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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 933 fasta sequence
[GATTGGGCGCTCCAAATGCTTCATCTTTTCCACTGTTTTTGATTGATTGACCGAATGACAGGAGTTTCGTGTGTGTTATTACTCAATTCATCTGAAGGAAACAGTGATCCACAGATTCTTGAGAATCTTATGAAGAAATTAGAACTTCTTGGTGCACAAAAGTGCGGTCGAATACATATAGAAAGCGCAGTTTACTTTTCAAACTTTTCCAGGTCTCAGTGTAAAACATTTCAAGTTCTCACATCAACTGAATATCCAGCATCATGTTTTGTATTCTCTGACAATCA-AACAGCTCTTGTTGCCGATATATCTTTTCGTGAATTCCCAGGGTGCTTAAAAGCCTTTTATCAACGTAAGAAGAAATTACAAGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGTTTGTTTTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTTCGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAAACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTCAAATATTCCGTCTAATCAAGCTAACAAGAACATTCCATCTAACTATTCAACATAATAACTTCAATGTTTATTTGTTTTTAATTAATAAAATATTATA]
[+] EMBL CD079290 [GATTGGGCGCTCCAAATGCTTCATCTTTTCCACTGTTTTTGATTGATTGACCGAATGACAGGAGTTTCGTGTGTGTTATTACTCAATTCATCTGAAGGAAACAGTGATCCACAGATTCTTGAGAATCTTATGAAGAAATTAGAACTTCTTGGTGCACAAAAGTGCGGTCGAATACATATAGAAAGCGCAGTTTACTTTTCAAACTTTTCCAGGTCTCAGTGTAAAACATTTCAAGTTCTCACATCAACTGAATATCCAGCATCATGTTTTGTATTCTCTGACAATCA AACAGCTCTTGTTGCCGATATATCTTTTCGTGAATTCCCAGGGTGCTTAAAAGCCTTTTATCAACGTAAGAAGAAATTACAAGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGTTTGTTTTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCA ]
[+] EMBL CD189851 [ ACATTTCAAGTTCTCACATCAACTGAATATCCAGCATCATGTTTTGTATTCTCTGACAATCA AACAGCTCTTGTTGCCGATATATCTTTTCGTGAATTCCCAGGGTGCTTAAAAGCCTTTTATCAACGTAAGAAGAAATTACAAGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGTTTGTTTTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAA AATACC ]
[+] EMBL CD081481 [ gagcctTATTC GGCACGCAGAACAGCTCTTGTTGCCGATATATCTTTTCGTGAATTCCCAGGGTGCTTAAAAGCCTTTTATCAACGTAAGAAGAAATTACAAGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACTATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGTTTGTTTTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTTCGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAAACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTCAAATATTCCGTCTAATCAAGCTAACAAGAACATTCCATCTAACTATTCAACATAATAACTTCAATGTTTATTTGTTTTTAATTAATAAAATATTAT ]
[-] EMBL CD075305 [ GGTTGTTTTTCATGCATCCAGCATGATACATNTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTTCGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAAACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTCAAATATTCCGTCTAATCAAGCTAACAAGAACATTCCATCTAACTATTCAACATAATAACTTCAATGTTTATTTGTTTTTAATTAATAAAATATTATA]
consensusID : consensus_9067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 827 fasta sequence
[AGGCAACAGCTCTTGTTGCCGATATATCTTTTCGTGCAATTCCCAGGGGTGGCTTAAAANGCCTTTTATCAACGTAAGAAGAAATTAC-AGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGGTGTCTACAGCGATTAATTCTTTATGCTGGTGTTTCTTGGAGCCCAGGATTTCCTAGCATGCTGAAGTTATTCGTGCTTTAATCTTTTCCAGTTCTCCATGCTGTTTTCCTCTTTTAATGGAATTTGTTGTTGAGATCTCTTTTGAACTCATTAAGCTTGTTACCATCTGGAAGGTTTGTTTTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTTCGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAAACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTCAAATATTCCGTCTAATCAAGCTAACAAGAACATTCCATCTAACTATTCAACATAATAACTT-CAATGTTTATTTGTTTTTAATTAAT-A-AATATTATA]
[+] EMBL CD081193 [AGGCAACAGCTCTTGTTGCCGATATATCTTTTCGTGCAATTCCCAGGGGTGGCTTAAAANGCCTTTTATCAACGTAAGAAGAAATTAC AGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGGTGTCTACAGCGATTAATTCTTTATGCTGGTGTTTCTTGGAGCCCAGGATTTCCTAGCATGCTGAAGTTATTCGTGCTTTAATCTTTTCCAGTTCTCCATGCTGTTTTCCTCTTTTAATGGAATTTGTTGTTGAGATCTCTTTTGAACTCATTAAGCTTGTTACCATCTGGAAGGTTTGTTTTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTTCGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAAACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTC AATATTCCGTCTAAT AAGCTAAC AGAACATTCCATCT ACTATT AACATAATAACTT C ATGTTTATTTGTTTTT ATTAAT A AATATTA ]
[-] EMBL CD075021 [ caGGGT GCTTAAAA GCCTTTTATCAACGTAAGAAGAAATTACAAGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGGTGTCTACAGCGATTAATTCTTTATGCTGGTGTTTCTTGGAGCCCAGGATTTCCTAGCATGCTGAAGTTATTCGTGCTTTAATCTTTTCCAGTTCTCCATGCTGTTTTCCTCTTTTAATGGAATTTGTTGTTGAGATCTCTTTTGAACTCATTAAGCTTGTTACCATCTGGAAGGTTTGTTTTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTTCGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAAACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTCAAATATTCCGTCTAATCAAGCTAACAAGAACATTCCATCTAACTATTCAACATAATAACTTCCAATGTTTATTTGTTTTTAATTAAT AGAATATTATA]
[-] EMBL CD074739 [ GATTAATTCTTTATGCTGGTGTTTCTTGGAGCCCAGGATTTCCTAGCATGCTGAAGTTATTCGTGCTTTAATCTTTTCCAGTTCTCCATGCTGTTTTCCTCTTTTAATGGAATTTGTTGTTGAGATCTCTTTTGAACTCATTAAGCTTGTTACCATCTGGAAGGTTTGTTTTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTTCGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAAACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTCAAATATTCCGTCTAATCAAGCTAACAAGAACATTCCATCTAACTATTCAACATAATAACTT CAATGTTTATTTGTTTTTAATTAATAA AATATTATA]
consensusID : consensus_9067#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence
[NNNNNNNNNNNNNNNAGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGGTGTCTACAGCGATTAATTCTTTATGCTGGTGTTTCTTGGAGCCCAGGATTTNNNNNNNNCTGAAGTTATTCGTGCTTTAATCTTTTCCAGTTCTCCATGCTGTTTTCCTCTTTTAATGGAATTTGTTGTTGAGATCTCTTTTGAACTCATTAAGCTTGTTACCATCTGGAAGGTTTGTTTTCATGCATCCAGCATGATACATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATGCAGACATATCAACGTTGTTAGACGTTTATCAGGCANACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCCACTCCTTTCAATATTCCGTCTAATAAGCTAACAGGACATTCCATCTACTATTCACATATAACTTCATGTTTATTTGTTTTAATTATAAATATA]
[+] EMBL CD080906 [NNNNNNNNNNNNNNNAGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGGTGTCTACAGCGATTAATTCTTTATGCTGGTGTTTCTTGGAGCCCAGGATTTNNNNNNNNCTGAAGTTATTCGTGCTTTAATCTTTTCCAGTTCTCCATGCTGTTTTCCTCTTTTAATGGAATTTGTTGTTGAGATCTCTTTTGAACTCATTAAGCTTGTTACCATCTGGAAGGTTTGTTTTCATGCATCCAGCATGATACATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATGCAGACATATCAACGTTGTTAGACGTTTATCAGGCANACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCCACTCCTTTCAATATTCCGTCTAATAAGCTAACAGGACATTCCATCTACTATTCACATATAACTTCATGTTTATTTGTTTTAATTATAAATATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9067#1 ------------------------------------------------------------
consensus_9067#2 ------------------------------------------------------------
consensus_9067#0 GATTGGGCGCTCCAAATGCTTCATCTTTTCCACTGTTTTTGATTGATTGACCGAATGACA 60
consensus_9067#1 -----------AGGCAACAGCTCTTGTTGCCGATATATCTTTTCGTGCAATTCCCAGGGG 49
consensus_9067#2 ------------------------------------------------------------
consensus_9067#0 GGAGTTTCGTGTGTGTTATTACTCAATTCATCTGAAGGAAACAGTGATCCACAGATTCTT 120
consensus_9067#1 TGGCTTAAAANGCCTTTTATCAACGTAAGAAGAAATTACAGTTGAAGCTAAAGGAATAAA 109
consensus_9067#2 ------------------------NNNNNNNNNNNNNNNAGTTGAAGCTAAAGGAATAAA 36
consensus_9067#0 GAGAATCTTATGAAGAAATTAGAACTTCTTGGTGCACAAAAGTGCGGTCGAATACATATA 180
* ** * ** *** *
consensus_9067#1 GTATCAGTTGGGTGATTTTACAATTAATTTTA-TCACAATATTCATGGGACAGAGTGCTT 168
consensus_9067#2 GTATCAGTTGGGTGATTTTACAATTAATTTTA-TCACAATATTCATGGGACAGAGTGCTT 95
consensus_9067#0 GAAAGCGCAGTTTACTTTTCAAACTTTTCCAGGTCTCAGTGTAAAACATTTCAAGTTCTC 240
* * * * * **** ** * * ** ** * * * *** **
consensus_9067#1 CCGTTAAA-GGATATTTA--ATCGAGGGTG----TCTACAGCGATTAA----TTCTTTAT 217
consensus_9067#2 CCGTTAAA-GGATATTTA--ATCGAGGGTG----TCTACAGCGATTAA----TTCTTTAT 144
consensus_9067#0 ACATCAACTGAATATCCAGCATCATGTTTTGTATTCTCTGACAATCAAACAGCTCTTGTT 300
* * ** * **** * *** * * *** * ** ** **** *
consensus_9067#1 GCTGGTGTTTCTT---------------GGAGCCCAGGA---TTTCCTAGCATGCTGAAG 259
consensus_9067#2 GCTGGTGTTTCTT---------------GGAGCCCAGGA---TTTNNNNNNNN-CTGAAG 185
consensus_9067#0 GCCGATATATCTTTTCGTGAATTCCCAGGGTGCTTAAAAGCCTTTTATCAACGTAAGAAG 360
** * * * **** ** ** * * *** ****
consensus_9067#1 TTATTCGTGCTTTAATCTTTTCCAGTTCTCCATGCTGTTTTCCTCTTTTAATGGAATTTG 319
consensus_9067#2 TTATTCGTGCTTTAATCTTTTCCAGTTCTCCATGCTGTTTTCCTCTTTTAATGGAATTTG 245
consensus_9067#0 AAATTACAAGTTGAAGCTAAAGGAATAAAGTAT-CAGTTGGGTGATTTTACAATTAATT- 418
*** ** ** ** * * ** * *** ***** * **
consensus_9067#1 TTGTTGAGATCTCTTTTGAACTCATTAAGCTTGTTAC----CATCTGG--AAGGTTTGTT 373
consensus_9067#2 TTGTTGAGATCTCTTTTGAACTCATTAAGCTTGTTAC----CATCTGG--AAGGTTTGTT 299
consensus_9067#0 TTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGTTTGTT 478
** * ** * * * ** * * **** ** * *********
consensus_9067#1 TTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCC-AA 432
consensus_9067#2 TTCATGCATCCAGCATGATACATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAA 359
consensus_9067#0 TTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCC-AA 537
************************** * **
consensus_9067#1 GTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCG 492
consensus_9067#2 GTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCG 419
consensus_9067#0 GTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCG 597
************************************************************
consensus_9067#1 TTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTA 552
consensus_9067#2 TTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTA 479
consensus_9067#0 TTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTA 657
************************************************************
consensus_9067#1 GCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTT 612
consensus_9067#2 GCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCAT----------------- 522
consensus_9067#0 GCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTT 717
*******************************************
consensus_9067#1 CGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAA 672
consensus_9067#2 ---------------------GCAGA-CATATCAACGTTGTTAGACGTTTATCA-GGCAN 559
consensus_9067#0 CGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAA 777
***** *************************** ****
consensus_9067#1 ACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTCA 732
consensus_9067#2 ACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCCACTCCTTTC 619
consensus_9067#0 ACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTCA 837
************************************************** *******
consensus_9067#1 AATATTCCGTCTAATCAAGCTAACAAGAACATTCCATCTAACTATTCAACATAATAACTT 792
consensus_9067#2 AATATTCCGTCTAAT-AAGCTAACAGGA-CATTCCATCTA-CTATTCA-CATA-TAACTT 674
consensus_9067#0 AATATTCCGTCTAATCAAGCTAACAAGAACATTCCATCTAACTATTCAACATAATAACTT 897
*************** ********* ** *********** ******* **** ******
consensus_9067#1 CAATGTTTATTTGTTTTTAATTAATAAA-TATTATA 827
consensus_9067#2 CA-TGTTTATTTGTTTT-AATTA-TAAA-TATA--- 703
consensus_9067#0 CAATGTTTATTTGTTTTTAATTAATAAAATATTATA 933
** ************** ***** **** ***
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||