTGCTGAGGAAAACTGTTCACTAACTTATCGGGCTC 420
consensus_9040#1 ------------------------------------------------------------
consensus_9040#3 ------------------------------------------------------------
consensus_9040#2 ------------------------------------------------------------
consensus_9040#4 ------------------------------------------------------------
consensus_9040#0 CAGAGTTGTTTAATCCAATAACTCACGAAAACATAACCGAGAAAGCTGATGTTTGGTCCC 480
consensus_9040#1 ------------------------------------------------------------
consensus_9040#3 ------------------------------------------------------------
consensus_9040#2 ------------------------------------------------------------
consensus_9040#4 ------------------------------------------------------------
consensus_9040#0 TAGGATGTTTGTTGTATGCTTTGATTTTCTTCAAATCCCCAATGGATTTCGTTCATGCTC 540
consensus_9040#1 ---------------------AAATTGAATGTATGGTTCTGAGAAGATTTTGTCTTGTGG 39
consensus_9040#3 ------------------------------------------------------------
consensus_9040#2 ----------------GTGTAGCATTCCATAAAACANN-TTTTTCCTCTCCTTCATTTAA 43
consensus_9040#4 ------------------------------------------------------------
consensus_9040#0 GGGGTGACAGCGTTGCTCTTGCTGCTTGTTCAGCTAAT-ATACATTTCCCAATAGACTCG 599
consensus_9040#1 NTTGTACAGACCCATGTAGTGAAGCTGTTCGAGTAAAGGATGCATCAGGACATTGGAAAA 99
consensus_9040#3 ------------------------------------------------------------
consensus_9040#2 TTTTTCAGTGTTCCACCAGAATTGATAAAGTTAATGGAAGCAATGCTGTCCGCTAATCCT 103
consensus_9040#4 ------------------------------------------------------------
consensus_9040#0 TGTTCAAATGTTCCACCAGAATGGATAAAGTTAATGGAAGCAATGCTGTCCGCTAATCCT 659
consensus_9040#1 CGTTTTACGTGCGCTATAAGTTAGATACCGGGTATGTTTATAAGGTTTTCTAATAATG-- 157
consensus_9040#3 ------------------------------------------------------------
consensus_9040#2 CAAGATCGTCCTTCACTTACTCAAATTGTGGAGTCCTTCAAAAACGTACCTGAAGAAATC 163
consensus_9040#4 ------------------------------------------------------------
consensus_9040#0 CAAGATCGTCCTTCACTTACTCAAATTGTGGAGTCCTTCAAAAACGTACCTGAAGAAATC 719
consensus_9040#1 GAAGTTTTTAGGGGATTTAGCCGAATAGATCTTATTTTTGACAAAGGGTCT-AAAAGATC 216
consensus_9040#3 -----------------GAAGCAAGTTGGGATGATCAGGGAGATTCGATT--GGAAATTA 41
consensus_9040#2 ATGTATTGTAATA---ATCAAAGTGCAATAACTTATTCGTNGTAATTTCGACTCAGCTTG 220
consensus_9040#4 ------------------------------------------------------------
consensus_9040#0 ATGTATTGTAATA---ATCAAAGTGCAATAACTTATTCGTTGTAATTTCGACTCAGCTTG 776
consensus_9040#1 ATTCGCTTTAATACGTATCCTATGTCATTCAAAGGATGATGAAAGTAAGGCTTTAAAGGA 276
consensus_9040#3 GCTTCCTTTAAAGCCTTACTTTCATCATCCTTTGAATGACATAGGATACGTTTTAAAGCG 101
consensus_9040#2 ACTAAATCCCACATGAAATCTATCCGTAAAACATTTACTCTTTTACTCTTCTCTTATACT 280
consensus_9040#4 -------------------------------------------------------AGAGT 5
consensus_9040#0 ACTAAATCCCACATGAAATCTATCCGTAAAACATTTACTCTTTTACTCTTCTTTTATACT 836
consensus_9040#1 AGCTAATTTCCAATCGAATCTCCCTG-ATCATCCCGACTTGCTTCCCTGTATCGCGAGTG 335
consensus_9040#3 AATGATCTTTTATACCCTTTGTCAAAAATAAGATCTATTCGGCTAAATCCACTAAAAACC 161
consensus_9040#2 ATTTACAAAAT-------------ACTGAGAAGTCTTTCTAAA---CNNTTTACCTTCAC 324
consensus_9040#4 ATTTACAAAAC-------------AATGACAAGTCTTTATAAA---CTTTTTACCTTCAC 49
consensus_9040#0 ATTTACAAAAT-------------ACTGAGAAGTCTTTCTAAA---CTTTTTACCTTCAC 880
consensus_9040#1 GCCTACAACATGTCTCTAGACGTGAACAAGGAGCTATTTCAGAAGTTCTTTTGGTGTTAT 395
consensus_9040#3 GGTATCTAACTTATA------GCGCACGTAAAACGTTTTCCAA---TGTCCTGATGCATC 212
* * * ** * *
consensus_9040#2 TNTTATTCTCTGTACNTNATAATATTC--CACAT--AATATTGCATAGAATTGCAGGAC- 379
consensus_9040#4 TTTTATTCTCTGTACTTTTTAATATCC--CACAT--AATATTGCATAGAATTGCAGGAC- 104
consensus_9040#0 TTTTATTCTCTGTACTTTTTAATATTC--CACAT--AATATTGCATAGAATTGCAGGAC- 935
consensus_9040#1 CTTATAGCAAGGTATGTCTTAATATATGTCAGATGAAATATTACAGCGAGGTACACTGCA 455
consensus_9040#3 CTTTACTCGAACAGCTTCACTACATGGG-TCTGT---ACAACCCACAAGACAAAATCTTC 268
* * * * ** * * * ** *
consensus_9040#2 ---GGTTTTGGTTTNTCGTTCGAAAATGA-AATATAACTAAATA--------- 419
consensus_9040#4 ---GGTATTGGCTCTTCGTTCGAAAATGG-AATATACCTTG------------ 141
consensus_9040#0 ---GGTTTTGGTTTTTCGTTCGAAAATGA-AATATAACTAAATAT-------- 976
consensus_9040#1 CGTGAAATTGACCATAGATCTGCACGTAATGATATGTTCCCCTTGTACCTCAT 508
consensus_9040#3 TCAGAACCATACATTCAATTTGAATTCGTCAACGTTAAAGATTC--------- 312
* * * * * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||