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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9056#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 704 fasta sequence
[CCTCCGAGGCCAANAATTCGGCACGAGGCGAAGCTATTGGCTGAGTACAGAAGAAGAACCAATGATGTGGAATCCAGTTCCAGCAAATGAAACTCAAAGATATATAAGTAGATGTGCAGTTTGTGAAGCTTCCAGTAAACTTTATGCTTTCCATTCGCAAACTTTGAAGATTCCTAAATGTCCTGATGGTTGGTCCACTCTGTGGCCGGGAAGTAGTTTCTTTATGAATACTGGTTATGGAGCACAAGGTGGAGGACAACAGCTAGCATCTCCAGGTAGTTGTTTACCACAGTTCCGATCTCATATGTTTATTGAATGTACTGCTAAAGGTTTATGTGGATTTTTTGAAGAACATAAAAATTTCTGGTTACGTGTTATGCCTAGTTCTATGGATGAGCATATGTTTGGCATGGTAATGGGCACTGTAATCAAAGTACGTAATAGTCAAGATTCAGTTGGTAAATGCGCTGTATGTATGAGAACACAACCATTGTCAACATTATTTTATTTAAATTAATCATGCTTTTAATTTCTTTTTTTAAGCATTACATATGATAATACTTTCTCTTTCTTCTGTTTATTAAAACANAACANATTATTGTCAGAATTTTTAAATTTAAAATACTTATGTTATTTTATTTTTTGAGAAAAAAAGTTTCCAAAATGTATTTATATCATGTTGGGATAAATTTTGTTTGCTATTT]
[+] EMBL CD082728 [CCTCCGAGGCCAANAATTCGGCACGAGGCGAAGCTATTGGCTGAGTACAGAAGAAGAACCAATGATGTGGAATCCAGTTCCAGCAAATGAAACTCAAAGATATATAAGTAGATGTGCAGTTTGTGAAGCTTCCAGTAAACTTTATGCTTTCCATTCGCAAACTTTGAAGATTCCTAAATGTCCTGATGGTTGGTCCACTCTGTGGCCGGTAAGTAGTTTCTTTATGAATACTGGTTATGGAGCACAAGGTGGAGGACAACAGCTAGCATCTCCAGGTAGTTGTTTACCACAGTTCCGATCTCATATGTTTATTGAATGTACTGCTAAAGGTTTATGTGGATTTTTTGAAGAACATAAAAATTTCTGGTTACGTGTTATGCCTAGTTCTATGGATGAGCATATGTTTGGCATGGTAATGGGCACTGTAATCAAAGTACGTAATAGTCAAGATTCAGTTGGTAAATGCGCTGTATGTATGAGAACACAACCATTGTCAACATTATTTTATTTAAATTAATCATGCTTTTAATTTCTTTTTTTAAGCATTACATATGATAATACTTTCTCTTTCTTCTGTTTATTAAAACANAACANATTATTGTCAGAATTTT ]
[+] EMBL CD187978 [ GAAGAAGAACCAATGATGTGGAATCCAGTTCCAGCAAATGAAACTCAAAGATATATAAGTAGATGTGCAGTTTGTGAAGCTTCCAGTAAACTTTATGCTTTCCATTCGCAAACTTTGAAGATTCCTAAATGTCCTGATGGTTGGTCCACTCTGTGGCCGGGAAGTAGTTTCTTTATGAATACTGGTTATGGAGCACAAGGTGGAGGACAACAGCTAGCATCTCCAGGTAGTTGTTTACCACAGTTCCGATCTCATATGTTTATTGAATGTACTGCTAAAGGTTTATGTGGATTTTTTGAAGAACATAAAAATTTCTGGTTACGTGTTATGCCTAGTTCTATGGATGAGCATATGTTTGGCATGGTAATGGGCACTGTAATCAAAGTACGTAATAGTCAAGATTCAGTTGGTAAGTGCGCTGTATGTATGAGAACACAACCATTGTCAACATTATTTTATTCAAATTA ]
[+] EMBL CD077499 [ cggcacgagGAAGATTCCTAAATGTCCTGATGGTTGGTCCACTCTGTGGCCGGGAAGTAGTTTCTTTATGAATACTGGTTATGGAGCACAAGGTGGAGGACAACAGCTAGCATCTCCAGGTAGTTGTTTACCACAGTTCCGATCTCATATGTTTATTGAATGTACTGCTAAAGGTTTATGTGGATTTTTTGAAGAACATANAAATTTCTGGTTACGTGTTATGCCTAGTTC ]
[-] EMBL CD065699 [ GTTTACCACAGTTCCGATCTCATATGTTTATTGAATGTACTGCTAAAGGTTTATGTGGATTTTTTGAAGAACATAAAAATTTCTGGTTACGTGTTATGCCTAGTTCTATGGATGAGCATATGTTTGGCATGGTAATGGGCACTGTAATCAAAGTACGTAATAGTCAAGATTCAGTTGGT AATGCGCTGTATGTATGAGAACACAACCATTGTCAACATTATTTTATTTAAATTAATCATGCTTTTAATTTCTTTTTTTAAGCATTACATATGATAATACTTTCTCTTTCTTCTGTTTATTAAAACAAAACAAATTATTGTCAGAATTTTTAAATTTAAAATACTTATGTTATTTTATTTTTTGAGAAAAAAAGTTTCCAAAATGTATTTATATCATGTTGGGATAAATTTTGTTTGCTATTT]
consensusID : consensus_9056#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 554 fasta sequence
[ACAGGACACTTATTCACTGTTCATAGTCAGACTGCACGCATCCCGTCATGTCCGTCATCAACTCGTAAATTATGGGATGGTTATTCATTTTTAAGTATGACTGGATCGGATCGAGCTCATGTTAACGATCTAGCTAGTCCTGGTTCATGTCTACAATTATTTAATCCAATACCGTTTATGTTTTGTGAAAAACAAGAAAATTGTTATTATGCTCAACGAAATGATCGAAGCTATTGGCTGAGTACAGAAGAAGAACCAATGATGTGGAATCCAGTTCCAGCAAATGAAACTCAAAGATATATAAGTAGATGTGCAGTTTGTGAAGCTTCCAGTAAACTTTATGCTTTCCATTCGCAAACTTTGAAGATTCCTAAATGTCCTGATGGTTGGTCCACTCTGTGGCCGGGAAGTAGTTTCTTTATGAATACTGGTTATGGAGCACAAGGTGGAGGACAACAGCTAGCATCTCCAGGTAGTTGTTTACCACAGTTCCGATCTCATATGTTTATTGAATGTACTGCTAAAGGTTTATGTGGATTTTTTGAAGAACATAA]
[-] EMBL CD125357 [ACAGGACACTTATTCACTGTTCATAGTCAGACTGCACGCATCCCGTCATGTCCGTCATCAACTCGTAAATTATGGGATGGTTATTCATTTTTAAGTATGACTGGATCGGATCGAGCTCATGTTAACGATCTAGCTAGTCCTGGTTCATGTCTACAATTATTTAATCCAGTACCGTTTATGTTTTGTGAAAAACAAGAAAATTGTTATTATGCTCAACGAAATGATCGAAGCTATTGGCTGAGTACAGAAGAAGAACCAATGATGTGGAATCCAGTTCCAGCAAATGAAACTCAAAGATATATAAGTAGATGTGCAGTTTGTGAAGCTTCCAGTAAACTTTATGCTTTCCATTCGCAAACTTTGAAGATTCCTAAATGTCCTGATGGTTGGTCCACTCTGTGGCCGGGAAGTAGTTTCTTTATGAATACTGGTTATGGAGCACAAGGTGGAGGACAACAGCTAGCATCTCCAGGTAGTTGTTTACCACAGTTCCGATCTCATATGTTTATTGAATGTACTGCTAAAGGTTTATGTGGATTTTTTGAAGAACATAA]
[+] EMBL CD137271 [ CACGCATCCCGTCATGTCCGTCATCAACTCGTAAATTATGGGATGGTTATTCATTTTTAAGTATGACTGGATCGGATCGAGCTCATGTTAACGATCTAGCTAGTCCTGGTTCATGTCTACAATTATTTAATCCAATACCGTTTATGTTTTGTGAAAAACAAGAAAATTGTTATTATGCTCAACGAAATGATCGAAGCTATTGGCTGAGTACAGAAGAAGAACCAATGATGTGGAATCCAGTTCCAGCAAATGAAACTCAAAGATATATAAGTAGATGTGCAGTTTGTGAAGCTTCCAGTAAACTTTATGCTTTCCATTCGCAAACTTTGAAGATTCCTAAATGTCCTGATGGTTGGTCCACTCTGTGGCCGGGAAGTAGTTTCTTTAT ]
[-] EMBL CD137223 [ ACGCATCCCGTCATGTCCGTCATCAACTCGTAAATTATGGGATGGTTATTCATTTTTAAGTATGACTGGATCGGATCGAGCTCATGTTAACGATCTAGCTAGTCCTGGTTCATGTCTACAATTATTTAATCCAATACCGTTTATGTTTTGTGAAAAACAAGAAAATTGTTATTATGCTCAACGAAATGATCGAAGCTATTGGCTGAGTACAGAAGAAGAACCAATGATGTGGAATCCAGTTCCAGCAAATGAAACTCAAAGATATATAAGTAGATGTGCAGTTTGTGAAGCTTCCAGTAAACTTTATGCTTTCCATTCGCAAACTTTGAAGATTCCTAAATGTCCTGATGGTTGGTCCACTCTGTGGCCGGGAAGTAGTTTCCTTATG ]
[-] EMBL CD125240 [ AGCTATTGGCGGAGTACAGAAGAAGAACCAAGGATGGGCAATCCAGTTCCAGCAAATGAAACTCAAAGATATATAAGTAGATGNGCAGTTTGGGAAGCTTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9056#0 ------------------------------------------------------------
consensus_9056#1 ACAGGACACTTATTCACTGTTCATAGTCAGACTGCACGCATCCCGTCATGTCCGTCATCA 60
consensus_9056#0 ------------------------------------------------------------
consensus_9056#1 ACTCGTAAATTATGGGATGGTTATTCATTTTTAAGTATGACTGGATCGGATCGAGCTCAT 120
consensus_9056#0 ------------------------------------------------------------
consensus_9056#1 GTTAACGATCTAGCTAGTCCTGGTTCATGTCTACAATTATTTAATCCAATACCGTTTATG 180
consensus_9056#0 ----------CCTCCGAGGCCAANAATTCGGCACGAGG-------CGAAGCTATTGGCTG 43
consensus_9056#1 TTTTGTGAAAAACAAGAAAATTGTTATTATGCTCAACGAAATGATCGAAGCTATTGGCTG 240
** *** ** * * * ***************
consensus_9056#0 AGTACAGAAGAAGAACCAATGATGTGGAATCCAGTTCCAGCAAATGAAACTCAAAGATAT 103
consensus_9056#1 AGTACAGAAGAAGAACCAATGATGTGGAATCCAGTTCCAGCAAATGAAACTCAAAGATAT 300
************************************************************
consensus_9056#0 ATAAGTAGATGTGCAGTTTGTGAAGCTTCCAGTAAACTTTATGCTTTCCATTCGCAAACT 163
consensus_9056#1 ATAAGTAGATGTGCAGTTTGTGAAGCTTCCAGTAAACTTTATGCTTTCCATTCGCAAACT 360
************************************************************
consensus_9056#0 TTGAAGATTCCTAAATGTCCTGATGGTTGGTCCACTCTGTGGCCGGGAAGTAGTTTCTTT 223
consensus_9056#1 TTGAAGATTCCTAAATGTCCTGATGGTTGGTCCACTCTGTGGCCGGGAAGTAGTTTCTTT 420
************************************************************
consensus_9056#0 ATGAATACTGGTTATGGAGCACAAGGTGGAGGACAACAGCTAGCATCTCCAGGTAGTTGT 283
consensus_9056#1 ATGAATACTGGTTATGGAGCACAAGGTGGAGGACAACAGCTAGCATCTCCAGGTAGTTGT 480
************************************************************
consensus_9056#0 TTACCACAGTTCCGATCTCATATGTTTATTGAATGTACTGCTAAAGGTTTATGTGGATTT 343
consensus_9056#1 TTACCACAGTTCCGATCTCATATGTTTATTGAATGTACTGCTAAAGGTTTATGTGGATTT 540
************************************************************
consensus_9056#0 TTTGAAGAACATAAAAATTTCTGGTTACGTGTTATGCCTAGTTCTATGGATGAGCATATG 403
consensus_9056#1 TTTGAAGAACATAA---------------------------------------------- 554
**************
consensus_9056#0 TTTGGCATGGTAATGGGCACTGTAATCAAAGTACGTAATAGTCAAGATTCAGTTGGTAAA 463
consensus_9056#1 ------------------------------------------------------------
consensus_9056#0 TGCGCTGTATGTATGAGAACACAACCATTGTCAACATTATTTTATTTAAATTAATCATGC 523
consensus_9056#1 ------------------------------------------------------------
consensus_9056#0 TTTTAATTTCTTTTTTTAAGCATTACATATGATAATACTTTCTCTTTCTTCTGTTTATTA 583
consensus_9056#1 ------------------------------------------------------------
consensus_9056#0 AAACANAACANATTATTGTCAGAATTTTTAAATTTAAAATACTTATGTTATTTTATTTTT 643
consensus_9056#1 ------------------------------------------------------------
consensus_9056#0 TGAGAAAAAAAGTTTCCAAAATGTATTTATATCATGTTGGGATAAATTTTGTTTGCTATT 703
consensus_9056#1 ------------------------------------------------------------
consensus_9056#0 T 704
consensus_9056#1 -
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||