cluster # 908

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Schistosoma mansoni
cluster # 908 cluster # 908 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_908#0 length = 392 sequences # 1

consensus_908#1 length = 387 sequences # 1

consensusID : consensus_908#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence

                              [TTTACTAAATTGTCATCATCATACAGGAGGTATTGTTTATGTACCATGGTGGATTGAAATATTGATTAATACATGGTTAGCAAGTATTCTACGTATTGATCATGATCTAACTGATCCTTCTAATAATAATATGGATGAAAAAAATGAAAAAATTTTAAAAAATTCTAAAGAAAAATTAATACCAAGTGAAAATTCTTATCAAATGGAACAATATGATGATGATGATAATGATGATAAAAGCCATTACATCCAATCGAATTATTCATATAATAATAATACTACTACTACTAACAATACTACTCACAATAATATCAGTAGTAGTATTAGTAGTAATAATGCAAGGAATCCGACAGTTTGGTCAAATATCATTGATATGAATTCAGAATTTCGTC]

[+] EMBL AI976702             [TTTACTAAATTGTCATCATCATACAGGAGGTATTGTTTATGTACCATGGTGGATTGAAATATTGATTAATACATGGTTAGCAAGTATTCTACGTATTGATCATGATCTAACTGATCCTTCTAATAATAATATGGATGAAAAAAATGAAAAAATTTTAAAAAATTCTAAAGAAAAATTAATACCAAGTGAAAATTCTTATCAAATGGAACAATATGATGATGATGATAATGATGATAAAAGCCATTACATCCAATCGAATTATTCATATAATAATAATACTACTACTACTAACAATACTACTCACAATAATATCAGTAGTAGTATTAGTAGTAATAATGCAAGGAATCCGACAGTTTGGTCAAATATCATTGATATGAATTCAGAATTTCGTC]




>consensus_908#0
TTTACTAAATTGTCATCATCATACAGGAGGTATTGTTTATGTACCATGGTGGATTGAAAT
ATTGATTAATACATGGTTAGCAAGTATTCTACGTATTGATCATGATCTAACTGATCCTTC
TAATAATAATATGGATGAAAAAAATGAAAAAATTTTAAAAAATTCTAAAGAAAAATTAAT
ACCAAGTGAAAATTCTTATCAAATGGAACAATATGATGATGATGATAATGATGATAAAAG
CCATTACATCCAATCGAATTATTCATATAATAATAATACTACTACTACTAACAATACTAC
TCACAATAATATCAGTAGTAGTATTAGTAGTAATAATGCAAGGAATCCGACAGTTTGGTC
AAATATCATTGATATGAATTCAGAATTTCGTC

consensusID : consensus_908#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence

                              [TGGCTAAACTTAGGCGAGAACTTATTGAACCTAAAGGTGGTACTGGCGGAGGGGGAGAAGGATTACATGGTTAGCAAGTATTCTACGTATTGATCATGATCTAACTGATCCTTCTAATAATAATATGGATGAAAAAAATGAAAAAATTTTAAAAAATTCTAAAGAAAAATTAATACCAAGTGAAAATTCTTATCAAATGGAACAATATGATGATGATGATAATGATGATAAAAGCCATTACATCCAATCGAATTATTCATATAATAATAATACTACTACTACTAACAATACTACTCACAATAATATCAGTAGTAGTATTAGTAGTAATAATGCAAGGAATCCGACAGTTTGGTCAAATATCATTGATATGAATTCAGAATTTCGTCC]

[+] EMBL AI976704             [TGGCTAAACTTAGGCGAGAACTTATTGAACCTAAAGGTGGTACTGGCGGAGGGGGAGAAGGATTACATGGTTAGCAAGTATTCTACGTATTGATCATGATCTAACTGATCCTTCTAATAATAATATGGATGAAAAAAATGAAAAAATTTTAAAAAATTCTAAAGAAAAATTAATACCAAGTGAAAATTCTTATCAAATGGAACAATATGATGATGATGATAATGATGATAAAAGCCATTACATCCAATCGAATTATTCATATAATAATAATACTACTACTACTAACAATACTACTCACAATAATATCAGTAGTAGTATTAGTAGTAATAATGCAAGGAATCCGACAGTTTGGTCAAATATCATTGATATGAATTCAGAATTTCGTCC]




>consensus_908#1
TGGCTAAACTTAGGCGAGAACTTATTGAACCTAAAGGTGGTACTGGCGGAGGGGGAGAAG
GATTACATGGTTAGCAAGTATTCTACGTATTGATCATGATCTAACTGATCCTTCTAATAA
TAATATGGATGAAAAAAATGAAAAAATTTTAAAAAATTCTAAAGAAAAATTAATACCAAG
TGAAAATTCTTATCAAATGGAACAATATGATGATGATGATAATGATGATAAAAGCCATTA
CATCCAATCGAATTATTCATATAATAATAATACTACTACTACTAACAATACTACTCACAA
TAATATCAGTAGTAGTATTAGTAGTAATAATGCAAGGAATCCGACAGTTTGGTCAAATAT
CATTGATATGAATTCAGAATTTCGTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_908#0      TTTACTAAATT--GTCATCATCATACAGGAGGTATTGTTTATGTACCATGGTGGATTGAA 58
consensus_908#1      -TGGCTAAACTTAGGCGAGAACTTATTGAACCTAAAGGTGGTAC----TGGCGGAGGGGG 55
                      *  ***** *  * *   * * **  * *  **  * *  *      *** ***  *  

consensus_908#0      ATATTGATTAATACATGGTTAGCAAGTATTCTACGTATTGATCATGATCTAACTGATCCT 118
consensus_908#1      AGAAGGATT---ACATGGTTAGCAAGTATTCTACGTATTGATCATGATCTAACTGATCCT 112
                     * *  ****   ************************************************

consensus_908#0      TCTAATAATAATATGGATGAAAAAAATGAAAAAATTTTAAAAAATTCTAAAGAAAAATTA 178
consensus_908#1      TCTAATAATAATATGGATGAAAAAAATGAAAAAATTTTAAAAAATTCTAAAGAAAAATTA 172
                     ************************************************************

consensus_908#0      ATACCAAGTGAAAATTCTTATCAAATGGAACAATATGATGATGATGATAATGATGATAAA 238
consensus_908#1      ATACCAAGTGAAAATTCTTATCAAATGGAACAATATGATGATGATGATAATGATGATAAA 232
                     ************************************************************

consensus_908#0      AGCCATTACATCCAATCGAATTATTCATATAATAATAATACTACTACTACTAACAATACT 298
consensus_908#1      AGCCATTACATCCAATCGAATTATTCATATAATAATAATACTACTACTACTAACAATACT 292
                     ************************************************************

consensus_908#0      ACTCACAATAATATCAGTAGTAGTATTAGTAGTAATAATGCAAGGAATCCGACAGTTTGG 358
consensus_908#1      ACTCACAATAATATCAGTAGTAGTATTAGTAGTAATAATGCAAGGAATCCGACAGTTTGG 352
                     ************************************************************

consensus_908#0      TCAAATATCATTGATATGAATTCAGAATTTCGTC- 392
consensus_908#1      TCAAATATCATTGATATGAATTCAGAATTTCGTCC 387
                     **********************************