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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9074#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1034 fasta sequence
[ACGAGGCCANAATTCGGCACGAGGCGAATTCTTCACATACTAATACTACTGTTGTACCATCATCTTCATTGTCATCGAGTAAATCTCTAAGTAAACGTGGACTAAAGCGTGAACTAGAAGATTTAGTTGCATCAGTTGTGAATCATTCACCAAGCAAAAGTCAACATGGACTCAGTTCGCCTACATTGACCAATCGAAACGAGACACAGTCATTGACTTTTATTAGTACTACTAATTCTACGACCACTGAAGATCAAACATCGTACAAGTCATCTGATCTAATTTTATGCAGTAAACACGATTGTTCTAAAGCTTATCATTTATTCTGTCTTGATTTAGATACACCACCTCAAGGTCAGTGGTTTTGTCCCTGGCACCATTGTGACGCATGCGGTCGTCCTTCTCATATTTTCTGTTCCATATGTCCATCTTCATTTTGTCTGGC-TCATGTTGAAGGTAGTATTGTTGTTCTGCCTCCAGTTCTACCAAAACGCAATCGTAAACTATCTAACAATCGATCTGAAAATAATGTTGACCCTATAGAAAATGGAAAATTCTACGCTCTCCTTGCTCGAATCGTTTGTATGTTTCACCATGACTTGATAAATAATGTTCACGACCGACCTGTATTAAAGAAAAAGAAGCCTAATCTACTAATGTCATCAACGTCGGATAAATCTGGGTAGTGTGAGAAAAATGTTTGTTCTGAAATGCCACAAGATCATTTGGATGGTAATAATGGTAGTCACTCCTCAGGATTGATGGTGACAAGACGTCAAAGCCTTTTGCGTCAGTCAGCAATATCCCAAGCTAAACATTGCAATGATATTAGTACGCCCAATAACAATGATAGTAATAATTCGACTAGTTCGTGTGGTTTAGAAACGAAGCAAAATGACTGTCTTTCAAATTGTGTAAACACAACACCAAATCGAACTATTGAGACCAACTAGAGATTGGTAGACTAATTTCAATGTCTGTTTATATGTGTATAATTGTATTACTTATTTTTTTTATACAAATAATAAAACTTG]
[+] EMBL CD080747 [ACGAGGCCANAATTCGGCACGAGGCGAATTCTTCACATACTAATACTACTGTTGTACCATCATCTTCATTGTCATCGAGTAAATCTCTAAGTAAACGTGGACTAAAGCGTGAACTAGAAGATTTAGTTGCATCAGTTGTGAATCATTCACCAAGCAAAAGTCAACATGGACTCAGTTCGCCTACATTGACCAATCGAAACGAGACACAGTCATTGACTTTTATTAGTACTACTAATTCTACGACCACTGAAGATCAAACATCGTACAAGTCATCTGATCTAATTTTATGCAGTAAACACGATTGTTCTAAAGCTTATCATTTATTCTGTCTTGATTTAGATACACCACCTCAAGGTCAGTGGTTTTGTCCCTGGCACCATTGTGACGCATGCGGTCGTCCTTCTCATATTTTCTGTTCCATATGTCCATCTTCATTTTGTCTGGC TCATGTTGAAGGTAGTATTGTTGTTCTGCCTCCAGTTCTACCAAAACGCAATCGTAAACTATCTAACAATCGATCTGAAAATAATGTTGACCCTATAGAAAATGGAAAATTCTACGCTCTCCTTGCTCGAATCGTTTGTATGTTTCACCATGACTTGATAAATAATGTTCACGACCGACCTGTATTAAAGAAAAAGAAGCCTAATCTACTAATGTCATCAACGTCGGATAAATCTGGGTAGTGTGAGAAAAATGTTTGT ]
[+] EMBL CD077632 [ CGAATTCTTCACATACTAATACTACTGTTGTACCATCATCTTCATTGTCATCGAGTAAATCTCTAAGTAAACGTGGACTAAAGCGTGAACTAGAAGATTTAGTTGCATCAGTTGTGAATCATTCACCAAGCAAAAGTCAACATGGACTCAGTTCGCCTACATTGACCAATCGAAACGAGACACAGTCATTGACTTTTATTAGTACTACTAATTCTACGACCACTGAAGATCAAACATCGTACAAGTCATCTGATCTAATTTTATGCAGTAAACACGATTGTTCTAAAGCTTATCATTTATTCTGTCTTGATTTAGATACAC ]
[-] EMBL CD074672 [ TTCA TTTGTCTGGCNTCATGTTGAAGGTAGTATTGTTGTTCTGCCTCCAGTTCTACCAAAACGCAATCGTAAACTATCTAACAATCGATCTGAAAATAATGTTGACCCTATAGAAAATGGAAAATTCTACGCTCTCCTTGCTCGAATCGTTTGTATGTTTCACCATGACTTGATAAATAATGTTCACGACCGACCTGTATTAAAGAAAAAGAAGCCTAATCTACTAATGTCATCAACGTCGGATAAATCTGGTAAGTGTGAGAAAAATGTTTGTTCTGAAATGCCACAAGATCATTTGGATGGTAATAATGGTAGTCACTCCTCAGGATTGATGGTGACAAGACGTCAAAGCCTTTTGCGTCAGTCAGCAATATCCCAAGCTAAACATTGCAATGATATTAGTACGCCCAATAACAATGATAGTAATAATTCGACTAGTTCGTGTGGTTTAGAAACGAAGCAAAATGACTGTCTTTCAAATTGTGTAAACACAACACCAAATCGAACTATTGAGACCAACTAGAGATTGGTAGACTAATTTCAATGTCTGTTTATATGTGTATAATTGTATTACTTATTTTTTTTATACAAATAATAAAACTTG]
[+] EMBL AF155785 [ TTGTTCTGCCTCCAGTTCTACCAAAACGCAATCGTAAACTATCTAACAATCGATCTGAAAATAATGTTGACCCTATAGAAAATGGAAAATTCTACGGACTCCTTGCTCGANTCGTTTGTATGTNTCACCATGACTTGATAAATAATGTTCACGNCCGACCTGTATTAAAGAAAAAGGAGCCTAATCTACTAAT ]
consensusID : consensus_9074#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 912 fasta sequence
[CTGATGGAGGCCCAGAGTGGTAATTTAAGCCGTTTTATGAATCATTCATGTGATCCAAATCTGAATACACAAAAATGGACTGTTAATGGAGATAATAGAATTGGTTTATTTGCTGTCAGAGATATATCTGTTGGTGATTTATTAACATTCAACTATAATTTTGTTGCATTGGGTCAAGAACGTTTGAATTGTCGATGTGGTGCGTCAAATTGTGTTGGTTTTCTTGGTGCACGTTCAGAATCATCAAATAATAATAATGGTAATGGACAAGCTGGTGGCAACTCATCTCATTATGGTGAATCAAATAATTCATCAAATGCCCTAATTAACACAGATATTAGTCGTGGATCATCTAAACGTCATACCGCTCAAACAAATCCACGCTCCAACGATATTGATAAGAGTTATGTGAAAGATGGACGTGATATATGTCCTAGTAAAGTTTCTAATCATAATCTATCTACTACTTCATTGGTGAACAATAACAAAAACGGTTCGATCAATGTGAATAGTCCCTTGAATATGAATAGACGTCACGAAACTAAATGTTTCCGGTGTGGTGAAAAATACGCTCCTGTTGGAAAGCGATCACTATCATTATTCAGTGAGACATTGAATCTAACGAATTCTTCACATACTAATACTACTGTTGTACCATCATCTTCATTGTCATCGAGTAAATCTCTAAGTAAACGTGGACTAAAGCGCGAACTAGAAGATTTAGTTGCATCAGTTGTGAATCATTCACCAAGCAAAAGTCAACATGGACTCAGTTCGCCTACATTGACCAATCGAAACGAGACACAGTCATTGACTTTTATTAGTACTACTAATTCTACGACCACTGAAGATCAAACATCGTACAAGTCATCTGATCTAATTTTATGCAGAAAACACGATTGTTCTAAAGCT]
[+] EMBL CD114541 [CTGATGGAGGCCCAGAGTGGTAATTTAAGCCGTTTTATGAATCATTCATGTGATCCAAATCTGAATACACAAAAATGGACTGTTAATGGAGATAATAGAATTGGTTTATTTGCTGTCAGAGATATATCTGTTGGTGATTTATTAACATTCAACTATAATTTTGTTGCATTGGGTCAAGAACGTTTGAATTGTCGATGTGGTGCGTCAAATTGTGTTGGTTTTCTTGGTGCACGTTCAGAATCATCAAATAATAATAATGGTAATGGACAAGCTGGTGGCAACTCATCTCATTATGGTGAATCAAATAATTCATCAAATGCCCTAATTAACACAGATATTAGTCGTGGATCAT ]
[+] EMBL CD114464 [ GTTTTATGAATCATTCATGTGATCCAAATCTGAATACACAAAAATGGACTGTTAATGGAGATAATAGAATTGGTTTATTTGCTGTCAGAGATATATCTGTTGGTGAAGAGTTAACATTCAACTATAATTTTGTTGCATTGGGTCAAGAACGTTTGAATTGTCGATGTGGTGCGTCAAATTGTGTTGGTTTTCTTGGTGCACGTTCAGAATCATCAAATAATAATAATGGTAATGGACAAGCTGGTGGCAACTCATCTCATTATGGTGAATCAAATAATTCATCAAATGCCCTAATTAACACAGATATTAGTCGTGGATCAT ]
[-] EMBL CD114253 [ GCAACTCATCTCATTATGGGGAATCAAATAATTCATCAAATGCCCTAATTAACACAGATATTAGTCGTGGATCATCTAAACGTCATACCGCTCAAACAAATCCACGCTCCAACGATATTGATAAGAGTTATGTGAAAGATGGACGTGATATATGTCCTAGTAAAGTTTCTAATCATAATCTATCTACTACTTCATTGGTGAACAATAACAAAAACGGTTCGATCAATGTGAATAGTCCCTTGAATATGAATAGACGTCACGAAACTAAATGTTTCCGGTGTGGTGAAAAATACGCTCCTGTTGGAAAGCGATCACTATCATTATTCAGTGAGACATTGAATCTAACGAATTCTTCACATACTAATACTACTGTTGTACCATCATCTTCATTGTCATCGAGTAAATCTCTAAGTAAACGTGGACTAAAGCGCGAACTAGAAGATTTAGTTGCATCAGTTGTGAATCATTCACCAAGCAAAAGTCAACATGGACTCAGTTCGCCTACATTGACCAATCGAAACGAGACACAGTCATTGAC ]
[+] EMBL AI975437 [ ACGATATTGATAAGAGTTATGTGAAAGATGGACGTGATATATGTCCTAGTAAAGTTTCTAATCATAATCTATCTACTACTTCATTGGTGAACAATAACAAAAACGGTTCGATCAATGTGAATAGTCCCTTGAATATGAATAGACGTCACGAAACTAAATGTTTCCGGTGTGGTGAAAAATACGCTCCTGTTGGAAAGCGATCACTATCATTATTCAGTGAGACATTGAATCTAACGAATTCTTCACATACTAATACTACTGTTGTACCATCATCTTCATTGTCATCGAGTAAATCTCTAAGTAAACGTGGACTAAAGCGTGAACTAGAAGATTTAGTTGCATCAGTTGTGAATCATTCACCAAGCAAAAGTCAACATGGACTCAGTTCGCCTACATTGACCAATCGAAACGAGACACAGTCATTGACTTTTATTAGTACTACTAATTCTACGACCACTGAAGATCAAACATCGTACAAGTCATCTGATCTAATTTTATGCAGAAAACACGATTGTTCTAAAGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9074#0 ACGAGGCCANAATTCGGCACGAGGCGAATTCTTCACATACTAATACTACTGTTGTACCAT 60
consensus_9074#1 ------------------------------------------------------------
consensus_9074#0 CATCTTCATTGTCATCGAGTAAATCTCTAAGTAAACGTGGACTAAAGCGTGAACTAGAAG 120
consensus_9074#1 -------------------------------------CTGATGGAGGCCCAGAGTGGTAA 23
** * ** * * * *
consensus_9074#0 ATTTAGTTGCATCAGTTGTGAATCATTCACCAAGCAAAAGTCAACATGGACTCAGTTCGC 180
consensus_9074#1 TTTAAGCCGTTT----TATGAATCATTCATGTGATCCAAATCTGAATACACAAAAATGGA 79
** ** * * * *********** ** ** ** ** * * *
consensus_9074#0 CTACATTGACCAATCGAAACGAGACACAGTCATTGACTTTTATTAGTACTACTAATTCTA 240
consensus_9074#1 CTGT------TAATGGAGATAATAGA-----ATTGG--TTTATT--TGCTGTCAGAGATA 124
** *** ** * * * * **** ****** * ** * **
consensus_9074#0 CGACCACTGAAGATCAAACATCGTACAAGTCATCTGATCTAATTTTATGCAGT-AAACAC 299
consensus_9074#1 TATCTGTTGGTGATTTATTAACATTCAACTA---TAATTTTGTTGCATTGGGTCAAGAAC 181
* ** *** * * * * *** * * ** * ** ** ** ** **
consensus_9074#0 GATTG--TTCTAAAGCTTATCATTTATTCTGTCTTGATTTAGATACACCACCTCAAGGTC 357
consensus_9074#1 GTTTGAATTGTCGATGTGGTGCGTCAAATTGTGTTGGTTTTCTTGGTGCACGTTCAGAAT 241
* *** ** * * * * * * *** *** *** * *** * **
consensus_9074#0 AGTGGTTTTGTCCCTGGCACCATTGTGACGCATGCGGTCGTCCTTCTCATATTTTCTGTT 417
consensus_9074#1 CATCAAATAATAATAATGGTAATGGACAAGCTGGTGGCAACTCATCTCAT-TATGGTGAA 300
* * * ** * * ** * ** * ****** * * **
consensus_9074#0 CCATATGTCCATCTTCATTTTGTCTGGCTCATGTTGAAGGTAGT-ATTGTTGTTCTGCCT 476
consensus_9074#1 TCAAATAAT--TCATCAAATGCCCTAATTAACACAGATATTAGTCGTGGATCATCTAAAC 358
** ** ** *** * ** * * ** **** * * * ***
consensus_9074#0 CCAGTTCTACCAAAACGCAATCGTAAACTATCTAACAATCGATCTGAAAATAATGTTGAC 536
consensus_9074#1 GTCATACCGCTCAAACAAATCC----ACGCTCCAACGATATTGATAAGAGTTATGTGAAA 414
* * * **** * * ** ** *** ** * * * * **** *
consensus_9074#0 CCTATAGAAAATGGAAAATTCTACGCTCTCCTTGCTCGAATCGTTTGTATGTTTCACCAT 596
consensus_9074#1 GATGGACGTGATATATGTCCTAGTAAAGTTTCTAATC--ATAATCTATCTACTACTTCAT 472
* * ** * * * ** ** * * * * * * ***
consensus_9074#0 GACTTGATAAATAATGTTCACGACCGACCTGTATTAAAGAAAAAGAAGCCTAATCTACTA 656
consensus_9074#1 ----TGGTGAACAATAA-CAAAAACGGTTCG-ATCAATGTGAATAGTCCCTTGAATATGA 526
** * ** *** ** * ** * ** ** * ** *** ** *
consensus_9074#0 AT-GTCATCA--ACGTCGGATAAATCTGGGTAGTGTGAGAAAAATGTTTGTTCTGAAATG 713
consensus_9074#1 ATAGACGTCACGAAACTAAATGTTTCCGG-TGTGGTGAAAAATACGCTCCTGTTGGAAAG 585
** * * *** * ** ** ** * **** *** * * * * ** ** *
consensus_9074#0 CCA-CAAGATCATTT----GGATGGTAATAATGGTAGTCACTCCTCAGGAT--TGATGGT 766
consensus_9074#1 CGATCACTATCATTATTCAGTGAGACATTGAATCTAACGAATTCTTCACATACTAATACT 645
* * ** ****** * * * * * ** * * ** ** * ** *
consensus_9074#0 GACAAGACGTCAAAGCCTTTTGCGTCAGTCAGCAATATCCCAAGCTAAACATTGCAATGA 826
consensus_9074#1 ACTGTTGTACCATCATCTTCATTGTCATCGAGTAA-ATCTCTAAGTAAACGT-GGACTAA 703
** *** **** ** ** *** * * ***** * * * * *
consensus_9074#0 TATTAGTACGCCCAATAACAATGA-TAGTAATAATT-CGACTAGTTCGTGTGGTTTAGAA 884
consensus_9074#1 ----AGCGCGAACTAGAAGATTTAGTTGCATCAGTTGTGAATCATTCACCAAGCA-AAAG 758
** ** * * ** * * * * * * * ** ** * *** * * *
consensus_9074#0 ACGAAGCAAAATGACTGTCTTTCAAATTGTGTAAACACAACACCAAATCGAACTATTGAG 944
consensus_9074#1 TCAACATGGACTCAGT-TCGCCTACATTGACCAATCGAAACG--AGACACAGTCATTGAC 815
* * * * * * ** * **** ** * *** * * * *****
consensus_9074#0 ACCAACTAGAGATTGGTAGACTAATTTCAATGTCTGTTTATATGTGTATAA-TTGTATTA 1003
consensus_9074#1 TTTTATTAGTACTACTAATTCTACGACCACTGAAGATCAAACATCGTACAAGTCATCTGA 875
* *** * * *** ** ** * * *** ** * * * *
consensus_9074#0 CTTATTTTTTTTATACAAATAATAAAACTTG--------- 1034
consensus_9074#1 TCTAATT---TTATGCAGAAAACACGATTGTTCTAAAGCT 912
** ** **** ** * ** * * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||