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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9049#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 977 fasta sequence
[TGCATCCTTTTCTTTGTGATTTTACCTATTATTGGATTTGGAGTATATTATGTATTTATACGTTCTGGTAGATGTTTATTGAGTACATCAAAGGAGTTTATTTATACAAGTAGTGGTTTACGTAAACCATTTGATAAAAATTGTACAGAATGCTTTTGCCAACTATTCAGTTTCCTAGCATCTTTCACAGAACTATTCACAAGATCTATTCGTACAACAGTAATCGATGGTAGTAATACAGTCACTGTATCAAACATGACGAAGTCAAAAATTCAAAACAAAGTGACAGACTCGAAAAACCGTACCCCTTACTTGCATTCGCAGCCGCCGATCCAAAAGTCTCAGAGAATAAGGAATTCATCAACGGTCAAACCAATGGTTACTGTAATATCACATCCAACGGTAAACTATCAAACGGTTCTTACAGACCAGTTAAACCAAAAACAGTCAGCTTTGAACCAGTGCCCTCGAAGAGAACAACTTCCAACTTCAGTGGAGTCAAAACAACTTGCTCACAAAACACCTTGTTCACTAGTTCATCAACAGAAAATAGCACGAAGTCAGAAAACAAATATCAGCGAACAGATAAAAACGGCATCATCAAAGAAGATAGTAAAGTAACGATCCCAACTAGTCACCTGAAGTATGATGAACGTCTCTCCACTGCTTTTGAACATCACCAACAACATTTACAATCGAACAGTACATCCATAAAACCAACTACATTCATTTCAGAACCACGTCTTGAAACAATGACTTATGAAGGACCGATGTGTTCTTTA-AATGATCCAGTTATGATTAACACATTACAACGTAAATCTAAAAACACACTTGATAATCAATCAAAATCTGCTATACTTAATAATTCTCAGTCATCTATTAATAAACANAGTTGTCAACAAAAAACAATCACTAATCAACACNNATACACACAACTACTAACAAACACAGTTGTAACAGGTGGACGTAAACCACTT]
[-] EMBL CD148686 [TGCATCCTTTTCTTTGTGATTTTACCTATTATTGGATTTGGAGTATATTATGTATTTATACGTTCTGGTAGATGTTTATTGAGTACATCAAAGGAGTTTATTTATACAAGTAGTGGTTTACGTAAACCATTTGATAAAAATTGTACAGAATGCTTTTGCCAACTATTCAGTTTCCTAGCATCTTTCACAGAACTATTCACAAGATCTATTCGTACAACAGTAATCGATGGTAGTAATACAGTCACTGTATCAAACATGACGAAGTCAAAAATTCAAAACAAAGTGACAGACTCGAAAAACCGTACCCCTTACTTGCATTCGCAGCCGCCGATCCAAAAGTCTCAGAGAATAAGGAATTCATCAACGGTCAAACCAATGGTTACTGTAATATCACATCCAACGGTAAACTATCAAACGGTTCTTACAGACCAGTTAAACCAAAAACAGTCAGCTTTG ]
[+] EMBL CD188341 [ TACGTAAACCATTTGATAAAAATTGTACAGAATGCTTTTGCCAACTATTCAGTTTCCTAGCATCTTTCACAGAACTATTCACAAGATCTATTCGTACAACAGTAATCGATGGTAGTAATACAGTCACTGTATCAAACATGACGAAGTCAAAAATTCAAAACAAAGTGACAGACTCGAAAAACCGTACCCCTTACTTGCATTCGCAGCCGCCGATCCAAAAGTCTCAGAGAATAAGGAATTCATCAACGGTCAAACCAATGGTTACTGTAATATCACATCCAACGGTAAACTATCAAACGGTTCTTACAGACCAGTTAAACCAAAAACAGTCAGCTTTGAA ]
[-] EMBL CD065333 [ TTGTACAGAATGCTTTTGCCAACTATTCAGTTTCCTAGCATCTTTCACAGAACTATTCACAAGATCTATTCGTACAACAGTAATCGATGGTAGTAATACAGTCACTGTATCAAACAGGACGAAGTCAAAAATTCAAAACAAAGTGACAGACTCGATTAACCGTACCCCTTACTTGCATTCGCACCCGCCGATCCAAAAGTCTCAGAGAATAAGGAATTCATCAACGGTCAAACCAATGGTTACTGTAATATCACATCCAACGGTAAACTATCAAACGGTTCTTACAGACCAGTTAAACCTATACTAGTCAGCTTTGAA ]
[+] EMBL CD152970 [ AAGTCTCAGAGAATAAGGAATTCATCAACGGTCAAACCAATGGTTACTGTAATATCACATCCAACGGTAAACTATCAAACGGTTCTTACAGACCAGTTAAACCAAAAACAGTCAGCTTTGAACCAGTGCCCTCGAAGAGAACAACTTCCAACTTCAGTGGAGTCAAAACAACTTGCTCACAAAACACCTTGTTCACTAGTTCATCAACAGAAAATAGCACGAAGTCAGAAAACAAATATCAGCGAACAGATAAAAACGGCATCATCAAAGAAGATAGTAAAGTAACGATCCCAACTAGTCACCTGAAGTATGATGAACGTCTCTCCACTGCTTTTGAACATCACCAACAACATTTACAATCGAACAGTACATCCATAAAACCAACTACATTCATTTCAGAACCACGTCTTGAAACAATGACTTATGAAGGACCGATGTGTTCTTTA AATGATCCAGTTATGATTAACACATTACAACGTAAATCTAAAAACACACTTGATAATCAATCAAAATCTGCTATACTTAATAATTCTCAGTCATCTATTAATAAACANAGTTGTCAACAAAAAA ]
[+] EMBL CD068544 [ GAT AAAACGGCATCATCACAGAAGATAGTACAGTACCGATCCCAACTAGTCACCTGAAGTATGATGAACGTCTCTCCACTGCTTTCGAACATCACCAACAACATTTACAATCGAACAGTACATCCATAAAACCAACTACATTCATTACAGAACCACGTCTTGAAACAATGCCTTATGAAGGACCGATGTGTTCTTTACAATGATCCAGTTATGATCAACACATTACAACGTAAATCTAAACACACACTTGATAATCAATCACAATCTGCTATACTTA ]
[+] EMBL CD141471 [ AGATAGTAAAGTAACGATCCCAACTAGTCACCTGAAGTATGATGAACGCCTCTCCACTGCTTTTGAACATCACCAACAACATTTACAATCGAACAGTACATCCATAAAACCAACTACATTCATTTCAGAACCACGTCTTGAAACAATGACTTATGAAGGACCGATGTGTTCTTTA AATGATCCAGTTATGATTAACACATTACAACGTAAATCTAAAAACACACTTGATAATCAATCAAAATCTGCTATACTTAATAATTCTCAGTCATCTATTAATAAACAAAGTTGTCAACAAAAAACAATCACTAATCAACACNNATACACACAACTACTAACAAACACAGTTGTAACAGGTGGACGTAAACCACTT]
[+] EMBL CD179750 [ AAAGTAACGATCCCAACTAGTCACCTGAAGTATGATGAACGTCTCTCCACTGCTTTTGAACATCACCAACAACATTTACAATCGAACAGTACATCCATAAAACCAACTACATTCATTTCAGAACCACGTCTTGAAACAATGACTTATGAAGGACCGATGTGTTCTTTA AATGATCCAGTTATGATTAACACATTACAACGTAAATCTAAAAACACACTTGATAATCAATCAAAATCTGCTATA ]
consensusID : consensus_9049#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[TCCTAAGTTGATTACAATTTACTGAATAACTCTATCGGAAAATTGTGTAGATACAAAAATTTTGTCTAGCAGAAAAATCGTTATGAAAGAGTAATTTTTCAAAGTGGATTTCTAAAAAGGAATGAGAAGGAATTTTATACATATATAATCAATTATCAATGAATGAATGGAGAAAATAAATTCATTGGTGAATTATTTCAGCATGCAAATCATGAATGATGAACAGAAAGAAAAATGTTTATAGAATAAGTTATTCTTGTATATTCACTAAAATACAAACATTGTTTATCTGAATAAATGAGAATTAACCCTACTAAACAATTATTTGTTATGATGATTACTTGATACAGTGACTGTATTACTACCATCGATTACTGTTGTACGAATAGATCTTGTGAATAGTTCTGTGAAAGATGCTAGGAAACTGGAAAATATTTTTTTTTCAAATATACAAAAAGGAATACTAAAGTAGTTATTTAAAGCAACAACAGTAGAATATAATATTCAAGTATGCATGAATAAAGTTTATGCACTAAAGTGAATTCACTGACGCTTGGAATGTGTTATAACTCAGAATTGCATGGTA]
[+] EMBL CD153979 [TCCTAAGTTGATTACAATTTACTGAATAACTCTATCGGAAAATTGTGTAGATACAAAAATTTTGTCTAGCAGAAAAATCGTTATGAAAGAGTAATTTTTCAAAGTGGATTTCTAAAAAGGAATGAGAAGGAATTTTATACATATATAATCAATTATCAATGAATGAATGGAGAAAATAAATTCATTGGTGAATTATTTCAGCATGCAAATCATGAATGATGAACAGAAAGAAAAATGTTTATAGAATAAGTTATTCTTGTATATTCACTAAAATACAAACATTGTTTATCTGAATAAATGAGAATTAACCCTACTAAACAATTATTTGTTATGATGATTACTTGATACAGTGACTGTATTACTACCATCGATTACTGTTGTACGAATAGATCTTGTGAATAGTTCTGTGAAAGATGCTAGGAAACTGGAAAATATTTTTTTTTCAAATATACAAAAAGGAATACTAAAGTAGTTATTTAAAGCAACAACAGTAGAATATAATATTCAAGTATGCATGAATAAAGTTTATGCACTAAAGTGAATTCACTGACGCTTGGAATGTGTTATAACTCAGAATTGCATGGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9049#0 TGCATCCTTTTCTTTGTGATTTTACCTATTATTGGATTTGGAGTATATTATGTATTTATA 60
consensus_9049#1 ------------------------------------------------------------
consensus_9049#0 CGTTCTGGTAGATGTTTATTGAGTACATCAAAGGAGTTTATTTATACAAGTAGTGGTTTA 120
consensus_9049#1 ------------------------------------------------------------
consensus_9049#0 CGTAAACCATTTGATAAAAATTGTACAGAATGCTTTTGCCAACTATTCAGTTTCCTAGCA 180
consensus_9049#1 ------------------------------------------------------------
consensus_9049#0 TCTTTCACAGAACTATTCACAAGATCTATTCGTACAACAGTAATCGATGGTAGTAATACA 240
consensus_9049#1 ------------------------------------------------------------
consensus_9049#0 GTCACTGTATCAAACATGACGAAGTCAAAAATTCAAAACAAAGTGACAGACTCGAAAAAC 300
consensus_9049#1 --------------------------------------------------TCCTAAGTTG 10
* **
consensus_9049#0 CGTACCCCTTACTTGCATTCGCAGCCGCCGATCCAAAAGTCTCAGAGAATAAGGAATTCA 360
consensus_9049#1 ATTACAATTTACTGA-----ATAAC--TCTATCGGAAAATTGTGTAGATACAAAAATT-- 61
*** ***** * * * *** *** * *** * ****
consensus_9049#0 TCAACGGTCAAACCAATGGTTACTGTAATATCACATCCAACGGTAAACTATCAAACGGTT 420
consensus_9049#1 TTGTCTAGCAGAAAAATCGTTATGAAAGAGTAATTTTTCAAAGTGGATTTCTAAAAAGGA 121
* * ** * *** **** * * * * * ** * * *** *
consensus_9049#0 CTTACAGACCAGTTAAACCAAAAACAGTCAGCTTTGAACCAGTGCCCTCGAAGAGAACAA 480
consensus_9049#1 ATGAGAAGGAATTTTATACATATATAATCAATTATCAATGAATGAA--TGGAGAAAATAA 179
* * * * ** * ** * * * *** * * ** * ** * *** ** **
consensus_9049#0 CTTCCAACTTCAGTGGAGTCAAAACAACTTGCTCACAAAACACCTTGTTCACTAGTTCAT 540
consensus_9049#1 ATTC----ATTGGTGAA-TTATTTCAGCATGCAAATCATGAA---TGATGAACAGAAAGA 231
*** * *** * * * ** * *** * * * ** * * **
consensus_9049#0 CAACAGAAAATAGCACGAAGTCAGAAAACAAATATCAGCGAACAGATAAAAACGGCATCA 600
consensus_9049#1 AAAATGTTTATAGAAT-AAGTTATTCT-TGTATATTCACTAAAATACAAACATTGT-TTA 288
** * **** * **** * **** * ** * * *** * * * *
consensus_9049#0 TCAAAGAAGATAGTAAAGTAACGATCCCAACTAGTCACCTGAAGTATGATGAACGTCTCT 660
consensus_9049#1 TCTGAATAAATGA-GAATTAACCCTACTAAACAATTATTTG--TTATGATGATTA-CTTG 344
** * * ** ** **** * * ** * * * ** ******** **
consensus_9049#0 CCACTGCTTTTGAACATCACCAACAACATTTACAATCGAAC-AGTACATCCATAAAACCA 719
consensus_9049#1 ATACAGTGACTG--TATTACTACCATCGATTACTGTTGTACGAATAGATCT-TGTGAATA 401
** * ** ** ** * ** * **** * * ** * ** *** * * *
consensus_9049#0 ACTACATTCATTTCAGAACCACGTCTTGAAACAATGACTTATGAAGGA--CCGATGTGTT 777
consensus_9049#1 GTTCTGTGAAAGATGCTAGGAAACTGGAAAATATTTTTTTTTCAAATATACAAAAAGGAA 461
* * * * * *** * * ** * ** * * * *
consensus_9049#0 CTTTAAATGATCCAGTTATGATTAACACATTACAACGTAA-ATCTAAAAACACACTTGAT 836
consensus_9049#1 TACTAAAGTAGTTATTTAAAGCAACAACAGTAGAATATAATATTCAAGTATGCATGAATA 521
**** * * *** * *** ** ** *** ** ** * **
consensus_9049#0 AATCAATCAAAATCTGCTATACTTAATAATTCTCAGTCATCTATTAATAAACANAGTTGT 896
consensus_9049#1 AAGTTTATGCACTAAAGTGAATTCACTGACGCTTGGA-ATGTGTTATAACTCAGAATTGC 580
** * * * * * * * * ** * ** * *** * ** * ***
consensus_9049#0 CAACAAAAAACAATCACTAATCAACACNNATACACACAACTACTAACAAACACAGTTGTA 956
consensus_9049#1 ATGGTA------------------------------------------------------ 586
*
consensus_9049#0 ACAGGTGGACGTAAACCACTT 977
consensus_9049#1 ---------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||