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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9054#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 882 fasta sequence
[TCCAAGTGAAGCAAGAATTGATTGTACAGATAATGGAGATGGATCAGCCACTGTAGCTTATTGGCCAACAGCTCCTGGTGAATATGCAGTTCACATTTTATGTAATGATGAAAATATACCAAAATCTCCTTTCATGGTTCCAATTGAACCAGATATGGGTAAATGTGATCCTGAAAGAGTTAAAGCACATGGACCAGGTATAATGCCAACTGGGAACGTTGCTGGTCAACCAACTGAATTTACAGTAGATATTAGAGATTCTGGTGGTCCTGCCCCATTAACAGTTGAATGCAGAGACAATGAAGGTGAACCAGTTGCACTGAAAGTTCGTGATAATGGCGATGGTACTTATACATGTAGCTATACACCTAAAGTTCCCAAAAAAACACACAGTTCTTGTTTCCTACGGTGGAGTCAATATACCTAGAAGTCCTTTCAGAGTTGAAGTAGCTGAACCTAGTAATCCAGGAAAAGTACGCGTTTTTGGTCCAGGTGTAGAAAATGTTACTAGAGGTCAACCAACCTATTTCACAGTAGATTGTAAACAGGCTGGACATGGTAATGTTGGGATCAGTGTCACCGATGAAGCTGGACGTGATGTTGCTATGGATACACAAGATATGAGAGATGGAACATTTAAAGTTGCTTATACAGCTAATACACCAGGACCTTATTATACTGTACAAGTATTTTTCAATAATCAAGAAGTTCCACGTAGTCCATTTAAAGTACCTGTTAAACCAAATATCGATATGTCGAAAATTCATGTTGAAAATCTTGAACCAAATATCACTACTGGTGTACCAACGGAGTTTGATGTAATAACTGCGGGTGCAGGCCCACCAAATAATAGCTAACCGAAACCAACTGTAACAGTAAAAT]
[-] EMBL CD065626 [TCCAAGTGAAGCAAGAATTGATTGTACAGATAATGGAGATGGATCAGCCACTGTAGCTTATTGGCCAACAGCTCCTGGTGAATATGCAGTTCACATTTTATGTAATGATGAAAATATACCAAAATCTCCTTTCATGGTTCCAATTGAACCAGATATGGGTAAATGTGATCCTGAAAGAGTTAAAGCACATGGACCAGGTATAATGCCAACTGGGAACGTTGCTGGTCAACCAACTGAATTTACAGTAGATATTAGAGATTCTGGTGGTCCTGCCCCATTAACAGTTGAATGCAGAGACAATGAAGGTGAACCAGTTGCACTGAAAGTTCGTGATAATGGCGATGGTACTTATACATGTAGC ]
[-] EMBL CD190176 [ AGTTGAATGCAGAGACAATGAAGGTGAACCAGTTGCACTGAAAGTTCGTGATAATGGCGATGGTACTTATACATGTAGCTATACACCTAAAGTTCCCAAAAAAACACACAGTTCTTGTTTCCTACGGTGGAGTCAATATACCTAGAAGTCCTTTCAGAGTTGAAGTAGCTGAACCTAGTAATCCAGGAAAAGTACGCGTTTTTGGTCCAGGTGTAGAAAATGTTACTAGAGGTCAACCAACCTATTTCACAGTAGATTGTAAACAGGCTGGACATGGTAATGTTGGGATCAGTGTCACCGATGAAGCTGGACGTGATGTTGCTATGGATACACAAGATATGAGAGATGGAACATTTAAAGTTGCTTATACA ]
[+] EMBL CD115490 [ atCACCTAAAGTTCC AAAAAACACACAGTTCTTGTTTCCTACGGTGGAGTCAATATACCTAGAAGTCCTTTCAGAGTTGAAGTAGCTGAGCCTAGTAATCCAGGAAAAGTACGCGTTTTTGGTCCAGGTGTACAAAATGTTACTAGAGGTCAACCAACCTATTTCACAGTAGATTGTAAACAGGCTGGACATGGTAATGTTGTGATCAGTGTCACCGATGAAGCTGGACGTGATGTTGCTATGGATACACAAGATATGAGAGATGGAACATTTAAAGTTGCTTATACAGCTAATACACCAGGACCTTATTATACTGTACAAGTATTTTTCAATAATCAAGAAGTTCCACGTAGTCCATTTAAAGTACCTGTTAAACCAAATATCGATATGTCGAAAATTCATGTTGAAAATCTTGAACCAAATATCACTACTGGTGTACCAACGGAGTTTGATGTAATAACTGCGGGTGCAGGCCCACCAAATAATAGCTAACCGAAACCAACTGTAACAGTAAAAT]
consensusID : consensus_9054#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 537 fasta sequence
[CAAATAATAGTAAACCGAAACCAACTGTAACAGTAAAATCTCCAAACGGTATGCGTGTACCATGCACTTTAGCTGAAAGCGTAGATGGATATACACCTTCCTTTACACCAACTGTTGTTGGGCCTCATACTGTTGCTGTTGAAGTTGGAGGTGTACCAGTCAAAGGTAGTCCATTTCGTACAAACGCTATTCCACCTGCTGCAGTGCAAGAGCCTATCTATCCAAAAGATTTTGGACGTCAGCAGGCTACTTCAGCACCTATTTCTGGACCTGAAGCAGCAGCTTTGGTCCGCGCTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATAGTCAAGATGCTCCACCTGCTCCACTAAGCGTCACAATTGAAGGACCTGCAGAAGCTAAAATAAATTATAATGATAACGGCGATGGAACATGTGGCGTAGATTATTTACCAACTGAACCAGGACCATATATTGTAAATGTTTTATACAAAGATACACACATTAAAGGAAGTCCATTCCCTGTAA]
[+] EMBL CD194482 [CAAATAATAGTAAACCGAAACCAACTGTAACAGTAAAATCTCCAAACGGTATGCGTGTACCATGCACTTTAGCTGAAAGCGTAGATGGATATACACCTTCCTTTACACCAACTGTTGTTGGGCCTCATACTGTTGCTGTTGAAGTTGGAGGTGTACCAGTCAAAGGTAGTCCATTTCGTACAAACGCTATTCCACCTGCTGCAGTGCAAGAGCCTATCTATCCAAAAGATTTTGGACGTCAGCAGGCTACTTCAGCACCTATTTCTGGACCTGAAGCAGCAGCTTTGGTCCGCGCTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATAGTCAAGATGCTCCACCTGCTC ]
[+] EMBL CD194545 [CAAATAATAGTAAACCGAAACCAACTGTAACAGTAAAATCTCCAAACGGTATGCGTGTACCATGCACTTTAGCTGAAAGCGTAGATGGATATACACCTTCCTTTACACAAACTGTTGTTGGGCCTCATACTGTTGCTGTTGAAGTTGGAGGTGTACCAGTCAAAGGTAGTCCATTTCGTACAAACGCTATTCCACCTGCTGCAGTGCAAGAGCCTATCTATCCAAAAGATTTTGGACGCCAGCAGGCTACTTCAGCACCTATTTCTGGACCTGAAGCAGCAGCTTTGGTCCGCGCTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATAGT ]
[-] EMBL CD072196 [ TGTACCAGTCAAAGGTAGTCCATTTCGTACAAACGCTATTCCACCTGCTGCAGTGCAAGAGCCTATCTATCCAAAAGATTTTGGACGTCAGCAGGCTACTTCAGCACCTATTTCTGGACCTGAAGCAGCAGCTTTGGTCCGCGCTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATAGTCAAGATGCTCCACCTGCTCCACTAAGCGTCACAATTGAAGGACCTGCAGAAGCTAAAATAAA ]
[-] EMBL CD194358 [ AGTCAAAGGTAGTCCATTTCGTACAAACGCTATTCCACCTGCTGCAGTGCAAGAGCCTATCTATCCAAAAGATTTTGGACGTCAGCAGGCTACTTCAGCACCTATTTCTGGACCTGAAGCAGCAGCTTTGGTCCGCGCTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATAGTCAAGATGCTCCACCTGCTCCACTAAGCGTCACAATTGAAGGACCTGCAGAAGCTAAAATAAATTATAATGATAACGGCGATGGAACATGTGGCGTAGATTATTTACCAACTGAACCAGGACCATATATTGTAAATGTTTTATACAAAGATACACACATTAAAGGAAGTCCATTCCCTGTAA]
[+] EMBL CD194546 [ AAGGACCTGCAGAAGCTAAAATAAATTATAATGATAACGGCGATGGAACATGTGGCGTAGATTATTTACCAACTGAACCAGGACCATATATTGTAAATGTTNTATACAAAGATACACACATTANAGGAAGTCCATTCCCTtgt ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9054#0 TCCAAGTGAAGCAAGAATTGATTGTACAGATAATGGAGATGGATCAGCCACTGTAGCTTA 60
consensus_9054#1 ------------------------------------------------------------
consensus_9054#0 TTGGCCAACAGCTCCTGGTGAATATGCAGTTCACATTTTATGTAATGATGAAAATATACC 120
consensus_9054#1 ------------------------------------------------------------
consensus_9054#0 AAAATCTCCTTTCATGGTTCCAATTGAACCAGATATGGGTAAATGTGATCCTGAAAGAGT 180
consensus_9054#1 -------CAAATAATAGT--AAACCGAAACCAAC-TGTAACAGTAAAATCTCCAAACGGT 50
* * ** ** ** *** * * ** * * *** *** **
consensus_9054#0 TAAAGCACATGGACCAGGTATAATGCCAACTGGGAACGTTGCTGGTCAACCAACTGAATT 240
consensus_9054#1 ----ATGCGTGTACCATGCACT---TTAGCTGAAAGCGTAGATGGATATACACCTTCCTT 103
* ** **** * * * *** * *** * *** * ** ** **
consensus_9054#0 TACAGTAGATATTAGAGATTCTGGTGGTCCTGCCCCATTAACAGTTGAATGCAGAGACAA 300
consensus_9054#1 TACACCAACTGTTGTTGGGCCTCATACTGTTGCT---------GTTGAA---------GT 145
**** * * ** * ** * * *** ******
consensus_9054#0 TGAAGGTGAACCAGTTGCACTGAAAGTTCGTGATAATGGCGATGGTACTTATACATGTAG 360
consensus_9054#1 TGGAGGTGTACCAGTCAAA--GGTAGTCCATT-TCGTACAAACGCTATTC-CACCTGCTG 201
** ***** ****** * * *** * * * * * * ** * ** ** *
consensus_9054#0 CTATACACCTAAAGTTCCCAAAAAAACACACAGTTCTTGTTTCCTACGGTGGAGTCAATA 420
consensus_9054#1 CAGTGC-----AAGAGCCTATCTATCCAAAAGATTTTGGACGTCAGCAGGCTACTTCA-G 255
* * * *** ** * * ** * ** * * * * * * * *
consensus_9054#0 TACCTAGAAGTCCTTTCAGAGTTGAAGTAGCTGAACCTAGTAATCCAGGAAAAGTACGCG 480
consensus_9054#1 CACCTA------TTTCTGGACCTGAAGCAGC--AGCTTTG-------------GTCCGCG 294
***** ** ** ***** *** * * * * ** ****
consensus_9054#0 TTTTTGGTCCAGGTGTAGAAAATGTTACTAGAGGTCAACCAACCTATTTCACAGTAGATT 540
consensus_9054#1 CTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATA 354
** **** ** * * ** ** ** * * * * ****** * ***
consensus_9054#0 GTAAACAGGCTGGACATGGTAATGTTGGGATCAGTGTCACCGATGAAGCTGGACGTGATG 600
consensus_9054#1 GTCAAGATGCTCCACCTGCTCCACTAAGCGTCA---CAATTGAAGGACCTGCA---GAAG 408
** ** * *** ** ** * * * *** * ** * * *** * ** *
consensus_9054#0 TTGCTATGGATACACAAGATATGAGAGATGGAACATTTAAAGTTGCTTATACAGCTAATA 660
consensus_9054#1 CTAAAATAAATTATAATGATAACGGCGATGGAACATGTGGCGTAGATTATTTACCAACTG 468
* ** ** * **** * ********** * ** * **** * * * *
consensus_9054#0 CACCAGGACCTTATTATACTGTACAAGTATTTTTCAATAATCAAGAAGTTCCACGTAGTC 720
consensus_9054#1 AACCAGGACCATAT---ATTGTAAATGTTTTATACAAAGATACACACATTAAAGGAAGTC 525
********* *** * **** * ** ** * *** ** * * ** * * ****
consensus_9054#0 CATTTAAAGTACCTGTTAAACCAAATATCGATATGTCGAAAATTCATGTTGAAAATCTTG 780
consensus_9054#1 CATTCCCTGTAA------------------------------------------------ 537
**** ***
consensus_9054#0 AACCAAATATCACTACTGGTGTACCAACGGAGTTTGATGTAATAACTGCGGGTGCAGGCC 840
consensus_9054#1 ------------------------------------------------------------
consensus_9054#0 CACCAAATAATAGCTAACCGAAACCAACTGTAACAGTAAAAT 882
consensus_9054#1 ------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||