cluster # 9043

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9043 cluster # 9043 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9043#0 length = 698 sequences # 5

consensus_9043#1 length = 644 sequences # 2
consensus_9043#2 length = 381 sequences # 1

consensusID : consensus_9043#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 698
fasta sequence

                              [ACAGGAGGACCGGTTAGCGCTCTAGACTGCTCGTACGGTTTCGTGTGTCACTGTTCCAATCGATAATTCGCTGCTCCCTGATTGGCGGTCTCATCAAGTCACACATTAACTAGACATCCAATCGGCCACAAGATTTAACACTTCCAAATCTTCTTGAATAGGAGGTATAGTATGTTTGCTGTTACTTCAGTGTCTAACTTCAGTGCTTCAGTTGGTATATTGTCAAGTCCCGCCGTTTTGTCTGATGGTCACCCTGAATTTTTCGATCGTTGGTGAAGTGACATCCATAGGAAGGTCTGTGTGTGCTTCTTCGATCCCCGGTGGATTCAATGGAACCGGTCTATTCAACAGTTCCTCGAAGTATTCTGCCCATCTTTTCCTTCGTTCTTGAATCTCAATGATTGTCTTTCCTTCTTTGTCCTTGACGGGTCTCTCCGGTTTACTATATCTCCGTGCTAGTTTCTTCGTTGTATCATATGGTTGTTTCATATTCCCTTCTCTTGCAGATGTTTTTTTGTCGTTGCTAAGTCTTCCACATATTTCTGCTTGTCGACTCTTATGCTCTTCTTCACTTGCTTGTTTGTCTCTGTGTATTTAGTTTCGTGCCTTGACTTTCTCTGTTCTGGTTCGGCTGTTGTTAATTGCTTTCTTCCTGTTCTTCTTTTCTTGAATATTGACCAAGGTTTCGATATAGATCC]

[+] EMBL CD085968             [ACAGGAGGACCGGTTAGCGCTCTAGACTGCTCGTACGGTTTCGTGTGTCACTGTTCCAATCGATAATTCGCTGCTCCCTGATTGGCGGTCTCATCAAGTCACACATTAACTAGACATCCAATCGGCCACAAGATTTAACACTTCCAAATCTTCTTGAATAGGAGGTATAGTATGTTTGCTGTTACTTCAGTGTCTAACTTCAGTGCTTCAGTTGGTATATTGTCAAGTCCCGCCGTTTTGTCTGATGGTCACCCTGAATTTTTCGATCGTTGGTGAAGTGACATCCATAGGAAGGTCTGTGTGTGCTTCTTCGATCCCCGGTGGATTCAATGGAACCGGTCTATTCAACAGTTCCTCGAAGTATTCTGCCCATCTTTTCCTTCGTTCTTGAATCTCAATGATTGTCTTTCCTTCTTTGTCCTTGACGGGTCTCTCCGGTTTACTATATCTCCGTGCTAGTTTCTTCGTTGTATCATATGGTTGTTTCATATTCCCTTCTCTTGCAGATGTTTTTTTGTCGTTGCTAAGTCTTCCACATANTTCTGCTTGTCGACTCTTATGCTCTTCTTCACTTGCTTGTTTGTCTCTGTGTATTTAGTTTCGTGCCTTGACTTTCTCTGTTCTGGTTCGGCTGTTGT                                                            ]
[+] EMBL CD086011             [                  GCTCTAGACTGCTCGTACGGTTTCGTGTGTCACTGTTCCAATCGATAATTCGCTGCTCCCTGATTGGCGGTCTCATCAAGTCACACATTAACTAGACATCCAATCGGCCACAAGATTTAACACTTCCAAATCTTCTTGAATAGGAGGTATAGTATGTTTGCTGTTACTTCAGTGTCTAACTTCAGTGCTTCAGTTGGTATATTGTCAAGTCCCGCCGTTTTGTTTGATGGTCACCCTGAATTTTTCGATCGTTGGTGAAGTGACATCCATAGGAAGGTCTGTGTGTGCTTCTTCGATCCCCGGTGGATTCAATGGAACCGGTCTATTCAACAGTTCCTCGAAGTATTCTGCCCATCTTTTCCTTCGTTCTTGAATCTCAATGATTGTCTTTCCTTCTTTGTCCTTGACGGGTCTCTCCGGTTTACTATATCTCCGTGCTAGTTTCTTCGTTGTATCATATGGTTGTTTCATATTCCCTTCTCTTGCAGATGTTTTTTTGTCGTTGCTAAGCCTTCCACATATTTCTGCTTGTCGACTCTTATGCTCTTCTTCACTTGCTTGTTTGTCTCTGTGTATTTAGTTTCGTGCCTTGACTTTCTCTGTTCTGGTTCGGCTGTTG                                                             ]
[+] EMBL CD085891             [                  GCTCTAGACTGCTCGTACGGTTTCGTGTGTCACTGTTCCAATCGATAATTCGCTGCTCCCTGATTGGCGGTCTCATCAAGTCACACATTAACTAGACATCCAATCGGCCACAAGATTTAACACTTCCAAATCTTCTTGAATAGGAGGTATAGTATGTTCGCTGTTACTTCAGTGTCTAACTTCAGTGCTTCAGTTGGTATATTGTCAAGTCCCGCCGTTTTGTCTGATGGTCACCCTGAATTTTTCGATCGTTGGTGAAGTGACATCCATAGGAAGGTCTGTGTGTGCTTCTTCGATCCCCGGTGGATTCAATGGAACCGGTCTATTCAACAGTTCCTCGAAGTATTCTGCCCATCTTTTCCTTCGTTCTTGAATCTCAATGATTGTCTTTCCTTCTTTGTCCTTGACGGGTCTCTCCGGTTTACTATATCTCCGTGCTAGTTTCTTCGTTGTATCATATGGTTGTTTCATATTCCCTTCTCTTGCAGATGTTTTTTTGTCGTTGCTAAGTCTTCCACATATTTCTGCTTGTCGACTCTTATGCTCTTCTTCACTTGCTTGTTTGTCTCTGTGTATTTAGTTCCGTGCCTTGGCTTTCTCTGTTCTGGTTCGGCTGTTG                                                             ]
[+] EMBL CD086229             [                                                                         CTCCCTGATCGGCGGTCTCATCAAGTCACACATTAACTGGACGTCCTTTTACACACAAGATTTAACACTTCCAAATCTTCTTGAATAGGAGGTATAGTATGTTTGCTGTTACTTCAGTGTCTAACTTCAGTGCTTCAGTTGGTATATTGCCAAGTCCCGCCGTTTTGTCTGATGGTCACCCTGAATTTTTCGATCGTTGGTGAAGTGACATCCATAGGAAGGTCTGTGTGTGCTTCTTCGATCCCCGGTGGATTCAATGGAACCGGTCTATTCAACAGTTCCTCGAAGTATTCTGCCCATCTTTTCCTTC                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD090189             [                                                                                                                                                                                                                                                                                        ACATCCATAGGAAGGTCTGTGTGTGCTTCTTCGATCCCCGGTGGATTCAATGGAACTGGTCTATTCAACAGTTCCTCGAAGTATTCTGCCCATCTTTTCCTCCGTTCTTGAATCCCAATGATTGTCTTTCCTTCTTTGTCCTTGACGGGTCTCTCCGGTTTACTATATCTCCGTGCTAGTTTCTTCGTTGTATCATATGGTTGTTTCATATTCCCTTCTCTTGCAGATGTTTTTTTGTCGTTGCTAAGTCTTCCACATATTTCTGCTTGTCGACTCTTATGCTCTTCTTCACTTGCTTGTTTGTCTCTGTGTATTTAGTTTCGTGCCTTGACTTTCTCTGTTCTGGTTCGGCTGTTGTTAATTGCTTTCTTCCTGTTCTTCTTTTCTTGAATATTGACCAAGGTTTCGATATAGATCC]




>consensus_9043#0
ACAGGAGGACCGGTTAGCGCTCTAGACTGCTCGTACGGTTTCGTGTGTCACTGTTCCAAT
CGATAATTCGCTGCTCCCTGATTGGCGGTCTCATCAAGTCACACATTAACTAGACATCCA
ATCGGCCACAAGATTTAACACTTCCAAATCTTCTTGAATAGGAGGTATAGTATGTTTGCT
GTTACTTCAGTGTCTAACTTCAGTGCTTCAGTTGGTATATTGTCAAGTCCCGCCGTTTTG
TCTGATGGTCACCCTGAATTTTTCGATCGTTGGTGAAGTGACATCCATAGGAAGGTCTGT
GTGTGCTTCTTCGATCCCCGGTGGATTCAATGGAACCGGTCTATTCAACAGTTCCTCGAA
GTATTCTGCCCATCTTTTCCTTCGTTCTTGAATCTCAATGATTGTCTTTCCTTCTTTGTC
CTTGACGGGTCTCTCCGGTTTACTATATCTCCGTGCTAGTTTCTTCGTTGTATCATATGG
TTGTTTCATATTCCCTTCTCTTGCAGATGTTTTTTTGTCGTTGCTAAGTCTTCCACATAT
TTCTGCTTGTCGACTCTTATGCTCTTCTTCACTTGCTTGTTTGTCTCTGTGTATTTAGTT
TCGTGCCTTGACTTTCTCTGTTCTGGTTCGGCTGTTGTTAATTGCTTTCTTCCTGTTCTT
CTTTTCTTGAATATTGACCAAGGTTTCGATATAGATCC

consensusID : consensus_9043#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 644
fasta sequence

                              [ACACATTACGCCGAGATATAGAGACAGACATGAGAAGAATGAACAAAAATTGGATAGAACTAGAAAGGAAGGCCCGGGACAGAGTGGGTTGGAGAATGCTGGTCGTCAGCCTATGTTCCATTGGGAGTAACAGGCGTAAGTAAGTAAGTATTTTAATTCTTTGTTGATTAGCTTAGTGTATAATGAGTTGATGCTTAACGTGAACCATACAGTATTCAAGTCTCCTGGTATACAGCAACACTTCAATACAGATACATCTAAATGATGAATTCCAAATCGGACAGAATACTTATCTTAGATTCCACTTTTAAGCACAGATTCTCTGTTAGATCTGAACAAGGAATAACTGAATGGTTACTGCTAGGAATGATTTATGGATTATTGTTTAGTAACTAAACCATATGCAATTTATGCATATTCCTGTTATCATAAGCTTTCATTTGATCTATTGACTCCTATTATACGATTTAGTAGTCTTAAGTTAGTCCCAATCTATTAGCTATAGTCTCCTATCCTGAAAGTCACCTTTGGGTTGATCTTGTATAATTCTTATTTGTCATTTTATGATGTGATGTGGTCAAGCACATCTGTAAATAAACTACATATATCTCAAATATGAGTCTTGTAGTGAAGGCTGATATATG]

[+] EMBL CD168088             [ACACATTACGCCGAGATATAGAGACAGACATGAGAAGAATGAACAAAAATTGGATAGAACTAGAAAGGAAGGCCCGGGACAGAGTGGGTTGGAGAATGCTGGTCGTCAGCCTATGTTCCATTGGGAGTAACAGGCGTAAGTAAGTAAGTATTTTAATTCTTTGTTGATTAGCTTAGTGTATAATGAGTTGATGCTTAACGTGAACCATACAGTATTCAAGTCTCCTGGTATACAGCAACACTTCAATACAGATACATCTAAATGATGAATTCCAAATCGGACAGAATACTTATCTTAGATTCCACTTTTAAGCACAGATTCTCTGTTAGATCTGAACAAGGAATAACTGAATGGTTACTGCTAGGAATGATTTATGGATTATTGTTTAGTAACTAAACCATATGCAATTTATGCATATTCCTGTTATCATAAGCTTTCATTTGATCTATTGACTCCTATTATACGATTTAGTAGTCTTAAGTTAGTCCCAATCTATTAGCTA                                                                                                                                              ]
[-] EMBL CD068509             [                                                                                                   TGGTCGTCAGCCTATGTTCCATTGGGAGTAACAGGCGTAAGTAAGTAAGTATTTTAATTCTTTGTTGATTAGCTTAGTGTATAATGAGTTGATGCTTAACGTGAACCATACAGTATTCAAGTCTCCTGGTATACAGCAACACTTCAATACAGATACATCTAAATGATGAATTCCAAATCGGACAGAATACTTATCTTAGATTCCACTTTTAAGCACAGATTCTCTGTTAGATCTGAACAAGGAATAACTGAATGGTTACTGCTAGGAATGATTTATGGATTATTGTTTAGTAACTAAACCATATGCAATTTATGCATATTCCTGTTATCATAAGCTTTCATTTGATCTATTGACTCCTATTATACGATTTAGTAGTCTTAAGTTAGTCCCAATCTATTAGCTATAGTCTCCTATCCTGAAAGTCACCTTTGGGTTGATCTTGTATAATTCTTATTTGTCATTTTATGATGTGATGTGGTCAAGCACATCTGTAAATAAACTACATATATCTCAAATATGAGTCTTGTAGTGAAGGCTGATATATG]




>consensus_9043#1
ACACATTACGCCGAGATATAGAGACAGACATGAGAAGAATGAACAAAAATTGGATAGAAC
TAGAAAGGAAGGCCCGGGACAGAGTGGGTTGGAGAATGCTGGTCGTCAGCCTATGTTCCA
TTGGGAGTAACAGGCGTAAGTAAGTAAGTATTTTAATTCTTTGTTGATTAGCTTAGTGTA
TAATGAGTTGATGCTTAACGTGAACCATACAGTATTCAAGTCTCCTGGTATACAGCAACA
CTTCAATACAGATACATCTAAATGATGAATTCCAAATCGGACAGAATACTTATCTTAGAT
TCCACTTTTAAGCACAGATTCTCTGTTAGATCTGAACAAGGAATAACTGAATGGTTACTG
CTAGGAATGATTTATGGATTATTGTTTAGTAACTAAACCATATGCAATTTATGCATATTC
CTGTTATCATAAGCTTTCATTTGATCTATTGACTCCTATTATACGATTTAGTAGTCTTAA
GTTAGTCCCAATCTATTAGCTATAGTCTCCTATCCTGAAAGTCACCTTTGGGTTGATCTT
GTATAATTCTTATTTGTCATTTTATGATGTGATGTGGTCAAGCACATCTGTAAATAAACT
ACATATATCTCAAATATGAGTCTTGTAGTGAAGGCTGATATATG

consensusID : consensus_9043#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [ACGTGATAAGACCACCAATCAGAGAGCTGCGAATTATCGATTGGAACAGTGACACACGAAAACCGTACGAGCAGTCTAGAGCGCTTATCGATCCGGCTTCTGCCTAGCCCAGCCAGTTAAGTTCAGAACACCAATAACAGCCTCTGCAATCTGAATCATTATTCACAAACATACTGGGTTTGTATACCAATCAAACAGACCACATCGTACCATAAAATAGAAAATAACATTTGTACAAGGTTTGGCCAAATGTGACTGTGAATAGTGGGGACAGTAATCAATAGACTGGGGATAACTCAAGAATGGTAAATTGTATGATAATAGTTCATAGGTCAAAATAAAGCTTATGATAAGAGGAATACGAATATGAATAGTTTAGTT]

[+] EMBL CD092647             [ACGTGATAAGACCACCAATCAGAGAGCTGCGAATTATCGATTGGAACAGTGACACACGAAAACCGTACGAGCAGTCTAGAGCGCTTATCGATCCGGCTTCTGCCTAGCCCAGCCAGTTAAGTTCAGAACACCAATAACAGCCTCTGCAATCTGAATCATTATTCACAAACATACTGGGTTTGTATACCAATCAAACAGACCACATCGTACCATAAAATAGAAAATAACATTTGTACAAGGTTTGGCCAAATGTGACTGTGAATAGTGGGGACAGTAATCAATAGACTGGGGATAACTCAAGAATGGTAAATTGTATGATAATAGTTCATAGGTCAAAATAAAGCTTATGATAAGAGGAATACGAATATGAATAGTTTAGTT]




>consensus_9043#2
ACGTGATAAGACCACCAATCAGAGAGCTGCGAATTATCGATTGGAACAGTGACACACGAA
AACCGTACGAGCAGTCTAGAGCGCTTATCGATCCGGCTTCTGCCTAGCCCAGCCAGTTAA
GTTCAGAACACCAATAACAGCCTCTGCAATCTGAATCATTATTCACAAACATACTGGGTT
TGTATACCAATCAAACAGACCACATCGTACCATAAAATAGAAAATAACATTTGTACAAGG
TTTGGCCAAATGTGACTGTGAATAGTGGGGACAGTAATCAATAGACTGGGGATAACTCAA
GAATGGTAAATTGTATGATAATAGTTCATAGGTCAAAATAAAGCTTATGATAAGAGGAAT
ACGAATATGAATAGTTTAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9043#1      ----------------ACACATTACGCCGAG-ATATAGAGACAGACATGAGAAGAATGAA 43
consensus_9043#2      ------------------------------------------------------------
consensus_9043#0      ACAGGAGGACCGGTTAGCGCTCTAGACTGCTCGTACGGTTTCGTGTGTCACTGTTCCAAT 60
                                                                                  

consensus_9043#1      CAAAAATTGGATAGAACTAGAAAGGAAGGCCCGGGACAGAGTGGGTTGGAGAATG--CTG 101
consensus_9043#2      -----------------------------------ACGTGATAAGACCACCAAT----CA 21
consensus_9043#0      CGATAATTCGCTGCTCCCTGATTGGCGGTCTCATCAAGTCACACATTAACTAGACATCCA 120
                                                         *               *        

consensus_9043#1      GTCGTCAGCCT-ATGTTCCATTGGGA--GTAACAGGCGTAAGTAA-GTAAGTATTTTAAT 157
consensus_9043#2      GAGAGCTGCGA-ATTATCGATTGGAACAGTGACACACGAAAACCGTACGAGCAGTCTAGA 80
consensus_9043#0      ATCGGCCACAAGATTTAACACTTCCAAATCTTCTTGAATAGGAGGTATAGTATGTTTGCT 180
                           *  *   **     * *   *      *      *              * *   

consensus_9043#1      TC---TTTGTTGATTAGCTT-AGTGTAT-AATGAGTTGATGCTTAACGTGAACCATACAG 212
consensus_9043#2      GCG--CTTATCGATCCGGCT-TCTGCCT-AGCCCAGCCA-GTTAAGTTCAGAACAC-CAA 134
consensus_9043#0      GTTACTTCAGTGTCTAACTTCAGTGCTTCAGTTGGTATATTGTCAAGTCCCGCCGTTTTG 240
                            *    *       *   **  * *        *   * *        *      

consensus_9043#1      TATTCAAGTCTCCTGGTATACAGC-AACACTTC--AATACAGATACATCTAAATGA---T 266
consensus_9043#2      TAAC--AGCCTCT--GCAATCTGA-ATCATT-----ATTCACAAACATACTGGGTT---T 181
consensus_9043#0      TCTGATGGTCACCCTGAATTTTTCGATCGTTGGTGAAGTGACATCCATAGGAAGGTCTGT 300
                      *      * * *   * *       * *  *     *   * *  ***           *

consensus_9043#1      GAATTCCAAATCGGACAGAATACTTATCTTAGATTCCACTTTTAAGCACAGATTCTCTGT 326
consensus_9043#2      GTATACCAA-TCAAACAGACCAC--ATCGT--ACCATAAAATAGAAAATAACATTTGTAC 236
consensus_9043#0      GTGTGCTTCTTCGATCCCCGGTGGATTCAATGGAACCGGTCTATTCAACAGTTCCTCGAA 360
                      *  * *    **   *          **             *     * *     *    

consensus_9043#1      TAGATCTGAACAAGGAATAACTGAATGGTTACTGCTAGGAATGATTTATGGATTATTGTT 386
consensus_9043#2      AAGGTTTGGCCAAATG-TGACTG--TGAATAGTGGGGACAGTAATCAATAGACTGGGG-- 291
consensus_9043#0      GTATTCTGCCCATCTTTTCCTTCGTTCTTGAATCTCAATGATTGTCTTTCCTTCTTTGTC 420
                          * **  **     *   *   *    * *        *  *   *        *  

consensus_9043#1      T------AGTAACTAAACCATATGCAATTTATGCA------TATTCCTGTTATCATAAGC 434
consensus_9043#2      --------ATAACTCAAGAATGGTAAATT---GTA------TGATAATAGT-TCATAGG- 332
consensus_9043#0      CTTGACGGGTCTCTCCGGTTTACTATATCTCCGTGCTAGTTTCTTCGTTGTATCATATGG 480
                               *  **      *     **    *        *  *  *  * ***** * 

consensus_9043#1      TTTCATTTGATCTATTGACTCCTATTATACGATTTAGT-AGTCTTAAGTTAGTCCCAATC 493
consensus_9043#2      TCAAAATAAAGCTTATGATAAGAGGAATACGAATATGA-ATAGTTTAGTT---------- 381
consensus_9043#0      TTGTTTCATATTCCCTTCTCTTGCAGATGTTTTTTTGTCGTTGCTAAGTCTTCCACATAT 540
                      *        *     *          **     *  *       * ***           

consensus_9043#1      TATTAGCTATAGTCTCCTATCCTGAAAGTCACCTTTGGGTTGATCTTGTATAATTCTTAT 553
consensus_9043#2      ------------------------------------------------------------
consensus_9043#0      TTCTGCTTGTCGACTCTTATGCTCTTCTTCACTT---GCTTGTTTGTCTCTGTGTATTTA 597
                                                                                  

consensus_9043#1      TTGTCATTTTATGATGTGATGTGGTCAAGCACATCTGTAAATAAACTACATATATCTCAA 613
consensus_9043#2      ------------------------------------------------------------
consensus_9043#0      GTTTCGTGCCTTGACTTTCTCTGTTCTGGTTCGGCTGTTGTTAA-TTGCTTTCTTCCTGT 656
                                                                                  

consensus_9043#1      ATATGAGTCTTGTAGTGAAGGCTGATATATG----------- 644
consensus_9043#2      ------------------------------------------
consensus_9043#0      TCTTCTTTTCTTGAATATTGACCAAGGTTTCGATATAGATCC 698