cluster # 9042

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Schistosoma mansoni
cluster # 9042 cluster # 9042 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9042#0 length = 896 sequences # 6

consensus_9042#1 length = 447 sequences # 1
consensus_9042#2 length = 399 sequences # 1

consensusID : consensus_9042#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 896
fasta sequence

                              [TCGAGCTGTCTATGGACGAAATTTTAGTGTCCCCGACGAAGAGTCCAGTGCAACTGTAGGAGTGACTTTTGCCTTAAGTTCTGTGAATCAGGATAACATTGGATACTACTACGTCAGTTATGTTGCCTGTGACCTCAAAAATCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAAACAATACCTATCATCTAAAGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGTTGCCTAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTTTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTTGCTAGTGGTTTGCAATCTTCACTTCATAGCTTATTTAGTCAAGGTATAGCTACTGAAAGGTTAGCTATTGCAATCGACTCTGTCAAGCAACGCACAGAAACACTCAAGTACTCAATATCACTAGCACGCAATAAACTACACGTACTGGAAAGCAGAAAATTTACTCTAGAACAGGAATTCTTAAAGATAGATGCAAATAAAGCAGCAATCAATAGCCGGTTGCAAGTTCTAAAACAATCTTTAAAGGATGGCTATAATGACCTCAGTAAAACACGTTACGCACTGATGACTCGTATTCTTTATTTGTTAAATGAAGTTTATGGTCTTTTTATCGATGATTTAATAAATCCAGTGTACA]

[+] EMBL CD170249             [TCGAGCTGTCTATGGACGAAATTTTAGTGTCCCCGACGAAGAGTCCAGTGCAACTGTAGGAGTGACTTTTGCCTTAAGTTCTGTGAATCAGGATAACATTGGATACTACTACGTCAGTTATGTTGCCTGTGACCTCAAAAATCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAAACAATACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD116314             [                                                            AGTGACTTTTGCCTTAAGTTCTGTGAATCAGGATAACATTGGATACTACTACGTCAGTGATGTTGCCTGTGACCTCAAAAATCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAAACAATACCTATCATCTAAAGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGTTGCCTAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTTTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTTGCTAGTGGTTTGCAATCTTCACTTCATAGCTTATTTAGTCAAGGTATAGCTACTGANAGGTTAGCTATTGNCATCGACTCTGTCAAGCAACGCACAGAAACAC                                                                                                                                                                                                                                                               ]
[+] EMBL CD064790             [                                                                                                                                          AAATCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAAACAATACCTATCATCTAAAGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGTTGCCTAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTTTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTTGCTAGTGGTTTGCAATCTTCACTTCATAGCTTATTTAGTCAAGGTATAGCTACTGAAAGGTTAGCTATTGCAATCGACTCTGTCAAGCAACGCACAGAAACACTCAA                                                                                                                                                                                                                                                           ]
[+] EMBL CD064849             [                                                                                                                                             TCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAAACAATACCTATCATCTAAAGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAATGCGCGAAAATGTGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGTTGCCTAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTTTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTTGCTAGTGGTTTGCAATCTTCACTTCATAGCTTATTTAGTCAAGGTATAGCTACTGAAAGGTTAGCTATTGCAATCGACTCT                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD135399             [                                                                                                                                                                       ccttaCTCCCTAAACAATACCTATCATCTAAAGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTCCCCCCCGGGCATAATTTGTCCCCATCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD190581             [                                                                                                                                                                                                                                                                                                                                                                      CGTATTTATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGTTGCCTAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTTTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTTGCTAGTGGTTTGCAATCTTCACTTCATAGCTTATTTAGTCAAGGTATAGCTACTGAAAGGTTAGCTATTGCAATCGACTCTGTCAAGCAACGCACAGAAACACTCAAGTACTCAATATCACTAGCACGCAATAAACTACACGTACTGGAAAGCAGAAAATTTACTCTAGAACAGGAATTCTTAAAGATAGATGCAAATAAAGCAGCAATCAATAGCCGGTTGCAAGTTCTAAAACAATCTTTAAAGGATGGCTATAATGACCTCAGTAAAACACGTTACGCACTGATGACTCGTATTCTTTATTTGTTAAATGAAGTTTATGGTCTTTTTATCGATGATTTAATAAATCCAGTGTACA]




>consensus_9042#0
TCGAGCTGTCTATGGACGAAATTTTAGTGTCCCCGACGAAGAGTCCAGTGCAACTGTAGG
AGTGACTTTTGCCTTAAGTTCTGTGAATCAGGATAACATTGGATACTACTACGTCAGTTA
TGTTGCCTGTGACCTCAAAAATCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAA
ACAATACCTATCATCTAAAGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAA
CTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAAT
GCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCG
TATTTATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGTTGCCTAA
AGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTTT
AGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTTGC
TAGTGGTTTGCAATCTTCACTTCATAGCTTATTTAGTCAAGGTATAGCTACTGAAAGGTT
AGCTATTGCAATCGACTCTGTCAAGCAACGCACAGAAACACTCAAGTACTCAATATCACT
AGCACGCAATAAACTACACGTACTGGAAAGCAGAAAATTTACTCTAGAACAGGAATTCTT
AAAGATAGATGCAAATAAAGCAGCAATCAATAGCCGGTTGCAAGTTCTAAAACAATCTTT
AAAGGATGGCTATAATGACCTCAGTAAAACACGTTACGCACTGATGACTCGTATTCTTTA
TTTGTTAAATGAAGTTTATGGTCTTTTTATCGATGATTTAATAAATCCAGTGTACA

consensusID : consensus_9042#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence

                              [TCCCGGTATTCGAGTGGTGTGACCTCAAAAATCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAAACAATACCTATCATCTAAAGCTGTCTTGTTCACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGTTGCCTAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTTTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTTGCTAGTGGTTTGCAATTTT]

[+] EMBL CD064594             [TCCCGGTATTCGAGTGGTGTGACCTCAAAAATCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAAACAATACCTATCATCTAAAGCTGTCTTGTTCACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGTTGCCTAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTTTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTTGCTAGTGGTTTGCAATTTT]




>consensus_9042#1
TCCCGGTATTCGAGTGGTGTGACCTCAAAAATCCAGAATGGGATCCCATTGAAATACGTA
ATCTCCCTAAACAATACCTATCATCTAAAGCTGTCTTGTTCACTTTTTTTCTATCGCATA
GAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAA
ACTCAGAAATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGA
TGGGCGGGCGTATTTATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATC
TGTTGCCTAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTC
AAAAGTTTTTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGC
AAAATCTTGCTAGTGGTTTGCAATTTT

consensusID : consensus_9042#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [CCTAACCAATACCTATCATCTAAAGGTGTGAAATTGATTTCTGAAACATCTGTATCAGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAGTACGTCATAATTTATATAATTGTTGTTTAGATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATATATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGGTAGCATTCTTATTAAATAATTGATTTCTAGTTGCATAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTT]

[-] EMBL CD184377             [CCTAACCAATACCTATCATCTAAAGGTGTGAAATTGATTTCTGAAACATCTGTATCAGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAGTACGTCATAATTTATATAATTGTTGTTTAGATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATATATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGGTAGCATTCTTATTAAATAATTGATTTCTAGTTGCATAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTT]




>consensus_9042#2
CCTAACCAATACCTATCATCTAAAGGTGTGAAATTGATTTCTGAAACATCTGTATCAGCT
GTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTA
GTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAGTACGTCATAATTTATATAATTGT
TGTTTAGATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGAT
GGGCGGGCGTATATATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCT
GGTAGCATTCTTATTAAATAATTGATTTCTAGTTGCATAAAGGTAGATCCCTCCTTGCCT
CCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9042#0      TCGAGCTGTCTATGGACGAAATTTTAGTGTCCCCGACGAAGAGTCCAGTGCAACTGTAGG 60
consensus_9042#1      ------------------------------------------------------------
consensus_9042#2      ------------------------------------------------------------
                                                                                  

consensus_9042#0      AGTGACTTTTGCCTTAAGTTCTGTGAATCAGGATAACATTGGATACTACTACGTCAGTTA 120
consensus_9042#1      ------------------------------------------------TCCCGGTATTCG 12
consensus_9042#2      ------------------------------------------------------------
                                                                                  

consensus_9042#0      TGTTGCCTGTGACCTCAAAAATCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAA 180
consensus_9042#1      AGTGG--TGTGACCTCAAAAATCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAA 70
consensus_9042#2      ------------CCTAACCAATACCTA------TCATCTAAAGGTGTGAAATTGATTTCT 42
                                  *** *  *** *  *      **   *  *  *  * ***     *  

consensus_9042#0      ACAATACCTATCATCTAAAGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAA 240
consensus_9042#1      ACAATACCTATCATCTAAAGCTGTCTTGTTCACTTTTTTTCTATCGCATAGAGAAAGCAA 130
consensus_9042#2      GAAACATCTGT-ATC---AGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAA 98
                        ** * ** * ***   ************ *****************************

consensus_9042#0      CTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAA-- 298
consensus_9042#1      CTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAA-- 188
consensus_9042#2      CTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAGT 158
                      **********************************************************  

consensus_9042#0      -----------------------------ATGCGCGAAAATATGTGTATCTCTGACTCAA 329
consensus_9042#1      -----------------------------ATGCGCGAAAATATGTGTATCTCTGACTCAA 219
consensus_9042#2      ACGTCATAATTTATATAATTGTTGTTTAGATGCGCGAAAATATGTGTATCTCTGACTCAA 218
                                                   *******************************

consensus_9042#0      GAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTTTGACC 389
consensus_9042#1      GAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTTTGACC 279
consensus_9042#2      GAGATCAGGTTTACTTCCAGATGGGCGGGCGTATATATGCTTCTCGTGAACACTTTGACC 278
                      ********************************** *************************

consensus_9042#0      CGGGCATAATTTGTCCCCATCTG-------------------------------TTGCCT 418
consensus_9042#1      CGGGCATAATTTGTCCCCATCTG-------------------------------TTGCCT 308
consensus_9042#2      CGGGCATAATTTGTCCCCATCTGGTAGCATTCTTATTAAATAATTGATTTCTAGTTGCAT 338
                      ***********************                               **** *

consensus_9042#0      AAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTT 478
consensus_9042#1      AAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTT 368
consensus_9042#2      AAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTT 398
                      ************************************************************

consensus_9042#0      TTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTT 538
consensus_9042#1      TTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTT 428
consensus_9042#2      T----------------------------------------------------------- 399
                      *                                                           

consensus_9042#0      GCTAGTGGTTTGCAATCTTCACTTCATAGCTTATTTAGTCAAGGTATAGCTACTGAAAGG 598
consensus_9042#1      GCTAGTGGTTTGCAATTTT----------------------------------------- 447
consensus_9042#2      ------------------------------------------------------------
                                                                                  

consensus_9042#0      TTAGCTATTGCAATCGACTCTGTCAAGCAACGCACAGAAACACTCAAGTACTCAATATCA 658
consensus_9042#1      ------------------------------------------------------------
consensus_9042#2      ------------------------------------------------------------
                                                                                  

consensus_9042#0      CTAGCACGCAATAAACTACACGTACTGGAAAGCAGAAAATTTACTCTAGAACAGGAATTC 718
consensus_9042#1      ------------------------------------------------------------
consensus_9042#2      ------------------------------------------------------------
                                                                                  

consensus_9042#0      TTAAAGATAGATGCAAATAAAGCAGCAATCAATAGCCGGTTGCAAGTTCTAAAACAATCT 778
consensus_9042#1      ------------------------------------------------------------
consensus_9042#2      ------------------------------------------------------------
                                                                                  

consensus_9042#0      TTAAAGGATGGCTATAATGACCTCAGTAAAACACGTTACGCACTGATGACTCGTATTCTT 838
consensus_9042#1      ------------------------------------------------------------
consensus_9042#2      ------------------------------------------------------------
                                                                                  

consensus_9042#0      TATTTGTTAAATGAAGTTTATGGTCTTTTTATCGATGATTTAATAAATCCAGTGTACA 896
consensus_9042#1      ----------------------------------------------------------
consensus_9042#2      ----------------------------------------------------------