cluster # 9066

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Schistosoma mansoni
cluster # 9066 cluster # 9066 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9066#0 length = 433 sequences # 1

consensus_9066#1 length = 391 sequences # 6
consensus_9066#2 length = 326 sequences # 1

consensusID : consensus_9066#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 433
fasta sequence

                              [TTCAACGGAATCGGAAGGGTCTTGATCAGAACCGAAGCCACCAATAACAACTAAGTACTCATTGCCACCGTCACGCTGACGAAATCTTCGATCACGCATTTCATGGCGTAAATCTGGACGTAAATGAAACCGTTTAGCATCATCTACCAAATCCCGACACTCGAGAGATTGTCGAATAAGACGATCTTTATCCACAACATCTGTGAGGAATCGAACTGACATAACTGAAAGACGAATGTTCCGAAGCAAAGAAGGAAGATTCGCGACCCTTTCAATGGGTTGATGATACACCCAGCGCATAACAGCGTTATATACAGATTCTTCATTGTCAATATGTAAATCTTCTCTTGTAATAAGATCAAGCAATTCCTCAGGTGTGAGGCATACGAATTCCTCAGATTCAACAACTGACTCAAAATTACAAGCTGCAAAG]

[+] EMBL CD186293             [TTCAACGGAATCGGAAGGGTCTTGATCAGAACCGAAGCCACCAATAACAACTAAGTACTCATTGCCACCGTCACGCTGACGAAATCTTCGATCACGCATTTCATGGCGTAAATCTGGACGTAAATGAAACCGTTTAGCATCATCTACCAAATCCCGACACTCGAGAGATTGTCGAATAAGACGATCTTTATCCACAACATCTGTGAGGAATCGAACTGACATAACTGAAAGACGAATGTTCCGAAGCAAAGAAGGAAGATTCGCGACCCTTTCAATGGGTTGATGATACACCCAGCGCATAACAGCGTTATATACAGATTCTTCATTGTCAATATGTAAATCTTCTCTTGTAATAAGATCAAGCAATTCCTCAGGTGTGAGGCATACGAATTCCTCAGATTCAACAACTGACTCAAAATTACAAGCTGCAAAG]




>consensus_9066#0
TTCAACGGAATCGGAAGGGTCTTGATCAGAACCGAAGCCACCAATAACAACTAAGTACTC
ATTGCCACCGTCACGCTGACGAAATCTTCGATCACGCATTTCATGGCGTAAATCTGGACG
TAAATGAAACCGTTTAGCATCATCTACCAAATCCCGACACTCGAGAGATTGTCGAATAAG
ACGATCTTTATCCACAACATCTGTGAGGAATCGAACTGACATAACTGAAAGACGAATGTT
CCGAAGCAAAGAAGGAAGATTCGCGACCCTTTCAATGGGTTGATGATACACCCAGCGCAT
AACAGCGTTATATACAGATTCTTCATTGTCAATATGTAAATCTTCTCTTGTAATAAGATC
AAGCAATTCCTCAGGTGTGAGGCATACGAATTCCTCAGATTCAACAACTGACTCAAAATT
ACAAGCTGCAAAG

consensusID : consensus_9066#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 391
fasta sequence

                              [CACCGAGTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAGCACCTTCTGTTGATATATTCAAGACGAGATTGGACCTCCACAGTGTAACAAACTGCAAGGATTAAAATAGGTCACTAGACCTATCCTTATTACTGAAGACTGAAGACTATATATCCAACCACCGACGTGCAATGCTTTATGGTGTAGGAGTAGGTTGGAAGAAAGCTAGGGGCGGCCAGACCAAAACGTGGCACAAATCCATGAAGTCGCTGACAAGTGAACTGAGTCATGTTGGTAGGTGTAGACTACCTGGTTGGGATCCGCGAGATGATAACAATCGATGGTTAGAGACCTTGAATGACACGGCTCAAAATAGTTTGCAATGGCGAACCTCCTCCTCCT]

[+] EMBL CD183032             [CACCGAGTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAGCACCTTCTGTTGATATATTCAAGACGAGATTGGACCTCCACAGTGTAACAAACTGCAAGGATTAAAATAGGTCACTAGACCTATCCTTATTACTGAAGACTGAAGACTATATATCCAACCACCGACGTGCAATGCTTTATGGTGTAGGAGTAGGTTGGAAGAAAGCTAGGGGCGGCCAGACCAAAACGTGGCACANATCCATGAAGTCGCTGACAAGTGAACTGAGTCATGTTGGTAGGTGTAGACTACCTG                                                                                          ]
[+] EMBL CD183069             [CACCGAGTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAGCACCTTCTGTTGATATATTCAAGACGAGATTGGACCTCCACAGTGTAACAAACTGCGAGGATTAAAATAGGTCACTAGACCTATCCTTATTACTGAAGACTGAAGACTATATATCCAACCACCGACGTGCAACGCTTTATGGTGTAGGAGTAGGTTGGAAGAAAGCTAGGGGCGGCCAGACCAAAACGTGGCACAAATCCATGAAGTCGCTGACAAGTGAACTGAGTCATGTT                                                                                                             ]
[+] EMBL CD182950             [CACCGAGTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAGCACCTTCTGTTGATATATTCAAGACGAGATTGGACCTCCACAGTGTAACAAACTGCAAGGATTAAAATAGGTCACTAGACCTATCCTTATTACTGAAGACTGAAGACTATATATCCAACCACCGACGTGCAATGCTTTATGGTGTAGGAGTAGGTTGGAAGAAAGCTAGGGGCGGCCAGACCANAACGTGGCACANATCCATGAAGTCGCTGACAAGTGAACTG                                                                                                                      ]
[+] EMBL CD183020             [CACCGAGTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAGCACCTTCTGTTGATATATTCAAGACGAGATTGGACCTCCACAGTGTAACAAACTGCAAGGATTAAAATAGGTCACTAGACCTATCCTTATTACTGAAGACTGAAGACTATATATCCAACCACCGACGTGCAATGCTTTATGGTGTAGGAGTAGGTTGGAAGAAAGCTAGGGGCGGCTAGACCAAAACGTGGCACAAATCCATGA                                                                                                                                          ]
[+] EMBL CD183030             [CACCGAGTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAGCACCTTCTGTTGATATATTCAAGACGAGATTGGACCTCCACAGTGTAACAAACTGCAAGGATTAAAATAGGTCACTCGACCTATCCTTATTACTGAAGACTGAAGACTATATATCCAACCACCGACGTGCAATGCTTTATGGTGTAGGAGTAGGTTGGAAGAAAGCTAGGGGCGGCCAGACCAA                                                                                                                                                              ]
[-] EMBL CD178968             [                                              CAGCACCTTCTGTTGATATATTCAAGACGAGATTGGACCTCCACAGTGTAACAAACTGCAAGGATTAAAATAGGTCACTAGACCTATCCTTATTACTGAAGACTGAAGACTATATATCCAACCACCGACGTGCAATGCTTTATGGTGTAGGAGTAGGTTGGAAGAAAGCTAGGGGCGGCCAGACCAAAACGTGGCACAAATCCATGAAGTCGCCGACAAGTGAACTGAGTCATGTTGGTAGGTGTAGACTACCTGGTTGGGATCCGCGAGATGATAACAATCGATGGTTAGAGACCTTGAATGACACGGCTCAAAATAGTTTGCAATGGCGAACCTCCTCCTCCT]




>consensus_9066#1
CACCGAGTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAGCACCTTCTGTT
GATATATTCAAGACGAGATTGGACCTCCACAGTGTAACAAACTGCAAGGATTAAAATAGG
TCACTAGACCTATCCTTATTACTGAAGACTGAAGACTATATATCCAACCACCGACGTGCA
ATGCTTTATGGTGTAGGAGTAGGTTGGAAGAAAGCTAGGGGCGGCCAGACCAAAACGTGG
CACAAATCCATGAAGTCGCTGACAAGTGAACTGAGTCATGTTGGTAGGTGTAGACTACCT
GGTTGGGATCCGCGAGATGATAACAATCGATGGTTAGAGACCTTGAATGACACGGCTCAA
AATAGTTTGCAATGGCGAACCTCCTCCTCCT

consensusID : consensus_9066#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 326
fasta sequence

                              [GGTAGTAAGAGTATAAACCGTAATCCGAAAGATAGGGTTTGAAGATGTCATTCAAGGAGTATAATAAATAAATTTGAAATAAATTTGGAAAGAGAAAAAGGAGAGGGACATGAGGAATTCAGAAGATTAGAAGTTGGTAGAACACAAAGAGTGGATGAACCTTCGCCATTGCAAACGATTTTGAGCCATGTCATTCAAGGTCTCTAACCATCGGTTGCTGTTATCTCGTGGATCCCAACCAGGTAGTCTACACCTACCAATATGGCTCAGTCCACTTGTCAGTGACTTCATGGATTTGTGCCACGTTTTGGTCTGGCGGCCCCTAG]

[+] EMBL CD128181             [GGTAGTAAGAGTATAAACCGTAATCCGAAAGATAGGGTTTGAAGATGTCATTCAAGGAGTATAATAAATAAATTTGAAATAAATTTGGAAAGAGAAAAAGGAGAGGGACATGAGGAATTCAGAAGATTAGAAGTTGGTAGAACACAAAGAGTGGATGAACCTTCGCCATTGCAAACGATTTTGAGCCATGTCATTCAAGGTCTCTAACCATCGGTTGCTGTTATCTCGTGGATCCCAACCAGGTAGTCTACACCTACCAATATGGCTCAGTCCACTTGTCAGTGACTTCATGGATTTGTGCCACGTTTTGGTCTGGCGGCCCCTAG]




>consensus_9066#2
GGTAGTAAGAGTATAAACCGTAATCCGAAAGATAGGGTTTGAAGATGTCATTCAAGGAGT
ATAATAAATAAATTTGAAATAAATTTGGAAAGAGAAAAAGGAGAGGGACATGAGGAATTC
AGAAGATTAGAAGTTGGTAGAACACAAAGAGTGGATGAACCTTCGCCATTGCAAACGATT
TTGAGCCATGTCATTCAAGGTCTCTAACCATCGGTTGCTGTTATCTCGTGGATCCCAACC
AGGTAGTCTACACCTACCAATATGGCTCAGTCCACTTGTCAGTGACTTCATGGATTTGTG
CCACGTTTTGGTCTGGCGGCCCCTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9066#0      TTCAACGGAATCGGAAGGGTCTTGA--TCAGAACCGAAGCCACCAATAACAACTAAGTAC 58
consensus_9066#2      --------------------------------------------GGTAGTAA--GAGTAT 14
consensus_9066#1      ---CACCGAGTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAGC--ACCTT 55
                                                                    **  *    *    

consensus_9066#0      TCATTGCCACCGTCACGCTGACGA-AATCTTCGATCACGCATTTCATGGCGTAAATCTGG 117
consensus_9066#2      AAACCGTAATCCGAAAGATAGGG------TTTGAAGATGTCATTCAAGGAGTATAA-TAA 67
consensus_9066#1      CTGTTGATATATTCAAGACGAGATTGGACCTCCACAGTGTAACAAACTGCAAGGATTAAA 115
                           *  *     * *             *  *    *      *  *     *     

consensus_9066#0      ACGTAA-ATGAAACCGTTTAGCATCATCTACCAAATCCCGACACTCGAGAGATTGTCGAA 176
consensus_9066#2      ATAAAT-TTGAAATAAATTTGGAA-AGAGAAAAAGGAGAGGGACATGAGGAAT--TCAGA 123
consensus_9066#1      ATAGGTCACTAGACCTATCCTTATTACTGAAGACTGAAGACTATATATCCAACCACCGAC 175
                      *         * *    *    *  *   *  *         *        *    *   

consensus_9066#0      TAAGACGATCTTTATCCACAACATCTGTGAGGAATCGAACTGACATAACTGAAAGACGAA 236
consensus_9066#2      AGATTAGAAGTTGGT--AGAACA-CAAAGAGTGGATGAACCTTCGCCATTGCAA-ACGA- 178
consensus_9066#1      GTGCAATGCTTTATGGTGTAGGAGTAGGTTGGAAGAAAGCTA--GGGGCGGCCAGACCAA 233
                                **       *  *       *      * *          *  * ** * 

consensus_9066#0      TGTTCCGAAGCAAAGAAGGAAGATTCGCGACCCTTTCAATGGGTTGATGATACACCCAGC 296
consensus_9066#2      --TTTTGAGCCATGTCATTCAAGGTCTCTAACC-----ATCGGTTGCTGTTA--TCTCGT 229
consensus_9066#1      AACGTGGCACAAATCCATGAAG--TCGCTGACAAGTGAACTGAGTCATGTTG--GTAGGT 289
                            *    *    *   *   ** *   *      *  *  *  ** *       * 

consensus_9066#0      GCATAACAGCGTTATATACAGATTCTTCATTGTCAATATGTAAATCTTCTCTTGT-AATA 355
consensus_9066#2      GGATCCCAAC----CAGGTAGTCTACAC-CTACCAATATGGCTCAGTCCACTTGTCAGTG 284
consensus_9066#1      GTAGACTACC----TGGTTGGGATCCGC------GAGATGATAACAATCGATGGTTAGAG 339
                      * *    * *          *  *   *       * ***        *  * ** *   

consensus_9066#0      AGATCAAGCAATTCC-TC----AGGTGTGAGGCATACGAATTCCTCAGATTCAACAACTG 410
consensus_9066#2      ACTTCATGGATTTGTGCC----ACGTTTTGGTCTGGCGG--CCCCTAG------------ 326
consensus_9066#1      ACCTTGAATGACACGGCTCAAAATAGTTTGCAATGGCGAACCTCCTCCTCCT-------- 391
                      *  *                  *    *        **     *                

consensus_9066#0      ACTCAAAATTACAAGCTGCAAAG 433
consensus_9066#2      -----------------------
consensus_9066#1      -----------------------