These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9083#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 936 fasta sequence [TACTAAAAATCGTTTTATGTACAAACAGAAAGGTCCTTGAACATTAATGAACAGGAGAGACATAAGTCCTTCTCAATAACTCCAGGAACTGTTTTTTCACTAAAAGAATCAGGGTTAGATAAAGAGGAAGAATGTATCATAGATTCCGTAGCCAACCTATCAGGATCATTAGAAGAGTCAGTATTGGATATAGGAAAATGACAGAAACGACATGTAATTTTAGAGTCATTTTCCAACACAATTTTCGAAGATGTTCTAAGAATAGTTCCAGTAGTTGATGGGAATCCACCAGCTTGTAATCCAGATAAGAAATCTTGAGTTAATCTTTCCAATGTATTGACATTAGGATTTTTAAGCACAATCGATGTTAATGGATCATTGGGTGTAACATACTCCAAATGTATAAAATGAGCGAATAAAGCTATTTCTTTCGCCAGAAAATCACGTAATGGTCTAACAATTGTTATATCTTGGTATCGTTCATCTAAAAATGATGTTTGTAGACTACTATAATTTCCACGACCTTCTATTATTTCTAATAAATATTTCACTGTCATTCTATTACTACAATCACCCATCATTAAATATTTACAATTCAGTTTTTTTGTACATTTAATCAAT-AATTTAATCGANTATAATCATGATAACGTTGTTTATTACTAAGTGATGAAGAAGTCAATTGACTGGTCCATTTCTCATTTACTTCTGTAATTTCATCCAACGTGATATTATAATATTCCAAACCAGTATTCTTCATTATTTTTGTAATTAATTCTAAATTGGCTTGTGAATCTGATGATTCAACAAGATGGAATACCTTTGGCACATTGTTTGGATTTCGTTTCATTATTCCATTATTATCATTATCGTTCAGTATTAATTTTAATAAAGTTGATGAATTTTGACCACCTGAATAAGGTTCCTCGTGCCGAATTN] [+] EMBL CD074401 [TACTAAAAATCGTTTTATGTACAAACAGAAAGGTCCTTGAACATTAATGAACAGGAGAGACATAAGTCCTTCTCAATAACTCCAGGAACTGTTTTTTCACTAAAAGAATCAGGGTTAGATAAAGAGGAAGAATGTATCATAGATTCCGTAGCCAACCTATCAGGATCATTAGAAGAGTCAGTATTGGATATAGGAAAATGACAGAAACGACATGTAATTTTAGAGTCATTTTCCAACACAATTTTCGAAGATGTTCTAAGAATAGTTCCAGTAGTTGATGGGAATCCACCAGCTTGTAATCCAGATAAGAAATCTTGAGTTAATCTTTCCAATGTATTGACATTAGGATTTTTAAGCACAATCGATGTTAATGGATCATTGGGTGTAACATACTCCAAATGTATAAAATGAGCGAATAAAGCTATTTCTTTCGCCAGAAAATCACGTAATGGTCTAACAATTGTTATATCTTGGTATCGTTCATCTAAAAATGATGTTTGTAGACTACTATAATTTCCACGACCTTCTATTATTTCTAATAAATATTTCACTGTCATTCTATTACTACAATCACCCATCATTAAATATTTACAATTCAGTTTTTTTGTACATTTAATCAAT AATTTAATCGANTATA ] [-] EMBL CD185942 [ AAAAATCGTTTTATGTACAAACAGAAAGGTCCTTGAACGTTAATGAACAGGAGAGACATAAGTCCTTCTCAATAACTCCAGGAACTGTTTTTTCACTAAAAGAATCAGGGTTAGATAAAGAGGAAGAATGTATCATAGATTCCGTAGCCAACCTATCAGGATCATTAGAAGAGTCAGTATTGGATATAGGAAAATGACAGAAACGACATGTAATTTTAGAGTCATTTTCCAACACAATTTTCGAAGATGTTCTAAGAATAGTTCCAGTAGTTGATGGGAATCCACCAGCTTGTAATCCAGATAAGAAATCTTGAGTTAATCTTTCCAATGTATTGACATTAGGATTTTTAAGCACAATCGATGTTAATGGATCATTGGGTGTAACATACTCCAAATGTATAAAATGAGCGAATAAAGCT ] [-] EMBL CD197663 [ ACAGAAACGACAGGTAATTTAAGAGTCATTTTCCAACACAATTTTCGAAGATGTTCTAAGAATAGTTCCAGTAGTTGATGGGAATCCACCAGCTTGTAATCCAGATAAGAAATCTTGAGTTAATCTTTCCAATGTATTGACATTAGGATTTTTAAGCACAATCGATGTTAATGGATCATTGGGTGTAACATACTCCAAATGTATAAAATGAGCGAATAAAGCTATTTCTTTCGCCAGAAAATCACGTAATGGTCTAACAATTGTTATATCTTGGTATCGTTCATCTAAAAATGATGTTTGTAGACTACTATAATTTCCACGACCTTCTATTATTTCTAATAA ] [-] EMBL CD083145 [ CACAATCGATGTTAATGGATCATTGGGTGTAACATACTCCAAATGTATANAATGAGCGAATANAGCTATTTCTTTCGCCAGAAAATCACGTAATGGTCTAACAATTGTTATATCTTGGTATCGTTCATCTAAAAATGATGTTTGTAGACTACTATAATTTCCACGACCTTCTATTATTTCTAATAAATATTTCACTGTCATTCTATTACTACAATCACCCATCATTAAATATTTACAATTCAGTTTTTTTGTACATTTAATCAATAAATTTAATCGATAATAATCATGATAACGTTGTTTATTACTAAGTGATGAAGAAGTCAATTGACTGGTCCATTTCTCATTTACTTCTGTAATTTCATCCAACGTGATATTATAATATTCCAAACCAGTATTCTTCATTATTTTTGTAATTAATTCTAAATTGGCTTGTGAATCTGATGATTCAACAAGATGGAATACCTTTGGCACATTGTTTGGATTTCGTTTCATTATTCCATTATTATCATTATCGTTCAGTATTAATTTTAATAAAGTTGATGAATTTTGACCACCTGAATAAGGTTCCTCGTGCCGAATTN] consensusID : consensus_9083#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 683 fasta sequence [GTATATTTTCTAATAAATATTTCACTGTCATTCTATTACTACAATCACCCATCATTAAATATTTACAATTCAGTTTTTTTGTACATTTAATCAATAAATTTAATCGATAATAATCATGATAACGTTGTTTATTACTAAGTGATGAAGAAGTCAATTGACTGGTCCATTTCTCATTTACTTCTGTAATTTCATCCAACGTGATATTATAATATTCCAAACCAGTATTCTTCATTATTTTTGTAATTAATTCTAAATTGGCTTGTGAATCTGATGATTCAACAAGATGGAATACCTTTGGCACATTGTTTGGATTTCGTTTCATTATTCCATTATTATCATTATCCTTCAGTATTAATTTTAATAAAGTTGATGAATTTTGACCACCTGAATAAGCTATAGCCATATTATTAATGATAGAATTTAATTTATATTTTCCAAATATTGTATTTATTTTATGATAACATTGATTAATAAAACATGATTTGCATAATGATGGATCATCTTTTCTAATTAATACAGCTGGTGGAGATTGACATTTAATACAATGTGATATCCTTTCTTTCTTTTTAGAAATTGAAGTGAATAAACAAGAACAATCTTCTTCTTGATCCTCCATTAGATTATGATTGTTATTGTTATCTCATCTCTTATGCAGGAAGACCCAGGTCAAATCGGCCTCCATG] [-] EMBL CD080489 [GTATATTTTCTAATAAATATTTCACTGTCATTCTATTACTACAATCACCCATCATTAAATATTTACAATTCAGTTTTTTTGTACATTTAATCAATAAATTTAATCGATAATAATCATGATAACGTTGTTTATTACTAAGTGATGAAGAAGTCAATTGACTGGTCCATTTCTCATTTACTTCTGTAATTTCATCCAACGTGATATTATAATATTCCAAACCAGTATTCTTCATTATTTTTGTAATTAATTCTAAATTGGCTTGTGAATCTGATGATTCAACAAGATGGAATACCTTTGGCACATTGTTTGGATTTCGTTTCATTATTCCATTATTATCATTATCCTTCAGTATTAATTTTAATAAAGTTGATGAATTTTGACCACCTGAATAAGCTATAGCCATATTATTAATGATAGAATTTAATTTATATTTTCCAAATATTGTATTTATTTTATGATAACATTGATTAATAAAACATGATTTGCATAATGATGGATCATCTTTTCTAATTAATACAGCTGGTGGAGATTGACATTTAATACAATGTGATATCCTTTCTTTCTTTTTAGAAATTGAAGTGAATAAACAAGAACAATCTTCTTCTTGATCCTC ] [+] EMBL CD195947 [ ATTTACAATTCAGTTTTTTTGTACATTTAATCAATAAATTTAATCGATAATAATCATGATAACGTTGTTTATTACTAAGTGATGAAGAAGTCAATTGACTGGGCCATTTCTCATTTACTTCTGTAATTTCATCCAACGTGATATTATAATATTCCAAACCAGTATTCTTCATTATTTTTGTAATTAATTCTAAATTGGCTTGTGAATCTGATGATTCAt ] [-] EMBL CD083043 [ ATCAATAAATTTAATCGATAATAATCATGATAACGNTGTTTATTACTAAGTGATGAAGAAGTCAATTGACTGGTCCATTTCTCATTTACTTCTGTAATTTCATCCAACGTGATATTATAATATTCCAAACCAGTATTCTTCATTATTTTTGTAATTAATTCTAAATTGGCTTGTGAATCTGATGATTCAACAAGATGGAATACCTTTGGCACATTGTTTGGATTTCGTTTCATTATTCCATTATTATCATTATCCTTCAGTATTAATTTTAATAAAGTTGATGAATTTTGACCACCTGAATAAGCTATAGCCATATTATTAATGATAGAATTTAATTTATATTTTCCAAATATTGTATTTATTTTATGATAACATTGATTAATAAAACATGATTTGCATAATGATGGATCATCTTTTCTAATTAATACAGCTGGTGGAGATTGACATTTAATACAATGTGATATCCTTTCTTTCTTTTTAGAAATTGAAGTGAATAAACAAGAACAATCTTGTTCTTGATTACACATTAGATTATGATTGTTATTGTTATCTCATCTCTTATGCAGGAAGACCCAGGTCAAATCGGCCTCCATG] consensusID : consensus_9083#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [AAATCGTTTTATGTACAAACAGAAAGGTCCTTGAACATTAATGAACAGGAGAGACATAAGTCCTTCTCAATAACTCCAGGAACTGTTTTTTCACTAAAAGAATCAGGGTTAGATAAAGAGGAAGAATGTATCATAGATTCCGTAGCCAACCTATCAGGATCATTAGAAGAGTCAGTATTGGATATAGGAAACTAAAATGGAAAAAAAAACTTAAATCCTCTAAAAATACATCAACGATTGACAAGTTACAGGAATTAAAGAACAAATACAAAATAATATATTGAATATGGTACAATAAGGTTTTAGGTGAACTAACACGAACATGACCTAGTGCTATCAACCATTTTTAAGTCACTTAAAGCGTTCACTTTAAGTATTTCGGTGAGCGAAGTAACAACATAGTGTAAGATAAGAAGGCCAAATTAGTTGTCGGATATCTGATCAACAAATCACCTACCCCTTTAGTCAATGATCTCAAATAGGATTTTTTTAAATCACATAAGTTCACCGATGACATTTTTATTGACGTTGAGTAGTACG] [-] EMBL CD080548 [AAATCGTTTTATGTACAAACAGAAAGGTCCTTGAACATTAATGAACAGGAGAGACATAAGTCCTTCTCAATAACTCCAGGAACTGTTTTTTCACTAAAAGAATCAGGGTTAGATAAAGAGGAAGAATGTATCATAGATTCCGTAGCCAACCTATCAGGATCATTAGAAGAGTCAGTATTGGATATAGGAAACTAAAATGGAAAAAAAAACTTAAATCCTCTAAAAATACATCAACGATTGACAAGTTACAGGAATTAAAGAACAAATACAAAATAATATATTGAATATGGTACAATAAGGTTTTAGGTGAACTAACACGAACATGACCTAGTGCTATCAACCATTTTTAAGTCACTTAAAGCGTTCACTTTAAGTATTTCGGTGAGCGAAGTAACAACATAGTGTAAGATAAGAAGGCCAAATTAGTTGTCGGATATCTGATCAACAAATCACCTACCCCTTTAGTCAATGATCTCAAATAGGATTTTTTTAAATCACATAAGTTCACCGATGACATTTTTATTGACGTTGAGTAGTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9083#0 TACTAAAAATCGTTTTATGTACAAACAGAAAGGTCCTTGAACATTAATGAACAGGAGAGA 60 consensus_9083#1 ------------------------------------------------------------ consensus_9083#2 ------------------------------------------------------------ consensus_9083#0 CATAAGTCCTTCTCAATAACTCCAGGAACTGTTTTTTCACTAAAAGAATCAGGGTTAGAT 120 consensus_9083#1 ------------------------------------------------------------ consensus_9083#2 ------------------------------------------------------------ consensus_9083#0 AAAGAGGAAGAATGTATCATAGATTCCGTAGCCAACCTATCAGGATCATTAGAAGAGTCA 180 consensus_9083#1 ------------------------------------------------------------ consensus_9083#2 ------------------------------------------------------------ consensus_9083#0 GTATTGGATATAGGAAAATGACAGAAACGACATGTAATTTTAGAGTCATTTTCCAACACA 240 consensus_9083#1 ------------------------------------------------------------ consensus_9083#2 ------------------------------------------------------------ consensus_9083#0 ATTTTCGAAGATGTTCTAAGAATAGTTCCAGTAGTTGATGGGAATCCACCAGCTTGTAAT 300 consensus_9083#1 ------------------------------------------------------------ consensus_9083#2 ------------------------------------------------------------ consensus_9083#0 CCAGATAAGAAATCTTGAGTTAATCTTTCCAATGTATTGACATTAGGATTTTTAAGCACA 360 consensus_9083#1 ------------------------------------------------------------ consensus_9083#2 ------------------------------------------------------------ consensus_9083#0 ATCGATGTTAATGGATCATTGGGTGTAACATACTCCAAATGTATAAAATGAGCGAATAAA 420 consensus_9083#1 ------------------------------------------------------------ consensus_9083#2 ------------------------------------------------------------ consensus_9083#0 GCTATTTCTTTCGCCAGAAAATCACGTAATGGTCTAACAATTGTTATATCTTGGTATCGT 480 consensus_9083#1 ------------------------------------------------------------ consensus_9083#2 ------------------------------------------------------------ consensus_9083#0 TCATCTAAAAATGATGTTTGTAGACTACTATAATTTCCACGACCTTCTATTATTTCTAAT 540 consensus_9083#1 ----------------------------------------------GTATATTTTCTAAT 14 consensus_9083#2 ------------------------------------------------------------ consensus_9083#0 AAATATTTCACTGTCATTCTATTACTACAATCACCCATCATTAAATATTTACAATTCAGT 600 consensus_9083#1 AAATATTTCACTGTCATTCTATTACTACAATCACCCATCATTAAATATTTACAATTCAGT 74 consensus_9083#2 AAATCGTTTTATGTACAAACAGAAAGGTCCTTGAACATTAATGAACAGGAGAGACATAAG 60 **** ** *** * * * *** * * ** * * * consensus_9083#0 TTTTTTGTACATTTAATCAATAA-TTTAATCGANTATAATCATGATAACGTTGTTTATTA 659 consensus_9083#1 TTTTTTGTACATTTAATCAATAAATTTAATCGATAATAATCATGATAACGTTGTTTATTA 134 consensus_9083#2 TCCTTC--TCAATAACTCCAGGAACTGTTTTTTCACTAAAAGAATCAGGGTTAGATAAAG 118 * ** ** * * ** * * * * *** * *** ** consensus_9083#0 CTAAGTGATGAAGAAGTCAATTGACTGGTCCATTTCTCATTTACTTCTGTAATTTCATCC 719 consensus_9083#1 CTAAGTGATGAAGAAGTCAATTGACTGGTCCATTTCTCATTTACTTCTGTAATTTCATCC 194 consensus_9083#2 AGGAAGAATGTATCA-TAGATTCCGTAGCCAACCTATCAGGATCATTAGAAGAGTCAGTA 177 * *** * * * *** * * * * * *** * * * * *** consensus_9083#0 AACGTGATATTATAATATTCCAAACCAGTATTCTTCATTATTTTTGTAATTAATTCTAAA 779 consensus_9083#1 AACGTGATATTATAATATTCCAAACCAGTATTCTTCATTATTTTTGTAATTAATTCTAAA 254 consensus_9083#2 TTGGATATAGGAAACTAAAATGGAAAAAAAAACTTAAATCCTCTAAAAATACATCAACGA 237 * *** * * ** * * * *** * * * * *** ** * consensus_9083#0 TTGGCTTGTGAATCTGATGATTCAACAAG-ATGGAATACCTT-TGGCACATTGTTTGGAT 837 consensus_9083#1 TTGGCTTGTGAATCTGATGATTCAACAAG-ATGGAATACCTT-TGGCACATTGTTTGGAT 312 consensus_9083#2 TTGACAAGTTACAGGAATTAAAGAACAAATACAAAATAATATATTGAATATGGTACAATA 297 *** * ** * ** * ***** * **** * * * * ** ** consensus_9083#0 TTCGTTTCATTATTCCATTATTATCATTATCGTTCAGTATTAATTTTAATAAAGTTGATG 897 consensus_9083#1 TTCGTTTCATTATTCCATTATTATCATTATCCTTCAGTATTAATTTTAATAAAGTTGATG 372 consensus_9083#2 AGGTTTTAGGTGAACTAACACGAACATGACCTAGTGCTATCAACCATTTTTAAGTCACTT 357 *** * * * * * *** * * *** ** * * **** * consensus_9083#0 AATTTTGACCACCTGAATAAGGTT---CCTCGTGCCGAATTN------------------ 936 consensus_9083#1 AATTTTGACCACCTGAATAAGCTATAGCCATATTATTAATGATAGAATTTAATTTATATT 432 consensus_9083#2 AAAGC-GTTCACTTTAAGTATTTC-GGTGAGCGAAGTAACAACATAGTGTAAGATAAGAA 415 ** * *** * ** * * ** consensus_9083#0 ------------------------------------------------------------ consensus_9083#1 TTCCAAATATTGTATTTATTTTATGATAACATTGATTAATAAAACATGATTTGCATAATG 492 consensus_9083#2 GGCCAAATTAGTTGTCGGATATCTGATCA-ACAAATCACCTACCCCTTTAGTCAATGATC 474 consensus_9083#0 ------------------------------------------------------------ consensus_9083#1 ATGGATCATCTTTTCTAATTAATACAGCTGGTGGAGATTGACATTTAATACAATGTGATA 552 consensus_9083#2 TCAAATAGGATTTTTTTAA-ATCACATAAGTTCACCGATGACATTTTTATTGACGTTGAG 533 consensus_9083#0 ------------------------------------------------------------ consensus_9083#1 TCCTTTCTTTCTTTTTAGAAATTGAAGTGAATAAACAAGAACAATCTTCTTCTTGATCCT 612 consensus_9083#2 TAGTACG----------------------------------------------------- 540 consensus_9083#0 ------------------------------------------------------------ consensus_9083#1 CCATTAGATTATGATTGTTATTGTTATCTCATCTCTTATGCAGGAAGACCCAGGTCAAAT 672 consensus_9083#2 ------------------------------------------------------------ consensus_9083#0 ----------- consensus_9083#1 CGGCCTCCATG 683 consensus_9083#2 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||