These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 599 fasta sequence [ATGTGTAGATTGTATTAGCTTAACTCTATATCCAAGTAAGACAAAAAAAATTGTATTTTGTTCTATCTTTTATTCACATGTATCCTTTTGGTGACCATTTACATTTTATTATTATTATTATTTGCATTAAAAAAATGGCTTTAACTTCCGATCAATTTCAGTTGCTAATCCAGCGACAAGAGCAGCGCTTTAGAAAGAGTCAATTGGATTTCATTGACAAGTTACACGCGAAGCTGCTGAATCACCCATGCTTTGGGGGTGCAACGGAAGTTGACGCATTGATTTCTAAATTGCGTACAGAACTGGAAGTCGATTGCAGAACAAATGAATATGCAGAGGAAAGCCTCAATGAATCCGCGAAAAACAGTAATTTAAAGGCAGCAGTAGCAGTCCTACATGATCAGCCCAGTAGTCCGGTACTGTCTGTTTCAGAGACATGCCCTATACACGGTCCAAGTCCTATTAACCCCGAAAACGGACGTACAAACAGTGAATTATCCTGTTCACAGAAAGTAAATGTCTTGCTAAATGCTTATGAAAGTGCTGCAGTACCCGCGCATGAAGAAATGGGAAACAAATCGAGCAGTATAGTGGATACA] [+] EMBL CD092895 [ATGTGTAGATTGTATTAGCTTAACTCTATATCCAAGTAAGACAAAAAAAATTGTATTTTGTTCTATCTTTTATTCACATGTATCCTTTTGGTGACCATTTACATTTTATTATTATTATTATTTGCATTAAAAAAATGGCTTTAACTTCCGATCAATTTCAGTTGCTAATCCAGCGACAAGAGCAGCGCTTTAGAAAGAGTCAATTGGATTTCATTGACAAGTTACACGCGAAGCTGCTGAATCACCCATGCTTCGGGGGTGCAACGGAAGTTGACGCATTAATTTCAAAATT ] [+] EMBL CD170451 [ ACACGCGAAGCTGCTGAATCACCCATGCTTTGGGGGTGCAACGGAAGTTGACGCATTGATTTCTAAATTGCGTACAGAACTGGAAGTCGATTGCAGAACAAATGAATATGCAGAGGAAAGCCTCAATGAATCCGCGAAAAACAGTAATTTAAAGGCAGCAGTAGCAGTCCTACATGATCAGCCCAGTAGTCCGGTACTGTCTGTTTCAGAGACATGCCCTATACACGGTCCAAGTCCTATTAACCCCGAAAACGGACGTACAAACAGTGAATTATCCTGTTCACAGAAAGTAAATGTCTTGCTAAATGCTTATGAAAGTGCTGCAGTACCCGCGCATGAAGAAATGGGAAACAAATCGAGCAGTATAGTGGATACA] [+] EMBL CD120855 [ ACACGCGAAGCTGCTGAATCACCCATGCTTTGGGGGTGCAACGGAAGTTGACGCATTGATTTCTAAATTGCGTACAGAACTGGAAGTCGATTGCAGAACAAATGAATATGCAGAGGAAAGCCTCAATGAATCCGCGAAAAACAGTAATTTAAAGGCAGCAGTAGCAGTCCTACATGATCAGCCCAGTAGTCCGGTACTGTCTGTTTCAGAGACATGCCCTATACACGGTCCAAGTCCTATTAACCCCGAAAACGGACGTACAAACAGTGAATTATCCTGTTCACAGAAAGTAAATGTCTTGCTAAATGCTTATGAAAGTGCTGCAGTACCCGCGCATGAAGAAATGGGAAACAAATCGAGCAGTATAGTGGATACA] [+] EMBL CD120854 [ ACACGCGAAGCTGCTGAATCACCCATGCTTTGGGGGTGCAACGGAAGTTGACGCATTGATTTCTAAATTGCGTACAGAACTGGAAGTCGATTGCAGAACAAATGAATATGCAGAGGAAAGCCTCAATGAATCCGCGAAAAACAGTAATTTAAAGGCAGCAGTAGCAGTCCTACATGATCAGCCCAGTAGTCCGGTACTGTCTGTTTCAGAGACATGCCCTATACACGGTCCAAGTCCTATTAACCCCGAAAACGGACGTACAAACAGTGAATTATCCTGTTCACAGAAAGTAAATGTCTTGCTAAATGCTTATGAAAGTGCTGCAGTACCCGCGCATGAAGAAATGGGAAACAAATCGAGCAGTATAGTGGATACA] consensusID : consensus_9045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 588 fasta sequence [TATAAATATACATNCAAATNCNAATATATACTCTCTCACATCAAACCTACCTAATCATGTACAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACTACTACTT---CTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTTCTACTACAAGCCACATTCCAGTCATTTACTCAACTTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCTAAACAAAAAACTAATGCACATACCTGTCTGCACATTCGAAAATTATACAAATTACCACACACCTATCGCCTTATTATCATCAATAATATTTCTGTCAGTGGTACTTTTATCATTATCATTGCTACTATCGCTATTATCATTTTGGCTATTATTATTATTATTATTTATTATTCACTTACTTTTATACCCCATTTTTTTGTTAAAATCCAACTTCATTTCGTGTGACATTCTATTCCTTATGGTTGTATTTATTATTTTAAAAATGCCTCCCCTTTGTGTTGAGAGCACTTTTCAAATTACAAAAGTATTGGAAATTCTTTGCTTACCATCTTTGCATAGTCTTCTTTA] [-] EMBL CD120134 [TATAAATATACATNCAAATNCNAATATATACTCTCTCACATCAAACCTACCTAATCATGTACAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACTACTACTT CTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTTCTACTACAAGCCACATTCCAGTCATTTACTCAACTTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCTAAACAAAAAACTAATGCACATACCTGTCTGCACATTCGAAAATTATACAAATTACCACACACCTATCGCCTTATTATCATCAATAATATTTCTGTCAGTGGTACTTTTATC ] [+] EMBL CD124661 [ ACCTAATCATGTACAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACCACTACTTCTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTTCTACTACAAGCCACATTCCAGTCATTTACTCAACTTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCTAAACAAAAAACTAATGCACATACCTGTCTGCACATTCGAAGATTATACAAATTACCACACACCTATCGCCTTATTATCATCAATAATATTTCTGTCAGTGGTACTTTTATCATTATCATTGCTACTATCGCTATTATCATTTTGGCTATTATTATTATTATTATTTATTATTCACTTACTTTTATACCCCATTTTTTTGTTAAAATCCAACTTCATTTCGTGTGACATTCTATTCCTTATGGTTGTATTTATTATTTTAAAAATGCCTCCCCTTTGTGTTGAGAGCACTTTTCAAATTACAAAAGTATTGGAAATTCTTTGCTTACCATCTTTGCATAGTCTTCTTTA] [-] EMBL CD085342 [ CAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACTACTACTT CTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTTCTACTACAAGCCACATTCCAGTCATTTACTCAACTTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCTAAACAAAAAACTAATGCACATACCTGTCTGCACATTCGAAAATTATACAAATTACCACACACCTATCGCCTTATTATCATCAAT ] consensusID : consensus_9045#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [AAAGGAACTGAAAGGAAAGAGGGGAAAAGGAAAGTACAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCACAAACTATACCACAACATGGCGAAGACGACCGGAGAAGATGAAGAAAACGAACATGTGATATTGGTAAACATAGGTGAATAAAATACAATTGCACACAACGTGAAAAGTGATCTATATATTACACTAATATGATCTGTTTACACGAGTGAACTGGTGATAATAATAATAATAATAATAGTGGTATCATCATCACCCTATTTACACATCACTTCTAATAACCACTATTATTTTTTTATACTCCAGTGGAAGTTGTATTAGAAAAAAAGCGTC] [+] EMBL AI447059 [AAAGGAACTGAAAGGAAAGAGGGGAAAAGGAAAGTACAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCACAAACTATACCACAACATGGCGAAGACGACCGGAGAAGATGAAGAAAACGAACATGTGATATTGGTAAACATAGGTGAATAAAATACAATTGCACACAACGTGAAAAGTGATCTATATATTACACTAATATGATCTGTTTACACGAGTGAACTGGTGATAATAATAATAATAATAATAGTGGTATCATCATCACCCTATTTACACATCACTTCTAATAACCACTATTATTTTTTTATACTCCAGTGGAAGTTGTATTAGAAAAAAAGCGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9045#0 -ATGTGTAGATTGTATTAGCTTAACTCTATATCCAAGTAAGACAAAAAAAATTGTATTTT 59 consensus_9045#2 ------------------------------------------------------------ consensus_9045#1 TATAAATATACATNCAAATNCNAATATATACTCTCTCACATCAAACCTACCTAATCATGT 60 consensus_9045#0 GTTCTATCTTTTATTCACATGTATCCTTTTGGTGACCATTTACATTTTATTATTATTATT 119 consensus_9045#2 ------------------------------------------------------------ consensus_9045#1 ACAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACTACTACTTCTACTACTACT 120 consensus_9045#0 ATTTGCATTAAAAAAATGGCTTTAACTTCCGATCAATTTCAGTTGCTAATCCAGCGACAA 179 consensus_9045#2 ------------------------------------------------------------ consensus_9045#1 ACTACTACTACTACTACTACTACTACTACTACTACTACTTCTACTACAAGCCACATTCCA 180 consensus_9045#0 GAGCAGCGCTTTAGAAAGAGTCAATTGGATTTCATTGACAAGTTACACGCGAAGCTGCTG 239 consensus_9045#2 ---------------------------AAAGGAACTGAAAGGAAAGAGGGGAAAAGG--A 31 consensus_9045#1 GTCATTTACTCAACTTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCT 240 * * * * * * * consensus_9045#0 AATCACCCATGCTTTGGGGGTGCA-ACGGAAGTTGACGCAT-TGATTTCTAAATTGCGTA 297 consensus_9045#2 AAGTACAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCA 91 consensus_9045#1 AAACAAAAAACTAATGCACATACCTGTCTGCACATTCGAAAATTATAC---AAATTACCA 297 ** * * ** * * * * * * consensus_9045#0 CAGAACTGGAAGTCGATTG-CAGAACAAATGAATATGCAGAGGAAAGCCTCAATGAATCC 356 consensus_9045#2 CA-AACTATA---CCACAA-CATGGCGAAGACGACCGGAGAAGATGAAGAAAACGAACAT 146 consensus_9045#1 CACACCTATCGCCTTATTATCATCAATAATATTTCTGTCAGTGGTACTTTTATCATTATC 357 ** * ** * ** ** * * * consensus_9045#0 GCGAAAAACAGTAATTTAAAGGCAGCAGTAGCAGTCCTACATGATCAGCCC-AGTAGTCC 415 consensus_9045#2 GTGATATTGGTAAACATAGGTGAATAAAATACAATTGCACACAACGTGAAA-AGTGATC- 204 consensus_9045#1 ATTGCTACTATCGCTATTATCATTTTGGCTATTATTATTATTATTATTTATTATTCACTT 417 * * * * consensus_9045#0 GGTACTGTCT---GTTTCAGAGACATGCCCTATACACGGTCCAAGTCCTA--TTAACCCC 470 consensus_9045#2 -----TATAT---ATTACACTAATATGATCTGTTTACA---CGAGTGA-A--CTGGTGAT 250 consensus_9045#1 ACTTTTATACCCCATTTTTTTGTTAAAATCCAACTTCATTTCGTGTGACATTCTATTCCT 477 * * ** * * * * ** * * consensus_9045#0 GAAAACGGACGTACAAACAGTGAATTATCCTGTTCACAGAAAGTAAATGTCTTGCTAAAT 530 consensus_9045#2 AATAATAATAATAATAATAGTGG--TATCATCATCACCCTATTTACACATCACTTCTAAT 308 consensus_9045#1 TATGGTTGTATTTATTATTTTAA--AAATGCCTCCCCTTTGTGTTGAGAGCACTTTTCA- 534 * * * * * * * * * * * consensus_9045#0 GCTTATGAAAGTGCTGCAGTACCCGCGCATGAAGAAATGGGAAACAAATCGAGCAGTATA 590 consensus_9045#2 AACCACTATTATTTTTTTATACTCCAGTG-GAAGTTGTATTAGAAAAAAAGCGTC----- 362 consensus_9045#1 AATTACAAAAGTATTG--GAAATTCTTTGCTTACCATCTTTGCATAGTCTTCTTTA---- 588 * * * * * * * * consensus_9045#0 GTGGATACA 599 consensus_9045#2 --------- consensus_9045#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||