These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9081#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1256 fasta sequence [TATGGGACAGATTCTTCAACAGACAATTTCAGAATGATACAACACAACTTGCCAGAATTCAAATAATCTCGCCAGTTCTCTGGTAGATACTTCGTTCCCATGATTGAAAAGTGCCCTATCCTATCTCATCAGATTGAAATTTATGATTTAAAATCAGTTATTGTTATTAGTTCATATGACAATAATGATAATTCACATCATAGTAATAAAAACCTTAATTCTTGTTTTGAGCTAAGTTGGGATGAAGTCAACAAAATTCTTGGACAGTCGAAAATCAATATGTTTTTCCCTAATACTCAGTTATCAACACTTGTTAGTTTGCTTCGCGAAAGTTATGCTATAGAAACAAAATATCTATTAGAAAAAATCAGTAGAACTGTTCAAGAGCTTTCAGTTGCTGAAGATCTATATATCAAATCACAAACCAAGAAGTGTTTGTTAATATTTCCATGTTACAGCAAGAAACGTATAGATAAAGAA-TTGTATATTGTGATGAATAGCGTAAAAAATAAGGTTTTCGATCTAAAACATGAAGTCATAACTCATAACAGACGATGGCGTTGCATTTCAGCGGCTTTACATAACTCATGTAGTGGTTTTGTTGGTTGCAACAGTGTTAATTATATTTCAACCAGTTCTGACTCATCCAAAACAACCTTCGAATATAAAAAGTCAGAAAATCCTGAACAAGTTCACGCATTTTTGAAAGATACTTATGACAATAAAAATGAAAGTCATCAGAAGTTGGATAATTTCACTACCGAATTTTCCGAAAGCTCTGCTGTTTATAGAAGTGTCAAGAATACTCGAACAACTGAGTTGCTGGATTCTGTGTTCATATGATCTCGTCACGTGTCTGATTCGAATTTTCCATCAAATATAAAAATCTTGGTGACAATAACTATATTGAGTAACACAGTGTTGAACTTGACCACTTAAATTCCTAGTGATTTCAACTAAAAATTCGAAAACAAATGACAACGAACTGTCCTGCTATTTAATGACGACAGCGGCCTTTATCCTCTGAGCTTATTTTATAGTAATGATTGTTTAATTACACATCAATAACACTTTTTTCTGTTTAACTGAATTTATTACAGTCAAAGTAATCTTGTGATGTTTGAATGAATCAATGACTTCTTGGTATTGATGAGTGTTTTGATTTTAAATTCCAAATACAATACATTCGTTTGTGCTCAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA] [-] EMBL CD194377 [TATGGGACAGATTCTTCAACAGACAATTTCAGAATGATACAACACAACTTGCCAGAATTCAAATAATCTCGCCAGTTCTCTGGTAGATACTTCGTTCCCATGATTGAAAAGTGCCCTATCCTATCTCATCAGATTGAAATTTATGATTTAAAATCAGTTATTGTTATTAGTTCATATGACAATAATGATAATTCACATCATAGTAATAAAAACCTTAATTCTTGTTTTGAGCTAAGTTGGGATGAAGTCAACAAAATTCTTGGACAGTCGAAAATCAATATGTTTTTCCCTAATACTC ] [-] EMBL CD166773 [ ATTCTTCAACAGACAATTTCAGAATGATACAACACAACTTGCCAGAATTCAAATAATCTCGCCAGTTCTCTGGTAGATATTTCGTTCCCATGATTGAAAAGTGCCCTATCCTATCTCATCAGATTGAAATTTATGATTTAAAATCAGTTATTGTTATTAGTTCATATGACAATAATGATAATTCACATCATAGTAATAAAAACCTTAATTCTTGTTTTGAGCTAAGTTGGGGTGAAGTCAACAAAATTCTTGGACAGTCGAAAATCAATATGTTTTTCCCTAATACTCAGTTATCAACACTTGTTAGTTTGCTTCGCGAAAGTTATGCTATAGAAACAAAATATCTATTAGAAAAAATCAGTAGAACTGTTCAAGAGCTTTCAGTTGCTGAAGATCTACA AGAAACGTATAGATAAAGAATTGTATATTgtgatg ] [+] EMBL CD083179 [ ATCAGATTGAAATTTATGATTTAAAATCAGTTATTGTTATTAGTTCATATGACAATAATGATAATTCACATCATAGTAATAAAAACCTTAATTCTTGTTTTGAGCTAAGTTGGGATGAAGTCAACAAAATTCTTGGACAGTCGAAAATCAATATGTTTTTCCCTAATACTCAGTTATCAACACTTGTTAGTTTGCTTCGCGAAAGTTATGCTATAGAAACAAAATATCTATTAGAAAAAATCAGTAGAACTGTTCAAGAGCTTTCAGTTGCTGAAGATCTATATATCAAATCACAAACCAAGAAGTGTTTGTTAATATTTCCATGTTACAGCAAGAAACGTATAGATAAAGAA TTGTATATTGTGATGAATAGCGTAAAAAATAAGGTTTTCGATCTAAAACATGAAGTCATAACTCATAACAGACGATGGCGTTGCATTTCAGCGGCTTTACATAACTCATGTAGTGGTTTTGTTGGTTGCAACAGTGTTAATTATATTTCAACCAGTTCTGACTCATCCAAAACAACCTTCGAATATAAAAAGTCAGAAAATCCTGAACAAGTTCACGCATTTTTGAAAGATACTTATGANCATAAAAATGAAAGTCATCAGAAGTTGGATAATTTCACTACCGAATTTTCCGAAAGCTCTGCTn ] [-] EMBL CD166624 [ GAGCTTTCAGTTGCTGAAGATCTATATATCAAATCACAAACCAAGAAGTGTTTGTTAATATTTCCATGTTACAGCAAGAAACGTATAGAT AAGAANTTGTAT ] [-] EMBL CD076754 [ TTGCAACAGTGTTAATTATATTTCAACCAGTTCTGACTCATCCAAAACAACCTTCGAATATAAAAAGTCAGAAAATCCTGAACAAGTTCACGCATTTTTGAAAGATACTTATGACAATAAAAATGAAAGTCATCAGAAGTTGGATAATTTCACTACCGAATTTTCCGAAAGCTCTGCTGTTTATAGAAGTGTCAAGAATACTCGAACAACTGAGTTGCTGGATTCTGTGTTCATATGATCTCGTCACGTGTCTGATTCGAATTTTCCATCAAATATAAAAATCTTGGTGACAATAACTATATTGAGTAACACAGTGTTGAACTTGACCACTTAAATTCCTAGTGATTTCAACTAAAAATTCGAAAACAAATGACAACGAACTGTCCTGCTATTTAATGACGACAGCGGCCTTTATCCTCTGAGCTTATTTTATAGTAATGATTGTTTAATTACACATCAATAACACTTTTTTCTGTTTAACTGAATTTATTACAGTCAAAGTAATCTTGTGATGTTTGAATGAATCAATGACTTCTTGGTATTGATGAGTGTTTTGATTTTAAATTCCAAATACAATACATTCGTTTG ] [-] EMBL AW017045 [ CCTGAACAAGTTCACGCATTTTTGAAAGATACTTATGCCAATAAAAATGAAAGTCATCAGAAGTTGGATAATTTCACTACCGAATTTTCCGAAAGCTCTGCTGTTTATAGAAGTGTCAAGAATACTCGAACAATTGAGTTGCTGGATTCTGTGTTCATATGATCTCGTCACGTGTCTGATTCGAATTTTCCATCAAATATAAAAATCTTGGTGACAATAACTATATTGAGTAACACAGTGTTGAACTTGACCACTTAAATTCCTAGTGATTTCAACTAAAAATTCGAAAACAAATGACAACGAACTGTCCTGCTATTTAATGACGACAGCGGCCTTTATCCTCTGAGCTTATTTTATAGTAATGATTGTTTAATTACACATCAATAACACTTTTTTCTGTTTAACTGAATTTATTACAGTCAAAGTAATCTTGTAATGTTTGAATGAATCAATGACTTCTTGGTATTGATGAGTGTTTTGATTTTAAATTCCAAATACAATACATTCGTTTGTGCTCAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA] [-] EMBL CD074566 [ ATGATCTCGTCACGTGTCTGATTCGAATTTTCCATCAAATATAAAAATCTTGGTGACAATAACTATATTGAGTAACACAGTGTTGAACTTGACCACTTAAATTCCTAGTGATTTCAACTAAAAATTCGAAAACAAATGACAACGAACTGTCCTGCTATTTAATGACGACAGCGGCCTTTATCCTCTGAGCTTATTTTATAGTAATGATTGTTTAATTACACATCAATAACACTTTTTTCTGTTTAACTGAATTTATTACAGTCAAAGTAATCTTGTGATGTTTGAATGAATCAATGACTTCTTGGTATTGATGAGTGTTTTGATTTTAAATTCCAAAAACAATACATTCG ] consensusID : consensus_9081#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 808 fasta sequence [CCTCGGGCCAANAATTCGGCACGAGGAGAGCTTTCAGTTGCTGAAGATCTATATATCAAATCACAAACCAAGAAGTGTTTGTTAATATTTCCATGTTACAGCAAGAAACGTATAGATAAAGAATTGTATATTGTGATGAATAGCGTAAAAAATAAGGTTTTCGATCTAAAACATGAAGTCATAACTCATAACAGACGATGGCGTTGCATTTCAGCGGCTTTACATAACTCATGTAGTGGTTTTGTTGGTTGCAACAGTGTTAATTATATTTCAACCAGTTCTGACTCATCCAAAACAACCTTCGAATATAAAAAGTCAGAAAATCCTGAACAAGTTCACGCATTTTTGAAAGATACTTATGACAATAAAAATGAAAGTCATCAGAAGTTGGATAATTTCACTACCGAATTTTCCGAAAGCTCTGCTGTTTATAGAAGTGTCAAGAATACTCGAACCACTGANGTGCTGGATTTCTGTGTCATATGATCTCGTCACGTGTCTGATTCGAATTTTCATCANATATAAAAATCTTGGTGACCATAACTATATTGAGTAACACAGTGGTNGAACTTGACCACTTAAAATCCTAGTGATTCCACTAAAAATTCGAAACCAATGACAACGAACTGTCCTGCTATTAATGACGACAGCGGCCTTTATCCTTGGAGCTAATTTATAGAAAGGATGGTTAATTCCCCTTCAATACCCTTTTTTCTGTTACCCGAATTATTCCGGCAAGGAATCTTGGGAGGTTAAAGAACACAGCCTTTTGATTTGGAGAAGGTTGAGTTTAATTCCAAACACAACC] [+] EMBL CD080652 [CCTCGGGCCAANAATTCGGCACGAGGAGAGCTTTCAGTTGCTGAAGATCTATATATCAAATCACAAACCAAGAAGTGTTTGTTAATATTTCCATGTTACAGCAAGAAACGTATAGATAAAGAATTGTATATTGTGATGAATAGCGTAAAAAATAAGGTTTTCGATCTAAAACATGAAGTCATAACTCATAACAGACGATGGCGTTGCATTTCAGCGGCTTTACATAACTCATGTAGTGGTTTTGTTGGTTGCAACAGTGTTAATTATATTTCAACCAGTTCTGACTCATCCAAAACAACCTTCGAATATAAAAAGTCAGAAAATCCTGAACAAGTTCACGCATTTTTGAAAGATACTTATGACAATAAAAATGAAAGTCATCAGAAGTTGGATAATTTCACTACCGAATTTTCCGAAAGCTCTGCTGTTTATAGAAGTGTCAAGAATACTCGAACCACTGANGTGCTGGATTTCTGTGTCATATGATCTCGTCACGTGTCTGATTCGAATTTTCATCANATATAAAAATCTTGGTGACCATAACTATATTGAGTAACACAGTGGTNGAACTTGACCACTTAAAATCCTAGTGATTCCACTAAAAATTCGAAACCAATGACAACGAACTGTCCTGCTATTAATGACGACAGCGGCCTTTATCCTTGGAGCTAATTTATAGAAAGGATGGTTAATTCCCCTTCAATACCCTTTTTTCTGTTACCCGAATTATTCCGGCAAGGAATCTTGGGAGGTTAAAGAACACAGCCTTTTGATTTGGAGAAGGTTGAGTTTAATTCCAAACACAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9081#0 TATGGGACAGATTCTTCAACAGACAATTTCAGAATGATACAACACAACTTGCCAGAATTC 60 consensus_9081#1 ------------------------------------------------------------ consensus_9081#0 AAATAATCTCGCCAGTTCTCTGGTAGATACTTCGTTCCCATGATTGAAAAGTGCCCTATC 120 consensus_9081#1 ------------------------------------------------------------ consensus_9081#0 CTATCTCATCAGATTGAAATTTATGATTTAAAATCAGTTATTGTTATTAGTTCATATGAC 180 consensus_9081#1 ------------------------------------------------------------ consensus_9081#0 AATAATGATAATTCACATCATAGTAATAAAAACCTTAATTCTTGTTTTGAGCTAAGTTGG 240 consensus_9081#1 ------------------------------------------------------------ consensus_9081#0 GATGAAGTCAACAAAATTCTTGGACAGTCGAAAATCAATATGTTTTTCCCTAATACTCAG 300 consensus_9081#1 ------------------------------------------------------------ consensus_9081#0 TTATCAACACTTGTTAGTTTGCTTCGCGAAAGTTATGCTATAGAAACAAAATATCTATTA 360 consensus_9081#1 ----------------------------------------------------CCTCGGGC 8 consensus_9081#0 GAAAAAATCAGTAGAACTGTTCAAGAGCTTTCAGTTGCTGAAGATCTATATATCAAATCA 420 consensus_9081#1 CAANAATTCGGCACGAG-----GAGAGCTTTCAGTTGCTGAAGATCTATATATCAAATCA 63 ** ** ** * * * ************************************* consensus_9081#0 CAAACCAAGAAGTGTTTGTTAATATTTCCATGTTACAGCAAGAAACGTATAGATAAAGAA 480 consensus_9081#1 CAAACCAAGAAGTGTTTGTTAATATTTCCATGTTACAGCAAGAAACGTATAGATAAAGAA 123 ************************************************************ consensus_9081#0 TTGTATATTGTGATGAATAGCGTAAAAAATAAGGTTTTCGATCTAAAACATGAAGTCATA 540 consensus_9081#1 TTGTATATTGTGATGAATAGCGTAAAAAATAAGGTTTTCGATCTAAAACATGAAGTCATA 183 ************************************************************ consensus_9081#0 ACTCATAACAGACGATGGCGTTGCATTTCAGCGGCTTTACATAACTCATGTAGTGGTTTT 600 consensus_9081#1 ACTCATAACAGACGATGGCGTTGCATTTCAGCGGCTTTACATAACTCATGTAGTGGTTTT 243 ************************************************************ consensus_9081#0 GTTGGTTGCAACAGTGTTAATTATATTTCAACCAGTTCTGACTCATCCAAAACAACCTTC 660 consensus_9081#1 GTTGGTTGCAACAGTGTTAATTATATTTCAACCAGTTCTGACTCATCCAAAACAACCTTC 303 ************************************************************ consensus_9081#0 GAATATAAAAAGTCAGAAAATCCTGAACAAGTTCACGCATTTTTGAAAGATACTTATGAC 720 consensus_9081#1 GAATATAAAAAGTCAGAAAATCCTGAACAAGTTCACGCATTTTTGAAAGATACTTATGAC 363 ************************************************************ consensus_9081#0 AATAAAAATGAAAGTCATCAGAAGTTGGATAATTTCACTACCGAATTTTCCGAAAGCTCT 780 consensus_9081#1 AATAAAAATGAAAGTCATCAGAAGTTGGATAATTTCACTACCGAATTTTCCGAAAGCTCT 423 ************************************************************ consensus_9081#0 GCTGTTTATAGAAGTGTCAAGAATACTCGAACAACTGAGTTGCTGGATT-CTGTGTTCAT 839 consensus_9081#1 GCTGTTTATAGAAGTGTCAAGAATACTCGAACCACTGANGTGCTGGATTTCTGTGT-CAT 482 ******************************** ***** ********* ****** *** consensus_9081#0 ATGATCTCGTCACGTGTCTGATTCGAATTTTCCATCAAATATAAAAATCTTGGTGACAAT 899 consensus_9081#1 ATGATCTCGTCACGTGTCTGATTCGAATTTTC-ATCANATATAAAAATCTTGGTGACCAT 541 ******************************** **** ******************* ** consensus_9081#0 AACTATATTGAGTAACACAGTG-TTGAACTTGACCACTTAAATTCCTAGTGATTTCAACT 958 consensus_9081#1 AACTATATTGAGTAACACAGTGGTNGAACTTGACCACTTAAAATCCTAGTGATTCCA-CT 600 ********************** * ***************** *********** ** ** consensus_9081#0 AAAAATTCGAAAACAAATGACAACGAACTGTCCTGCTATTTAATGACGACAGCGGCCTTT 1018 consensus_9081#1 AAAAATTCGAAA-CCAATGACAACGAACTGTCCTGCTATT-AATGACGACAGCGGCCTTT 658 ************ * ************************* ******************* consensus_9081#0 ATCCTCTGAGCTTATTTTATAGTAATGATTGTTTAATTACACATCAATAACACTTTTTTC 1078 consensus_9081#1 ATCCTTGGAGCTAATTT-ATAGAAAGGATGGTT-AATTCCCCTTCAATACC-CTTTTTTC 715 ***** ***** **** **** ** *** *** **** * * ****** * ******** consensus_9081#0 TGTTTAACTGAATTTATTACAGTCAAAGTAATCTTGTGATGTTTGAATGAATCAATGACT 1138 consensus_9081#1 TGTT--ACCCGAATTATTCCGGC--AAGGAATCTTGGGAGGTT--AAAGAAC--ACAGCC 767 **** ** * ***** * * *** ******* ** *** ** *** * * consensus_9081#0 TCTTGGTATTGATGAGTGTTTTGATTTTAAATTCCAAATACAATACATTCGTTTGTGCTC 1198 consensus_9081#1 TTTTGATTTGGAGAAG---GTTGAGTTTAA-TTCCAAACACAACC--------------- 808 * *** * * ** ** **** ***** ******* **** consensus_9081#0 AAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA 1256 consensus_9081#1 ---------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||