cluster # 9044

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Schistosoma mansoni
cluster # 9044 cluster # 9044 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9044#0 length = 793 sequences # 7

consensus_9044#1 length = 612 sequences # 1

consensusID : consensus_9044#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 793
fasta sequence

                              [CATTGATTTTCGTTACATTTCGAAGTTCGGAAAATTTTACAAAGACGAAATATCAGGATTATTATGAAAATCATATTACGCGGAAATCAGTGATTAATTTGCAGAGCAGCAACAAAAAGGTCATTAGTAAAATAATGTGATGAAAGTAAAATAAATTACAGCCAAATATCATTACATGTTGCACAAGTTTAGTATAAAAGTAGGCAAATCGATTTACACAGTTTTGGAATGTTATGAAATAAAAAGTTGATAAAGAAAGCACAACTTAACAATATAAGCATGGGGTATAAAATAAAGTTAGTAGATCACAGAGATAAAGTTGAGTTGTTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCATGCAAGAATTGAATTAAGAAATGCAAAATGTATGTGTAGATACTGGGAATATTAATCTTATTTCGCTGTCTAGTGACCGAATAGGCGCACCATTTTGTACGTGGTAATCAATGAGATGTTGTATACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATGTCTATATTTTCCGTCTTGAAGGCCGCTTAATACAAACTGACCGGGCTGCTGAATGCTAGCACGTACAAGAAAGTCCCCATCATAACGCAACAAATTTTCGGCTTGTGATCTGGACATTTTACCAACATACCAAGGTTCACCGACTGGTTCTAAATGTTCAAAATTTGGAAGTCCAACCGGTGCTTTTATATTAGAGATTGATTTGACACCGGCGACTTTGTTAATTTTGCGGGAAGGTTG]

[+] EMBL CD080005             [CATTGATTTTCGTTACATTTCGAAGTTCGGAAAATTTTACAAAGACGAAATATCAGGATTATTATGAAAATCATATTACGCGGAAATCAGTGATTAATTTGCAGAGCAGCAACAAAAAGGTCATTAGTAAAATAATGTGATGAAAGTAAAATAAATTACAGCCAAATATCATTACATGTTGCACAAGTTTAGTATAAAAGTAGGCAAATCGATTTACACAGTTTTGGAATGTTATGAAATAAAAAGTTGATAAAGAAAGCACAACTTAACAATATAAGCATGGGGTATAAAATAAAGTTAGTAGATCACAGAGATAAAGTTGAGTTGTTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCATGCAAGAATTGAATTAAGAAATGCAAAATGTATGTGTAGATACTGGGAATATTAATCTTATTTCGCTGTCTAGTGACCGAATAGGCGCACCATTTTGTACGTGGTAATCAATGAGATGTTGTATACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATGTCTATATTTTCCGTCTTGAAGGCCGCTTAATACAAACTGACCGGGCTGCTGAATGCTAn                                                                                                                                                                                     ]
[+] EMBL CD152744             [                                                                                                                   AAAGGTCATTAGTAAAATAATGTGATGAAAGTAAAATAAATTACAGCCAAATATCATTACATGTTGCACAAGTTTAGTATAAAAGTAGGCAAATCGATTTACACAGTTTTGGAATGTTATGAAATAAAAAGTTGATAAAGAAAGCACAACTTAACAATATAAGCATGGGGTATAAAATAAAGTTAGTAGATCACAGAGATAAAGTTGAGTTGTTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCATGCAAGAATTGAATTAAGAAATGCAAAATGTATGTGTAGATACTGGGAATATTAATCTTATTTCGCTGTCTAGTGACCGAATAGGCGCACCATTTTGTACGTGGTAATCAATGAGATGTTGTATACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATG                                                                                                                                                                                                                                                ]
[+] EMBL CD197214             [                                                                                                                                                                                                                                                                                                                                 GAGTTGTTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCATGCAAGAATTGAATTAAGAAATGCAAAATGTATGTGTAGATACTGGGAATATTAATCTTATTTCGCTGTCTAGTGACCGAATAGGCGCACCATTTTGTACGTGGTAATCAATGAGATGTTGTATACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATGTCTATATTTTCCGTCTTGAAGGCCGCTTAATACAAACTGACCGGGCTGCTGAATGCTAGCACGTACAAGAAAGTCCCCATCATAACGCAACAAATTTTCGGCTTGTGATCTGGACATTTTACCAACATACCAAGGTTCACCGACTGGTTCTAAATGTTCAAAATTTGGAAGTCCAACCGGTGCTTTTATATTAGAGATTGATTTGACACCGGCGAC                        ]
[+] EMBL CD197007             [                                                                                                                                                                                                                                                                                                                                  AGTTGTTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCATGCAAGAATTGAATTAAGAAATGCAAAATGTATGTGTAGATACTGGGAATATTAATCTTATTTCGCTGTCTAGTGACCGAATAGGCGCACCATTTTGTACGTGGTAATCAATGAGATGTTGTATACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATGTCTATATTTTCCGTCTTGAAGGCCGCTTAATACAAACTGACCGGGCTGCTGAATGCTAGCACGTACGAGAAAGTCCCCATCATAACGCAACAAATTTTCGGCTTGTGATCTGGACATTTTACCAACATACCAAGGTTCACCGACTGGTTCTAAATGTTCCAAATTTGGAAGTCCAACCGGTGCTTTTATATTAGAGATTG                                        ]
[-] EMBL CD140683             [                                                                                                                                                                                                                                                                                                                                   tTTGTTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCATGCAAGAATTGAATTAAGAAATGCAAAATGTATGTGTAGATACTGGGAATATTAATCTTATTTCGCTGTCTAGTGACCGAATAGGCGCACCATTTTGTACGTGGTAATCAATGAGATGTTGTATACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATGTCTATATTTTCCGTCTTGAAGGCCGCTTAATACAAACTGACCGGGCTGCTGAATGCTAGCACGTACAAGAAAGTCCCCATCATAACGCAACAAATTTTCGGCTTGTGATCTGGACATTTTACCAACATACCAAGGTTCACCGACTGGTTCTAAATGTTCAAAATTTGGAAGTCCAACCGGTGCTTTTATATTAGAGATTGATTTGACACCGGCGACTTTGTTAATTTTGCGGGAAGGTTG]
[-] EMBL CD196966             [                                                                                                                                                                                                                                                                                                                                                                   CATGTCAAAGATCATGCAAGAATTGAATTAAGAAATGCAAAATGTATGTGTAGATACTGGGAATATTAATCTTATTTCGCTGTCTAGTGACCGAATAGGCGCACCATTTTGTACGTGGTAATCAATGAGATGTTGTATACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATGTCTATATTTTCCGTCTTGAAGGCCGCTTAATACAAACTGACCGGGCTGCTGAATGCTAGCACGTACAAGAAAGTCCCCATCATAACGCAACAAATTTTCGGCTTGTGATCTGGACATTTTACCAACATACCAAGGTTCACCGACTGGTTCTAAATGTTCAAAATTTGGAAGTCCAACCGGTGCTTTTATATTAGAGATTGATTTGACACCGGCGACTTTGTTAATTTTGCGGGAAGGTTG]
[+] EMBL CD119396             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TAGGCGCACCATTTTGTACGTGGTAATCAATGAGATGTTGTATACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATGTCTATATTTTCCGTCTTGAAGGCCGCTTAATACAAACTGACCGGGCTGCTGAATGCTAGCACGTACAAGAAAGTTCCCATCATAACGCAACAAATTTTCGGCTTGTGATCTGGACATTTTACCAACATACCAAGGTTCACCGAC                                                                                                ]




>consensus_9044#0
CATTGATTTTCGTTACATTTCGAAGTTCGGAAAATTTTACAAAGACGAAATATCAGGATT
ATTATGAAAATCATATTACGCGGAAATCAGTGATTAATTTGCAGAGCAGCAACAAAAAGG
TCATTAGTAAAATAATGTGATGAAAGTAAAATAAATTACAGCCAAATATCATTACATGTT
GCACAAGTTTAGTATAAAAGTAGGCAAATCGATTTACACAGTTTTGGAATGTTATGAAAT
AAAAAGTTGATAAAGAAAGCACAACTTAACAATATAAGCATGGGGTATAAAATAAAGTTA
GTAGATCACAGAGATAAAGTTGAGTTGTTGGTATATCGCCACTGAATTGTGCACGCATGT
CAAAGATCATGCAAGAATTGAATTAAGAAATGCAAAATGTATGTGTAGATACTGGGAATA
TTAATCTTATTTCGCTGTCTAGTGACCGAATAGGCGCACCATTTTGTACGTGGTAATCAA
TGAGATGTTGTATACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGG
CCAGTAATAAATGTCTATATTTTCCGTCTTGAAGGCCGCTTAATACAAACTGACCGGGCT
GCTGAATGCTAGCACGTACAAGAAAGTCCCCATCATAACGCAACAAATTTTCGGCTTGTG
ATCTGGACATTTTACCAACATACCAAGGTTCACCGACTGGTTCTAAATGTTCAAAATTTG
GAAGTCCAACCGGTGCTTTTATATTAGAGATTGATTTGACACCGGCGACTTTGTTAATTT
TGCGGGAAGGTTG

consensusID : consensus_9044#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence

                              [TTGAAAACGAACATGAAATGAATTGTCACACTTCATTGATTTTCGTTACATTTCGAAGTTCGGANAATTTTACAAAGACGAAATATCAGGATTATTATGAAAATCATATTACGCGGAAATCAGTGATTAATTTGCAGAGCAGCAACAAAAAGGTCATTAGTAAAATAATGTGATGAAAGTAAAATAAATTACAGCCAAATATCATTACATGTTGCACAAGTTTAGTATAAAAGTAGGCAAATCGATTTACACAGTTTTGGAATGTTATGAAATAAAAAGTTGATAAAGAAAGCACAACTTAACAATATAAGCATGGGGTATAAAATAAAGTTAGTAGATCACAGAGATAAAGTTGAGTTGTTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCCTGAAATTCAAAGATGTTGAGATTATTTACATGATATGATAACAGCTGACTGCTTAAATTAACTTAAAAGTTCAGCAAAGATTATTAGTTTATCCGGAAAGCTGCATTAATCATAGCACTGGACAGTAAAATCGCTTAGACAAAATGTAGTTATACAAGCCCCAAAATGCCCTGGTACGGTCGACAGTGAGAAGAGTTCGCTCTCCCTCTC]

[-] EMBL CD064680             [TTGAAAACGAACATGAAATGAATTGTCACACTTCATTGATTTTCGTTACATTTCGAAGTTCGGANAATTTTACAAAGACGAAATATCAGGATTATTATGAAAATCATATTACGCGGAAATCAGTGATTAATTTGCAGAGCAGCAACAAAAAGGTCATTAGTAAAATAATGTGATGAAAGTAAAATAAATTACAGCCAAATATCATTACATGTTGCACAAGTTTAGTATAAAAGTAGGCAAATCGATTTACACAGTTTTGGAATGTTATGAAATAAAAAGTTGATAAAGAAAGCACAACTTAACAATATAAGCATGGGGTATAAAATAAAGTTAGTAGATCACAGAGATAAAGTTGAGTTGTTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCCTGAAATTCAAAGATGTTGAGATTATTTACATGATATGATAACAGCTGACTGCTTAAATTAACTTAAAAGTTCAGCAAAGATTATTAGTTTATCCGGAAAGCTGCATTAATCATAGCACTGGACAGTAAAATCGCTTAGACAAAATGTAGTTATACAAGCCCCAAAATGCCCTGGTACGGTCGACAGTGAGAAGAGTTCGCTCTCCCTCTC]




>consensus_9044#1
TTGAAAACGAACATGAAATGAATTGTCACACTTCATTGATTTTCGTTACATTTCGAAGTT
CGGANAATTTTACAAAGACGAAATATCAGGATTATTATGAAAATCATATTACGCGGAAAT
CAGTGATTAATTTGCAGAGCAGCAACAAAAAGGTCATTAGTAAAATAATGTGATGAAAGT
AAAATAAATTACAGCCAAATATCATTACATGTTGCACAAGTTTAGTATAAAAGTAGGCAA
ATCGATTTACACAGTTTTGGAATGTTATGAAATAAAAAGTTGATAAAGAAAGCACAACTT
AACAATATAAGCATGGGGTATAAAATAAAGTTAGTAGATCACAGAGATAAAGTTGAGTTG
TTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCCTGAAATTCAAAGATGTTG
AGATTATTTACATGATATGATAACAGCTGACTGCTTAAATTAACTTAAAAGTTCAGCAAA
GATTATTAGTTTATCCGGAAAGCTGCATTAATCATAGCACTGGACAGTAAAATCGCTTAG
ACAAAATGTAGTTATACAAGCCCCAAAATGCCCTGGTACGGTCGACAGTGAGAAGAGTTC
GCTCTCCCTCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9044#0      ---------------------------------CATTGATTTTCGTTACATTTCGAAGTT 27
consensus_9044#1      TTGAAAACGAACATGAAATGAATTGTCACACTTCATTGATTTTCGTTACATTTCGAAGTT 60
                                                       ***************************

consensus_9044#0      CGGAAAATTTTACAAAGACGAAATATCAGGATTATTATGAAAATCATATTACGCGGAAAT 87
consensus_9044#1      CGGANAATTTTACAAAGACGAAATATCAGGATTATTATGAAAATCATATTACGCGGAAAT 120
                      **** *******************************************************

consensus_9044#0      CAGTGATTAATTTGCAGAGCAGCAACAAAAAGGTCATTAGTAAAATAATGTGATGAAAGT 147
consensus_9044#1      CAGTGATTAATTTGCAGAGCAGCAACAAAAAGGTCATTAGTAAAATAATGTGATGAAAGT 180
                      ************************************************************

consensus_9044#0      AAAATAAATTACAGCCAAATATCATTACATGTTGCACAAGTTTAGTATAAAAGTAGGCAA 207
consensus_9044#1      AAAATAAATTACAGCCAAATATCATTACATGTTGCACAAGTTTAGTATAAAAGTAGGCAA 240
                      ************************************************************

consensus_9044#0      ATCGATTTACACAGTTTTGGAATGTTATGAAATAAAAAGTTGATAAAGAAAGCACAACTT 267
consensus_9044#1      ATCGATTTACACAGTTTTGGAATGTTATGAAATAAAAAGTTGATAAAGAAAGCACAACTT 300
                      ************************************************************

consensus_9044#0      AACAATATAAGCATGGGGTATAAAATAAAGTTAGTAGATCACAGAGATAAAGTTGAGTTG 327
consensus_9044#1      AACAATATAAGCATGGGGTATAAAATAAAGTTAGTAGATCACAGAGATAAAGTTGAGTTG 360
                      ************************************************************

consensus_9044#0      TTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCATGCAAG--AATTGAATTA 385
consensus_9044#1      TTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCCTGAAATTCAAAGATGTTG 420
                      ***************************************** ** **   **     ** 

consensus_9044#0      AGAAA---TGCAAAATGTATGTGTAGAT-ACTGGGAATATTAATCTTA---TTTCGCT-- 436
consensus_9044#1      AGATTATTTACATGATATGATAACAGCTGACTGCTTAAATTAACTTAAAAGTTCAGCAAA 480
                      ***     * **  ** *      ** * ****   * *****  * *   **  **   

consensus_9044#0      GTCTAGTGACCGAATAGGCGCACCATTTTGTACGTGGTAAT---CAATGAGATGTTGTAT 493
consensus_9044#1      GATTATTAGTTTATCCGGAAAGCTGCATTAATCATAGCACTGGACAGTAAAATCGCTTAG 540
                      *  ** *     *   **    *    **   * * * * *   ** * * **    ** 

consensus_9044#0      ACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATG 553
consensus_9044#1      ACAAA-ATGTAGTTATACAAGC-CCCAAAATGCCCTGGTACGGTCGAC-AGTGAGAAGAG 597
                      ** *  *  ** *  * *       *  *     * * ** * *** * *** * **  *

consensus_9044#0      TCTATATTTTCCGTCTTGAAGGCCGCTTAATACAAACTGACCGGGCTGCTGAATGCTAGC 613
consensus_9044#1      TTCGCTCTCCCTCTC--------------------------------------------- 612
                      *      *  *  **                                             

consensus_9044#0      ACGTACAAGAAAGTCCCCATCATAACGCAACAAATTTTCGGCTTGTGATCTGGACATTTT 673
consensus_9044#1      ------------------------------------------------------------
                                                                                  

consensus_9044#0      ACCAACATACCAAGGTTCACCGACTGGTTCTAAATGTTCAAAATTTGGAAGTCCAACCGG 733
consensus_9044#1      ------------------------------------------------------------
                                                                                  

consensus_9044#0      TGCTTTTATATTAGAGATTGATTTGACACCGGCGACTTTGTTAATTTTGCGGGAAGGTTG 793
consensus_9044#1      ------------------------------------------------------------