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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9081#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1256 fasta sequence
[TATGGGACAGATTCTTCAACAGACAATTTCAGAATGATACAACACAACTTGCCAGAATTCAAATAATCTCGCCAGTTCTCTGGTAGATACTTCGTTCCCATGATTGAAAAGTGCCCTATCCTATCTCATCAGATTGAAATTTATGATTTAAAATCAGTTATTGTTATTAGTTCATATGACAATAATGATAATTCACATCATAGTAATAAAAACCTTAATTCTTGTTTTGAGCTAAGTTGGGATGAAGTCAACAAAATTCTTGGACAGTCGAAAATCAATATGTTTTTCCCTAATACTCAGTTATCAACACTTGTTAGTTTGCTTCGCGAAAGTTATGCTATAGAAACAAAATATCTATTAGAAAAAATCAGTAGAACTGTTCAAGAGCTTTCAGTTGCTGAAGATCTATATATCAAATCACAAACCAAGAAGTGTTTGTTAATATTTCCATGTTACAGCAAGAAACGTATAGATAAAGAA-TTGTATATTGTGATGAATAGCGTAAAAAATAAGGTTTTCGATCTAAAACATGAAGTCATAACTCATAACAGACGATGGCGTTGCATTTCAGCGGCTTTACATAACTCATGTAGTGGTTTTGTTGGTTGCAACAGTGTTAATTATATTTCAACCAGTTCTGACTCATCCAAAACAACCTTCGAATATAAAAAGTCAGAAAATCCTGAACAAGTTCACGCATTTTTGAAAGATACTTATGACAATAAAAATGAAAGTCATCAGAAGTTGGATAATTTCACTACCGAATTTTCCGAAAGCTCTGCTGTTTATAGAAGTGTCAAGAATACTCGAACAACTGAGTTGCTGGATTCTGTGTTCATATGATCTCGTCACGTGTCTGATTCGAATTTTCCATCAAATATAAAAATCTTGGTGACAATAACTATATTGAGTAACACAGTGTTGAACTTGACCACTTAAATTCCTAGTGATTTCAACTAAAAATTCGAAAACAAATGACAACGAACTGTCCTGCTATTTAATGACGACAGCGGCCTTTATCCTCTGAGCTTATTTTATAGTAATGATTGTTTAATTACACATCAATAACACTTTTTTCTGTTTAACTGAATTTATTACAGTCAAAGTAATCTTGTGATGTTTGAATGAATCAATGACTTCTTGGTATTGATGAGTGTTTTGATTTTAAATTCCAAATACAATACATTCGTTTGTGCTCAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]
[-] EMBL CD194377 [TATGGGACAGATTCTTCAACAGACAATTTCAGAATGATACAACACAACTTGCCAGAATTCAAATAATCTCGCCAGTTCTCTGGTAGATACTTCGTTCCCATGATTGAAAAGTGCCCTATCCTATCTCATCAGATTGAAATTTATGATTTAAAATCAGTTATTGTTATTAGTTCATATGACAATAATGATAATTCACATCATAGTAATAAAAACCTTAATTCTTGTTTTGAGCTAAGTTGGGATGAAGTCAACAAAATTCTTGGACAGTCGAAAATCAATATGTTTTTCCCTAATACTC ]
[-] EMBL CD166773 [ ATTCTTCAACAGACAATTTCAGAATGATACAACACAACTTGCCAGAATTCAAATAATCTCGCCAGTTCTCTGGTAGATATTTCGTTCCCATGATTGAAAAGTGCCCTATCCTATCTCATCAGATTGAAATTTATGATTTAAAATCAGTTATTGTTATTAGTTCATATGACAATAATGATAATTCACATCATAGTAATAAAAACCTTAATTCTTGTTTTGAGCTAAGTTGGGGTGAAGTCAACAAAATTCTTGGACAGTCGAAAATCAATATGTTTTTCCCTAATACTCAGTTATCAACACTTGTTAGTTTGCTTCGCGAAAGTTATGCTATAGAAACAAAATATCTATTAGAAAAAATCAGTAGAACTGTTCAAGAGCTTTCAGTTGCTGAAGATCTACA AGAAACGTATAGATAAAGAATTGTATATTgtgatg ]
[+] EMBL CD083179 [ ATCAGATTGAAATTTATGATTTAAAATCAGTTATTGTTATTAGTTCATATGACAATAATGATAATTCACATCATAGTAATAAAAACCTTAATTCTTGTTTTGAGCTAAGTTGGGATGAAGTCAACAAAATTCTTGGACAGTCGAAAATCAATATGTTTTTCCCTAATACTCAGTTATCAACACTTGTTAGTTTGCTTCGCGAAAGTTATGCTATAGAAACAAAATATCTATTAGAAAAAATCAGTAGAACTGTTCAAGAGCTTTCAGTTGCTGAAGATCTATATATCAAATCACAAACCAAGAAGTGTTTGTTAATATTTCCATGTTACAGCAAGAAACGTATAGATAAAGAA TTGTATATTGTGATGAATAGCGTAAAAAATAAGGTTTTCGATCTAAAACATGAAGTCATAACTCATAACAGACGATGGCGTTGCATTTCAGCGGCTTTACATAACTCATGTAGTGGTTTTGTTGGTTGCAACAGTGTTAATTATATTTCAACCAGTTCTGACTCATCCAAAACAACCTTCGAATATAAAAAGTCAGAAAATCCTGAACAAGTTCACGCATTTTTGAAAGATACTTATGANCATAAAAATGAAAGTCATCAGAAGTTGGATAATTTCACTACCGAATTTTCCGAAAGCTCTGCTn ]
[-] EMBL CD166624 [ GAGCTTTCAGTTGCTGAAGATCTATATATCAAATCACAAACCAAGAAGTGTTTGTTAATATTTCCATGTTACAGCAAGAAACGTATAGAT AAGAANTTGTAT ]
[-] EMBL CD076754 [ TTGCAACAGTGTTAATTATATTTCAACCAGTTCTGACTCATCCAAAACAACCTTCGAATATAAAAAGTCAGAAAATCCTGAACAAGTTCACGCATTTTTGAAAGATACTTATGACAATAAAAATGAAAGTCATCAGAAGTTGGATAATTTCACTACCGAATTTTCCGAAAGCTCTGCTGTTTATAGAAGTGTCAAGAATACTCGAACAACTGAGTTGCTGGATTCTGTGTTCATATGATCTCGTCACGTGTCTGATTCGAATTTTCCATCAAATATAAAAATCTTGGTGACAATAACTATATTGAGTAACACAGTGTTGAACTTGACCACTTAAATTCCTAGTGATTTCAACTAAAAATTCGAAAACAAATGACAACGAACTGTCCTGCTATTTAATGACGACAGCGGCCTTTATCCTCTGAGCTTATTTTATAGTAATGATTGTTTAATTACACATCAATAACACTTTTTTCTGTTTAACTGAATTTATTACAGTCAAAGTAATCTTGTGATGTTTGAATGAATCAATGACTTCTTGGTATTGATGAGTGTTTTGATTTTAAATTCCAAATACAATACATTCGTTTG ]
[-] EMBL AW017045 [ CCTGAACAAGTTCACGCATTTTTGAAAGATACTTATGCCAATAAAAATGAAAGTCATCAGAAGTTGGATAATTTCACTACCGAATTTTCCGAAAGCTCTGCTGTTTATAGAAGTGTCAAGAATACTCGAACAATTGAGTTGCTGGATTCTGTGTTCATATGATCTCGTCACGTGTCTGATTCGAATTTTCCATCAAATATAAAAATCTTGGTGACAATAACTATATTGAGTAACACAGTGTTGAACTTGACCACTTAAATTCCTAGTGATTTCAACTAAAAATTCGAAAACAAATGACAACGAACTGTCCTGCTATTTAATGACGACAGCGGCCTTTATCCTCTGAGCTTATTTTATAGTAATGATTGTTTAATTACACATCAATAACACTTTTTTCTGTTTAACTGAATTTATTACAGTCAAAGTAATCTTGTAATGTTTGAATGAATCAATGACTTCTTGGTATTGATGAGTGTTTTGATTTTAAATTCCAAATACAATACATTCGTTTGTGCTCAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]
[-] EMBL CD074566 [ ATGATCTCGTCACGTGTCTGATTCGAATTTTCCATCAAATATAAAAATCTTGGTGACAATAACTATATTGAGTAACACAGTGTTGAACTTGACCACTTAAATTCCTAGTGATTTCAACTAAAAATTCGAAAACAAATGACAACGAACTGTCCTGCTATTTAATGACGACAGCGGCCTTTATCCTCTGAGCTTATTTTATAGTAATGATTGTTTAATTACACATCAATAACACTTTTTTCTGTTTAACTGAATTTATTACAGTCAAAGTAATCTTGTGATGTTTGAATGAATCAATGACTTCTTGGTATTGATGAGTGTTTTGATTTTAAATTCCAAAAACAATACATTCG ]
consensusID : consensus_9081#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 808 fasta sequence
[CCTCGGGCCAANAATTCGGCACGAGGAGAGCTTTCAGTTGCTGAAGATCTATATATCAAATCACAAACCAAGAAGTGTTTGTTAATATTTCCATGTTACAGCAAGAAACGTATAGATAAAGAATTGTATATTGTGATGAATAGCGTAAAAAATAAGGTTTTCGATCTAAAACATGAAGTCATAACTCATAACAGACGATGGCGTTGCATTTCAGCGGCTTTACATAACTCATGTAGTGGTTTTGTTGGTTGCAACAGTGTTAATTATATTTCAACCAGTTCTGACTCATCCAAAACAACCTTCGAATATAAAAAGTCAGAAAATCCTGAACAAGTTCACGCATTTTTGAAAGATACTTATGACAATAAAAATGAAAGTCATCAGAAGTTGGATAATTTCACTACCGAATTTTCCGAAAGCTCTGCTGTTTATAGAAGTGTCAAGAATACTCGAACCACTGANGTGCTGGATTTCTGTGTCATATGATCTCGTCACGTGTCTGATTCGAATTTTCATCANATATAAAAATCTTGGTGACCATAACTATATTGAGTAACACAGTGGTNGAACTTGACCACTTAAAATCCTAGTGATTCCACTAAAAATTCGAAACCAATGACAACGAACTGTCCTGCTATTAATGACGACAGCGGCCTTTATCCTTGGAGCTAATTTATAGAAAGGATGGTTAATTCCCCTTCAATACCCTTTTTTCTGTTACCCGAATTATTCCGGCAAGGAATCTTGGGAGGTTAAAGAACACAGCCTTTTGATTTGGAGAAGGTTGAGTTTAATTCCAAACACAACC]
[+] EMBL CD080652 [CCTCGGGCCAANAATTCGGCACGAGGAGAGCTTTCAGTTGCTGAAGATCTATATATCAAATCACAAACCAAGAAGTGTTTGTTAATATTTCCATGTTACAGCAAGAAACGTATAGATAAAGAATTGTATATTGTGATGAATAGCGTAAAAAATAAGGTTTTCGATCTAAAACATGAAGTCATAACTCATAACAGACGATGGCGTTGCATTTCAGCGGCTTTACATAACTCATGTAGTGGTTTTGTTGGTTGCAACAGTGTTAATTATATTTCAACCAGTTCTGACTCATCCAAAACAACCTTCGAATATAAAAAGTCAGAAAATCCTGAACAAGTTCACGCATTTTTGAAAGATACTTATGACAATAAAAATGAAAGTCATCAGAAGTTGGATAATTTCACTACCGAATTTTCCGAAAGCTCTGCTGTTTATAGAAGTGTCAAGAATACTCGAACCACTGANGTGCTGGATTTCTGTGTCATATGATCTCGTCACGTGTCTGATTCGAATTTTCATCANATATAAAAATCTTGGTGACCATAACTATATTGAGTAACACAGTGGTNGAACTTGACCACTTAAAATCCTAGTGATTCCACTAAAAATTCGAAACCAATGACAACGAACTGTCCTGCTATTAATGACGACAGCGGCCTTTATCCTTGGAGCTAATTTATAGAAAGGATGGTTAATTCCCCTTCAATACCCTTTTTTCTGTTACCCGAATTATTCCGGCAAGGAATCTTGGGAGGTTAAAGAACACAGCCTTTTGATTTGGAGAAGGTTGAGTTTAATTCCAAACACAACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9081#0 TATGGGACAGATTCTTCAACAGACAATTTCAGAATGATACAACACAACTTGCCAGAATTC 60
consensus_9081#1 ------------------------------------------------------------
consensus_9081#0 AAATAATCTCGCCAGTTCTCTGGTAGATACTTCGTTCCCATGATTGAAAAGTGCCCTATC 120
consensus_9081#1 ------------------------------------------------------------
consensus_9081#0 CTATCTCATCAGATTGAAATTTATGATTTAAAATCAGTTATTGTTATTAGTTCATATGAC 180
consensus_9081#1 ------------------------------------------------------------
consensus_9081#0 AATAATGATAATTCACATCATAGTAATAAAAACCTTAATTCTTGTTTTGAGCTAAGTTGG 240
consensus_9081#1 ------------------------------------------------------------
consensus_9081#0 GATGAAGTCAACAAAATTCTTGGACAGTCGAAAATCAATATGTTTTTCCCTAATACTCAG 300
consensus_9081#1 ------------------------------------------------------------
consensus_9081#0 TTATCAACACTTGTTAGTTTGCTTCGCGAAAGTTATGCTATAGAAACAAAATATCTATTA 360
consensus_9081#1 ----------------------------------------------------CCTCGGGC 8
consensus_9081#0 GAAAAAATCAGTAGAACTGTTCAAGAGCTTTCAGTTGCTGAAGATCTATATATCAAATCA 420
consensus_9081#1 CAANAATTCGGCACGAG-----GAGAGCTTTCAGTTGCTGAAGATCTATATATCAAATCA 63
** ** ** * * * *************************************
consensus_9081#0 CAAACCAAGAAGTGTTTGTTAATATTTCCATGTTACAGCAAGAAACGTATAGATAAAGAA 480
consensus_9081#1 CAAACCAAGAAGTGTTTGTTAATATTTCCATGTTACAGCAAGAAACGTATAGATAAAGAA 123
************************************************************
consensus_9081#0 TTGTATATTGTGATGAATAGCGTAAAAAATAAGGTTTTCGATCTAAAACATGAAGTCATA 540
consensus_9081#1 TTGTATATTGTGATGAATAGCGTAAAAAATAAGGTTTTCGATCTAAAACATGAAGTCATA 183
************************************************************
consensus_9081#0 ACTCATAACAGACGATGGCGTTGCATTTCAGCGGCTTTACATAACTCATGTAGTGGTTTT 600
consensus_9081#1 ACTCATAACAGACGATGGCGTTGCATTTCAGCGGCTTTACATAACTCATGTAGTGGTTTT 243
************************************************************
consensus_9081#0 GTTGGTTGCAACAGTGTTAATTATATTTCAACCAGTTCTGACTCATCCAAAACAACCTTC 660
consensus_9081#1 GTTGGTTGCAACAGTGTTAATTATATTTCAACCAGTTCTGACTCATCCAAAACAACCTTC 303
************************************************************
consensus_9081#0 GAATATAAAAAGTCAGAAAATCCTGAACAAGTTCACGCATTTTTGAAAGATACTTATGAC 720
consensus_9081#1 GAATATAAAAAGTCAGAAAATCCTGAACAAGTTCACGCATTTTTGAAAGATACTTATGAC 363
************************************************************
consensus_9081#0 AATAAAAATGAAAGTCATCAGAAGTTGGATAATTTCACTACCGAATTTTCCGAAAGCTCT 780
consensus_9081#1 AATAAAAATGAAAGTCATCAGAAGTTGGATAATTTCACTACCGAATTTTCCGAAAGCTCT 423
************************************************************
consensus_9081#0 GCTGTTTATAGAAGTGTCAAGAATACTCGAACAACTGAGTTGCTGGATT-CTGTGTTCAT 839
consensus_9081#1 GCTGTTTATAGAAGTGTCAAGAATACTCGAACCACTGANGTGCTGGATTTCTGTGT-CAT 482
******************************** ***** ********* ****** ***
consensus_9081#0 ATGATCTCGTCACGTGTCTGATTCGAATTTTCCATCAAATATAAAAATCTTGGTGACAAT 899
consensus_9081#1 ATGATCTCGTCACGTGTCTGATTCGAATTTTC-ATCANATATAAAAATCTTGGTGACCAT 541
******************************** **** ******************* **
consensus_9081#0 AACTATATTGAGTAACACAGTG-TTGAACTTGACCACTTAAATTCCTAGTGATTTCAACT 958
consensus_9081#1 AACTATATTGAGTAACACAGTGGTNGAACTTGACCACTTAAAATCCTAGTGATTCCA-CT 600
********************** * ***************** *********** ** **
consensus_9081#0 AAAAATTCGAAAACAAATGACAACGAACTGTCCTGCTATTTAATGACGACAGCGGCCTTT 1018
consensus_9081#1 AAAAATTCGAAA-CCAATGACAACGAACTGTCCTGCTATT-AATGACGACAGCGGCCTTT 658
************ * ************************* *******************
consensus_9081#0 ATCCTCTGAGCTTATTTTATAGTAATGATTGTTTAATTACACATCAATAACACTTTTTTC 1078
consensus_9081#1 ATCCTTGGAGCTAATTT-ATAGAAAGGATGGTT-AATTCCCCTTCAATACC-CTTTTTTC 715
***** ***** **** **** ** *** *** **** * * ****** * ********
consensus_9081#0 TGTTTAACTGAATTTATTACAGTCAAAGTAATCTTGTGATGTTTGAATGAATCAATGACT 1138
consensus_9081#1 TGTT--ACCCGAATTATTCCGGC--AAGGAATCTTGGGAGGTT--AAAGAAC--ACAGCC 767
**** ** * ***** * * *** ******* ** *** ** *** * *
consensus_9081#0 TCTTGGTATTGATGAGTGTTTTGATTTTAAATTCCAAATACAATACATTCGTTTGTGCTC 1198
consensus_9081#1 TTTTGATTTGGAGAAG---GTTGAGTTTAA-TTCCAAACACAACC--------------- 808
* *** * * ** ** **** ***** ******* ****
consensus_9081#0 AAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA 1256
consensus_9081#1 ----------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||