cluster # 9079

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Schistosoma mansoni
cluster # 9079 cluster # 9079 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9079#0 length = 1036 sequences # 6

consensus_9079#1 length = 484 sequences # 1
consensus_9079#2 length = 401 sequences # 1

consensusID : consensus_9079#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1036
fasta sequence

                              [TTCGGGCCAAAAATTCGGCACGAGGGCTGTCAATATGNGCTTTTACGACAAGTATGATTCCGGAACAAGCTCAAGTTAAAGATCGTGCTGATGAACTTCTATCTTTATGTAAAAAAGCAGTTGCTGACTGCAATAACGTGAAAACAACACTTGATTCACTTGACAAGTTACGTTGTAAACAACGTTGTTCCAAAGTTGTCAAAAGTCAATTGAAGTCCCTATACACACAGGCAATTAGTGAAGCTGAACATCAAAAAGCTACTCTTATGGCTGCTCTAGAAAAGGTATCGGAGATTCGTGCTATAGAATATAAGTTGAGAACACATGTTGGTCCGAAAAGTTTTCGCCGCGGTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGGATAGGTAAACCCGGTGAGAGTCCCCCTGCTCTGTGTGGTGCAACAGGACCATCACCAGATATTCCCGCTGATCCTGGTGATCATGTTGCTGCCCTTGTCCCAGAACCAGACGTGGCAGCTGCTGCTTGTAATTTATCTGAAGGTTGTATATTGGCTGAGGTTGTTTCGTATAATTCTGATAAAGAAATCTATGAGGTAGAAGATGTTGATGCCGAAGAAGGAAAGATGCGTTACTCTCTATCCTGTTCTAAAGTTATACCTTTACCAAAATGGAAAGCCAATCCGATTACAAATCCTGAGGCAATATTCAATAAAGGTTCTACTGTTTTGGCTCTTTATCCACAAACAACATGTTTCTACAAAGCAATTGTGGATGAAATTCCAACTCATATACATGATGAGTATTCCCTTTATTTTGAGGATTCATCCTACCCTGAAGGTTATGCTCCAGCTATTAAAATACCACAACGATATGTTATTCAATGTCCTGACAAAGAAGCAATGACGAGTAAACATTTAGACAGGTCAAAAAAACGTGGTAAAAAACTATGAAGTTATTACTTATAATCTTAACTTCTTCCATCTTGCAGTTGTGTAAATATAACTAGTTTCTTTGTTGAAAAAAAAAAAAAAAA]

[+] EMBL CD081953             [TTCGGGCCAAAAATTCGGCACGAGGGCTGTCAATATGNGCTTTTACGACAAGTATGATTCCGGAACAAGCTCAAGTTAAAGATCGTGCTGATGAACTTCTATCTTTATGTAAAAAAGCAGTTGCTGACTGCAATAACGTGAAAACAACACTTGATTCACTTGACAAGTTACGTTGTAAACAACGTTGTTCCAAAGTTGTCAAAAGTCAATTGAAGTCCCTATACACACAGGCAATTAGTGAAGCTGAACATCAAAAAGCTACTCTTATGGCTGCTCTAGAAAAGGTATCGGAGATTCGTGCTATAGAATATAAGTTGAGAACACATGTTGGTCCGAAAAGTTTTCGCCGCGGTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGGATAGGTAAACCCGGTGAGAGTCCCCCTGCTCTGTGTGGTGCAACAGGACCATCACCAGATATTCCCGCTGATCCTGGTGATCATGTTGCTGCCCTTGTCCCAGAACCAGACGTGGCAGCTGCTGCTTGTAATTTATCTGAAGGTTGTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD187323             [                                                   GTATGATTCCGGAACAAGCTCAAGTTAAAGATCGTGCTGATGAACTTCTATCTTTATGTAAAAAAGCAGTTGCTGACTGCAATAACGTGAAAACAACACTTGATTCACTTGACAAGTTACGTTGTAAACAACGTTGTTCCAAAGTTGTCAAAAGTCAATTGAAGTCCCTATACACACAGGCAATTAGTGAAGCTGAACATCAAGAAGCTACTCTTATGGCTGCTCTAGAAAAGGTATCGGAGATTCGTGCTATAGAATATAAGTTGAGAACACATGTTGGTCCGAAAAGTTTTCGCCGCGGTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGGATAGGTAAACCCGGTGAGAGTCCCCCTGCTCTGTGTGGTGCAACAGGACCATCACCAGATATTCCCGCTGATCCTGGTGATCATGTTGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD187314             [                                                                                                                              ACTGCAATAACGTGAAAACAACACGTGATTCACTTGACAAGTTACGTTGTAAACTACGTTGTTCCAAAGTTGTCAAAAGTCAATTGAAGTCCCTATACACACAGGCAATTAGTGAAGCTGAACATCAAAAAGCTACTCTGATGGCTGCTCTAGAAAAGGTATCGGAGATTCGTGCTATAGAATATAAGTTGAGAACACATGTTGGTCCGAAAAGTTTTCGCCGCGGTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTGGGATAGGTAAACCCGGTGAGAGTCCCCCTGCTCTGTGTGGTGCAACAGGACCATCACCAGATATTCCCGCTGATCCTGGTGATCATGTTGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD180224             [                                                                                                                                                                                                                                                                                                                                                    TTTTCGCCGCGGTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGGATAGGTAAACCCGGTGAGAGTCCCCCTGCTCTGTGTGGTGCAACAGGACCATCACCAGATATTCCCGCTGATCCTGGTGATCATGTTGCTGCCCTTGTCCCAGAACCAGACGTGGCAGCTGCTGCTTGTAATTTATCTGAAGGTTGTATATTGGCTGAGGTTGTTTCGTATAATTCTGATAAAGAAATCTATGAGGTAGAAGATGTTGATGCCGAAGAAGGAAAGATGCGTTACTCTCTATCCTGTTCTAAAGTTATACCTTTACCAAAATGGAAAGCCAATCCGATTACAAATCCTGAGGCAATATTCAATAAAGGTTCTACTGTTTTGGCTCTTTATCCACAAACAACATGTTTCTACAAAGCAATTGTG                                                                                                                                                                                                                                                                       ]
[+] EMBL CD158696             [                                                                                                                                                                                                                                                                                                                                              gagcggcTTTCGCCGCGGTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGGATAGGTAAACCCGGTGAGAGTCCCCCTGCTCTGTGTGGTGCAACAGGACCATCACCAGATATTCCCGCTGATCCTGGTGATCATGTTGCTGCCCTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL AI395586             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATATTCAATAAA GTTCTACTGTTTTGGCTCTTTATCCACAAACAACATGTTTNTACAAAGCAATTGTGGATGAAATTCCAACTCATATACATGATGAGTATTCCCTTTATTTTGAGGATTCATCCTACCCTGAAGGTTATGCTCCAGCTATTAAAATACCACAACGATATGTTATTCAATGTCCTGACAAAGAAGCAATGACGAGTAAACATTTAGACAGGTCAAAAAAACGTGGTAAAAAACTATGAAGTTATTACTTATAATCTTAACTTCTTCCATCTTGCAGTTGTGTAAATATAACTAGTTTCTTTGTTGAAAAAAAAAAAAAAAA]




>consensus_9079#0
TTCGGGCCAAAAATTCGGCACGAGGGCTGTCAATATGNGCTTTTACGACAAGTATGATTC
CGGAACAAGCTCAAGTTAAAGATCGTGCTGATGAACTTCTATCTTTATGTAAAAAAGCAG
TTGCTGACTGCAATAACGTGAAAACAACACTTGATTCACTTGACAAGTTACGTTGTAAAC
AACGTTGTTCCAAAGTTGTCAAAAGTCAATTGAAGTCCCTATACACACAGGCAATTAGTG
AAGCTGAACATCAAAAAGCTACTCTTATGGCTGCTCTAGAAAAGGTATCGGAGATTCGTG
CTATAGAATATAAGTTGAGAACACATGTTGGTCCGAAAAGTTTTCGCCGCGGTGTACTAA
TGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGGATAGGTAAACCCGGTGAGA
GTCCCCCTGCTCTGTGTGGTGCAACAGGACCATCACCAGATATTCCCGCTGATCCTGGTG
ATCATGTTGCTGCCCTTGTCCCAGAACCAGACGTGGCAGCTGCTGCTTGTAATTTATCTG
AAGGTTGTATATTGGCTGAGGTTGTTTCGTATAATTCTGATAAAGAAATCTATGAGGTAG
AAGATGTTGATGCCGAAGAAGGAAAGATGCGTTACTCTCTATCCTGTTCTAAAGTTATAC
CTTTACCAAAATGGAAAGCCAATCCGATTACAAATCCTGAGGCAATATTCAATAAAGGTT
CTACTGTTTTGGCTCTTTATCCACAAACAACATGTTTCTACAAAGCAATTGTGGATGAAA
TTCCAACTCATATACATGATGAGTATTCCCTTTATTTTGAGGATTCATCCTACCCTGAAG
GTTATGCTCCAGCTATTAAAATACCACAACGATATGTTATTCAATGTCCTGACAAAGAAG
CAATGACGAGTAAACATTTAGACAGGTCAAAAAAACGTGGTAAAAAACTATGAAGTTATT
ACTTATAATCTTAACTTCTTCCATCTTGCAGTTGTGTAAATATAACTAGTTTCTTTGTTG
AAAAAAAAAAAAAAAA

consensusID : consensus_9079#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [TTAGTATTCCAAGGTCAGTTCCGAATTTAGTTCAGAAAACAAAATGGATCCAACACTTTGAACTTTTGATAATTATTTATACACCTGTCAATATGGCTTTTACGACAAGTATGATTCCGGAACAAGCTCAAGTTAAAGATCGTGCTGATGAACTTCTATCTTTATGCTGACTGCAATAACGTGAAAACAACACTTGATTCACTTGACAAGTTACGTTGTAAACAACGTTGTTCCAAAGGTTAGTTAGTAGGTTATGGCAGTAATACTGACAATTAAAGTTGTCAAAAGTCAATTGAAGTCCCTATACACACAGGCAATTAGTGAAGCTGAACATCAAAAAGCTACTCTTATGGCTGCTCTAGAAAAGGTATCGGAGATTCGTGCTATAGAATATAAGTTGAGAACACATGTTGGTCCGAAAAGTTTTCGCCGCGGTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGG]

[-] EMBL CD133024             [TTAGTATTCCAAGGTCAGTTCCGAATTTAGTTCAGAAAACAAAATGGATCCAACACTTTGAACTTTTGATAATTATTTATACACCTGTCAATATGGCTTTTACGACAAGTATGATTCCGGAACAAGCTCAAGTTAAAGATCGTGCTGATGAACTTCTATCTTTATGCTGACTGCAATAACGTGAAAACAACACTTGATTCACTTGACAAGTTACGTTGTAAACAACGTTGTTCCAAAGGTTAGTTAGTAGGTTATGGCAGTAATACTGACAATTAAAGTTGTCAAAAGTCAATTGAAGTCCCTATACACACAGGCAATTAGTGAAGCTGAACATCAAAAAGCTACTCTTATGGCTGCTCTAGAAAAGGTATCGGAGATTCGTGCTATAGAATATAAGTTGAGAACACATGTTGGTCCGAAAAGTTTTCGCCGCGGTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGG]




>consensus_9079#1
TTAGTATTCCAAGGTCAGTTCCGAATTTAGTTCAGAAAACAAAATGGATCCAACACTTTG
AACTTTTGATAATTATTTATACACCTGTCAATATGGCTTTTACGACAAGTATGATTCCGG
AACAAGCTCAAGTTAAAGATCGTGCTGATGAACTTCTATCTTTATGCTGACTGCAATAAC
GTGAAAACAACACTTGATTCACTTGACAAGTTACGTTGTAAACAACGTTGTTCCAAAGGT
TAGTTAGTAGGTTATGGCAGTAATACTGACAATTAAAGTTGTCAAAAGTCAATTGAAGTC
CCTATACACACAGGCAATTAGTGAAGCTGAACATCAAAAAGCTACTCTTATGGCTGCTCT
AGAAAAGGTATCGGAGATTCGTGCTATAGAATATAAGTTGAGAACACATGTTGGTCCGAA
AAGTTTTCGCCGCGGTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACT
TTGG

consensusID : consensus_9079#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [GCATAATTTTTAGTCAAGGCGTTACTCTCTATCCTGTTCTAAAGTTATACCTTTACCAAAATGGAAAGCCAATCCGATTACAAATCCTGAGGCAATATTCAATAAAGGTTTTACTGTTTTGGCTCTTTATCCACAAACAACATGTTTTTACAAAGCAATTGTGGATGAAATTCCAACTCATATACATGATGAGTATTCCCTTTATTTTGAGGATTCATCCTACCCTGAAGGTTATGCTCCAGCTATTAAAATACCACAACGATATGTTATTCAATGTCCTGACAAAGAAGCAATGACGAGTAAACATTTAGACAGGTCAAAAAAACGTGGTAAAAAACTATGAAGTTATTACTTATAATCTTAACTTCTTCCATCTTGCAGTTGTGTAAATATAACTAGTT]

[-] EMBL CD076468             [GCATAATTTTTAGTCAAGGCGTTACTCTCTATCCTGTTCTAAAGTTATACCTTTACCAAAATGGAAAGCCAATCCGATTACAAATCCTGAGGCAATATTCAATAAAGGTTTTACTGTTTTGGCTCTTTATCCACAAACAACATGTTTTTACAAAGCAATTGTGGATGAAATTCCAACTCATATACATGATGAGTATTCCCTTTATTTTGAGGATTCATCCTACCCTGAAGGTTATGCTCCAGCTATTAAAATACCACAACGATATGTTATTCAATGTCCTGACAAAGAAGCAATGACGAGTAAACATTTAGACAGGTCAAAAAAACGTGGTAAAAAACTATGAAGTTATTACTTATAATCTTAACTTCTTCCATCTTGCAGTTGTGTAAATATAACTAGTT]




>consensus_9079#2
GCATAATTTTTAGTCAAGGCGTTACTCTCTATCCTGTTCTAAAGTTATACCTTTACCAAA
ATGGAAAGCCAATCCGATTACAAATCCTGAGGCAATATTCAATAAAGGTTTTACTGTTTT
GGCTCTTTATCCACAAACAACATGTTTTTACAAAGCAATTGTGGATGAAATTCCAACTCA
TATACATGATGAGTATTCCCTTTATTTTGAGGATTCATCCTACCCTGAAGGTTATGCTCC
AGCTATTAAAATACCACAACGATATGTTATTCAATGTCCTGACAAAGAAGCAATGACGAG
TAAACATTTAGACAGGTCAAAAAAACGTGGTAAAAAACTATGAAGTTATTACTTATAATC
TTAACTTCTTCCATCTTGCAGTTGTGTAAATATAACTAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9079#0      TTCGGGCCAAAAATTCGGCACGAGGGCTGTCAATATGNGCTTTTACGACAAGTATGATTC 60
consensus_9079#2      ------------------------------------------------------------
consensus_9079#1      ------------------------------------------------------------
                                                                                  

consensus_9079#0      CGGAACAAGCTCAAGTTAAAGATCGTGCTGATGAACTTCTATCTTTATGTAAAAAAGCAG 120
consensus_9079#2      ------------------------------------------------------------
consensus_9079#1      ------------------------------------------------------------
                                                                                  

consensus_9079#0      TTGCTGACTGCAATAACGTGAAAACAACACTTGATTCACTTGACAAGTTACGTTGTAAAC 180
consensus_9079#2      ------------------------------------------------------------
consensus_9079#1      ------------------------------------------------------------
                                                                                  

consensus_9079#0      AACGTTGTTCCAAAGTTGTCAAAAGTCAATTGAAGTCCCTATACACACAGGCAATTAGTG 240
consensus_9079#2      ------------------------------------------------------------
consensus_9079#1      ------------------------------------------------------------
                                                                                  

consensus_9079#0      AAGCTGAACATCAAAAAGCTACTCTTATGGCTGCTCTAGAAAAGGTATCGGAGATTCGTG 300
consensus_9079#2      ------------------------------------------------------------
consensus_9079#1      ------------------------------------------------------------
                                                                                  

consensus_9079#0      CTATAGAATATAAGTTGAGAACACATGTTGGTCCGAAAAGTTTTCGCCGCGGTGTACTAA 360
consensus_9079#2      ------------------------------------------------------------
consensus_9079#1      ------------------------------------------------------------
                                                                                  

consensus_9079#0      TGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGGATAGGTAAACCCGGTGAGA 420
consensus_9079#2      ------------------------------------------------------------
consensus_9079#1      ------------------------------------------------------------
                                                                                  

consensus_9079#0      GTCCCCCTGCTCTGTGTGGTGCAACAGGACCATCACCAGATATTCCCGCTGATCCTGGTG 480
consensus_9079#2      ------------------------------------------------------------
consensus_9079#1      ------------------------------------------------------------
                                                                                  

consensus_9079#0      ATCATGTTGCTGCCCTTGTCCCAGAACCAGACGTGGCAGCTGCTGCTTGTAATTTATCTG 540
consensus_9079#2      ------------------------------------------------------------
consensus_9079#1      ------------------------------------------------------------
                                                                                  

consensus_9079#0      AAGGTTGTATATTGGCTGAGGTTGTTTCGTATAATTCTGATAAAGAAATCTATGAGGTAG 600
consensus_9079#2      ------------------------------------------------------------
consensus_9079#1      ----------------------------------------TTAGTATTCCAAGGTCAGTT 20
                                                                                  

consensus_9079#0      AAGATGTTGATGCCGAAGAAGGAAA-GATGCGTTACTCTCTA-TCCTGTTCTAAAGTTAT 658
consensus_9079#2      -----------GCATAATTTTTAGTCAAGGCGTTACTCTCTA-TCCTGTTCTAAAGTTAT 48
consensus_9079#1      CCGAATTTAGTTCAGAAAACAAAATGGATCCAACACTTTGAACTTTTGATAATTATTTAT 80
                                  *  **     *    *  *   *** *  * *  ** *    * ****

consensus_9079#0      ACCTTTACCAAAATGGAAAGCCAATCCGATTACAAATCCTGAGGCAATATTCAATAAAGG 718
consensus_9079#2      ACCTTTACCAAAATGGAAAGCCAATCCGATTACAAATCCTGAGGCAATATTCAATAAAGG 108
consensus_9079#1      ACACCTGTCAATATGGCTT-TTACGACAAGTATGATTCCGGAACAAGCTCAAGTTAAAGA 139
                      **   *  *** ****      *   * * **  * *** **   *        ***** 

consensus_9079#0      TTCTACTGTTTTGGCTCTTTATCCACAAACAACATGTTTCTACAAAGCAATTGTGGATGA 778
consensus_9079#2      TTTTACTGTTTTGGCTCTTTATCCACAAACAACATGTTTTTACAAAGCAATTGTGGATGA 168
consensus_9079#1      TCGTGCTGA--TGAACTTCTATCTTTATGCTGACTGCAATAACGTGAAAACAACACTTGA 197
                      *  * ***   **    * ****   *  *    **     **     **       ***

consensus_9079#0      AATTCCAACTCATATACATGATGAGTATTCCCTTTATTTTGAGGATTCATCCTACCCTGA 838
consensus_9079#2      AATTCCAACTCATATACATGATGAGTATTCCCTTTATTTTGAGGATTCATCCTACCCTGA 228
consensus_9079#1      TTCACTTGACAAGTTACGTTGTAAACA---ACGTTGTTCCAAAGGTTAGTTAGTAGGTTA 254
                          *      *  *** *  * *  *    * ** **   * * **  *       * *

consensus_9079#0      AGGTTATGCT-CCAGCTATTAAAAT-ACCACAACGATATGTTATTCAATGTCCTGACAAA 896
consensus_9079#2      AGGTTATGCT-CCAGCTATTAAAAT-ACCACAACGATATGTTATTCAATGTCCTGACAAA 286
consensus_9079#1      TGGCAGTAATACTGACAATTAAAGTTGTCAAAAGTCAATTGAAGTCCCTATACACACAGG 314
                       **   *  * *   * ****** *   ** **    **   * **  * * *  ***  

consensus_9079#0      GAAGCAATGACG------AGTAAACATTTA-------GACAGGTCAAAAAAACGTGGTAA 943
consensus_9079#2      GAAGCAATGACG------AGTAAACATTTA-------GACAGGTCAAAAAAACGTGGTAA 333
consensus_9079#1      CAATTAGTGAAGCTGAACATCAAAAAGCTACTCTTATGGCTGCTCTAGAAAAGGTATCGG 374
                       **  * *** *      *  *** *  **       * * * ** * **** **     

consensus_9079#0      AAAACTATG----AAGTTATTACTTATAATCTTAACTTCTTCCA------TCTTGCAGTT 993
consensus_9079#2      AAAACTATG----AAGTTATTACTTATAATCTTAACTTCTTCCA------TCTTGCAGTT 383
consensus_9079#1      AGATTCGTGCTATAGAATATAAGTTGAGAACACATGTTGGTCCGAAAAGTTTTCGCCGCG 434
                      * *    **    *   *** * **   * *  *  **  ***       * * ** *  

consensus_9079#0      GTGTAAATATAACTAGTTTCTTTGTTGAAAAAAAAAAAAAAAA------- 1036
consensus_9079#2      GTGTAAATATAACTAGTT-------------------------------- 401
consensus_9079#1      GTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGG 484
                      *****   **  *   **