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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9083#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 936 fasta sequence
[TACTAAAAATCGTTTTATGTACAAACAGAAAGGTCCTTGAACATTAATGAACAGGAGAGACATAAGTCCTTCTCAATAACTCCAGGAACTGTTTTTTCACTAAAAGAATCAGGGTTAGATAAAGAGGAAGAATGTATCATAGATTCCGTAGCCAACCTATCAGGATCATTAGAAGAGTCAGTATTGGATATAGGAAAATGACAGAAACGACATGTAATTTTAGAGTCATTTTCCAACACAATTTTCGAAGATGTTCTAAGAATAGTTCCAGTAGTTGATGGGAATCCACCAGCTTGTAATCCAGATAAGAAATCTTGAGTTAATCTTTCCAATGTATTGACATTAGGATTTTTAAGCACAATCGATGTTAATGGATCATTGGGTGTAACATACTCCAAATGTATAAAATGAGCGAATAAAGCTATTTCTTTCGCCAGAAAATCACGTAATGGTCTAACAATTGTTATATCTTGGTATCGTTCATCTAAAAATGATGTTTGTAGACTACTATAATTTCCACGACCTTCTATTATTTCTAATAAATATTTCACTGTCATTCTATTACTACAATCACCCATCATTAAATATTTACAATTCAGTTTTTTTGTACATTTAATCAAT-AATTTAATCGANTATAATCATGATAACGTTGTTTATTACTAAGTGATGAAGAAGTCAATTGACTGGTCCATTTCTCATTTACTTCTGTAATTTCATCCAACGTGATATTATAATATTCCAAACCAGTATTCTTCATTATTTTTGTAATTAATTCTAAATTGGCTTGTGAATCTGATGATTCAACAAGATGGAATACCTTTGGCACATTGTTTGGATTTCGTTTCATTATTCCATTATTATCATTATCGTTCAGTATTAATTTTAATAAAGTTGATGAATTTTGACCACCTGAATAAGGTTCCTCGTGCCGAATTN]
[+] EMBL CD074401 [TACTAAAAATCGTTTTATGTACAAACAGAAAGGTCCTTGAACATTAATGAACAGGAGAGACATAAGTCCTTCTCAATAACTCCAGGAACTGTTTTTTCACTAAAAGAATCAGGGTTAGATAAAGAGGAAGAATGTATCATAGATTCCGTAGCCAACCTATCAGGATCATTAGAAGAGTCAGTATTGGATATAGGAAAATGACAGAAACGACATGTAATTTTAGAGTCATTTTCCAACACAATTTTCGAAGATGTTCTAAGAATAGTTCCAGTAGTTGATGGGAATCCACCAGCTTGTAATCCAGATAAGAAATCTTGAGTTAATCTTTCCAATGTATTGACATTAGGATTTTTAAGCACAATCGATGTTAATGGATCATTGGGTGTAACATACTCCAAATGTATAAAATGAGCGAATAAAGCTATTTCTTTCGCCAGAAAATCACGTAATGGTCTAACAATTGTTATATCTTGGTATCGTTCATCTAAAAATGATGTTTGTAGACTACTATAATTTCCACGACCTTCTATTATTTCTAATAAATATTTCACTGTCATTCTATTACTACAATCACCCATCATTAAATATTTACAATTCAGTTTTTTTGTACATTTAATCAAT AATTTAATCGANTATA ]
[-] EMBL CD185942 [ AAAAATCGTTTTATGTACAAACAGAAAGGTCCTTGAACGTTAATGAACAGGAGAGACATAAGTCCTTCTCAATAACTCCAGGAACTGTTTTTTCACTAAAAGAATCAGGGTTAGATAAAGAGGAAGAATGTATCATAGATTCCGTAGCCAACCTATCAGGATCATTAGAAGAGTCAGTATTGGATATAGGAAAATGACAGAAACGACATGTAATTTTAGAGTCATTTTCCAACACAATTTTCGAAGATGTTCTAAGAATAGTTCCAGTAGTTGATGGGAATCCACCAGCTTGTAATCCAGATAAGAAATCTTGAGTTAATCTTTCCAATGTATTGACATTAGGATTTTTAAGCACAATCGATGTTAATGGATCATTGGGTGTAACATACTCCAAATGTATAAAATGAGCGAATAAAGCT ]
[-] EMBL CD197663 [ ACAGAAACGACAGGTAATTTAAGAGTCATTTTCCAACACAATTTTCGAAGATGTTCTAAGAATAGTTCCAGTAGTTGATGGGAATCCACCAGCTTGTAATCCAGATAAGAAATCTTGAGTTAATCTTTCCAATGTATTGACATTAGGATTTTTAAGCACAATCGATGTTAATGGATCATTGGGTGTAACATACTCCAAATGTATAAAATGAGCGAATAAAGCTATTTCTTTCGCCAGAAAATCACGTAATGGTCTAACAATTGTTATATCTTGGTATCGTTCATCTAAAAATGATGTTTGTAGACTACTATAATTTCCACGACCTTCTATTATTTCTAATAA ]
[-] EMBL CD083145 [ CACAATCGATGTTAATGGATCATTGGGTGTAACATACTCCAAATGTATANAATGAGCGAATANAGCTATTTCTTTCGCCAGAAAATCACGTAATGGTCTAACAATTGTTATATCTTGGTATCGTTCATCTAAAAATGATGTTTGTAGACTACTATAATTTCCACGACCTTCTATTATTTCTAATAAATATTTCACTGTCATTCTATTACTACAATCACCCATCATTAAATATTTACAATTCAGTTTTTTTGTACATTTAATCAATAAATTTAATCGATAATAATCATGATAACGTTGTTTATTACTAAGTGATGAAGAAGTCAATTGACTGGTCCATTTCTCATTTACTTCTGTAATTTCATCCAACGTGATATTATAATATTCCAAACCAGTATTCTTCATTATTTTTGTAATTAATTCTAAATTGGCTTGTGAATCTGATGATTCAACAAGATGGAATACCTTTGGCACATTGTTTGGATTTCGTTTCATTATTCCATTATTATCATTATCGTTCAGTATTAATTTTAATAAAGTTGATGAATTTTGACCACCTGAATAAGGTTCCTCGTGCCGAATTN]
consensusID : consensus_9083#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 683 fasta sequence
[GTATATTTTCTAATAAATATTTCACTGTCATTCTATTACTACAATCACCCATCATTAAATATTTACAATTCAGTTTTTTTGTACATTTAATCAATAAATTTAATCGATAATAATCATGATAACGTTGTTTATTACTAAGTGATGAAGAAGTCAATTGACTGGTCCATTTCTCATTTACTTCTGTAATTTCATCCAACGTGATATTATAATATTCCAAACCAGTATTCTTCATTATTTTTGTAATTAATTCTAAATTGGCTTGTGAATCTGATGATTCAACAAGATGGAATACCTTTGGCACATTGTTTGGATTTCGTTTCATTATTCCATTATTATCATTATCCTTCAGTATTAATTTTAATAAAGTTGATGAATTTTGACCACCTGAATAAGCTATAGCCATATTATTAATGATAGAATTTAATTTATATTTTCCAAATATTGTATTTATTTTATGATAACATTGATTAATAAAACATGATTTGCATAATGATGGATCATCTTTTCTAATTAATACAGCTGGTGGAGATTGACATTTAATACAATGTGATATCCTTTCTTTCTTTTTAGAAATTGAAGTGAATAAACAAGAACAATCTTCTTCTTGATCCTCCATTAGATTATGATTGTTATTGTTATCTCATCTCTTATGCAGGAAGACCCAGGTCAAATCGGCCTCCATG]
[-] EMBL CD080489 [GTATATTTTCTAATAAATATTTCACTGTCATTCTATTACTACAATCACCCATCATTAAATATTTACAATTCAGTTTTTTTGTACATTTAATCAATAAATTTAATCGATAATAATCATGATAACGTTGTTTATTACTAAGTGATGAAGAAGTCAATTGACTGGTCCATTTCTCATTTACTTCTGTAATTTCATCCAACGTGATATTATAATATTCCAAACCAGTATTCTTCATTATTTTTGTAATTAATTCTAAATTGGCTTGTGAATCTGATGATTCAACAAGATGGAATACCTTTGGCACATTGTTTGGATTTCGTTTCATTATTCCATTATTATCATTATCCTTCAGTATTAATTTTAATAAAGTTGATGAATTTTGACCACCTGAATAAGCTATAGCCATATTATTAATGATAGAATTTAATTTATATTTTCCAAATATTGTATTTATTTTATGATAACATTGATTAATAAAACATGATTTGCATAATGATGGATCATCTTTTCTAATTAATACAGCTGGTGGAGATTGACATTTAATACAATGTGATATCCTTTCTTTCTTTTTAGAAATTGAAGTGAATAAACAAGAACAATCTTCTTCTTGATCCTC ]
[+] EMBL CD195947 [ ATTTACAATTCAGTTTTTTTGTACATTTAATCAATAAATTTAATCGATAATAATCATGATAACGTTGTTTATTACTAAGTGATGAAGAAGTCAATTGACTGGGCCATTTCTCATTTACTTCTGTAATTTCATCCAACGTGATATTATAATATTCCAAACCAGTATTCTTCATTATTTTTGTAATTAATTCTAAATTGGCTTGTGAATCTGATGATTCAt ]
[-] EMBL CD083043 [ ATCAATAAATTTAATCGATAATAATCATGATAACGNTGTTTATTACTAAGTGATGAAGAAGTCAATTGACTGGTCCATTTCTCATTTACTTCTGTAATTTCATCCAACGTGATATTATAATATTCCAAACCAGTATTCTTCATTATTTTTGTAATTAATTCTAAATTGGCTTGTGAATCTGATGATTCAACAAGATGGAATACCTTTGGCACATTGTTTGGATTTCGTTTCATTATTCCATTATTATCATTATCCTTCAGTATTAATTTTAATAAAGTTGATGAATTTTGACCACCTGAATAAGCTATAGCCATATTATTAATGATAGAATTTAATTTATATTTTCCAAATATTGTATTTATTTTATGATAACATTGATTAATAAAACATGATTTGCATAATGATGGATCATCTTTTCTAATTAATACAGCTGGTGGAGATTGACATTTAATACAATGTGATATCCTTTCTTTCTTTTTAGAAATTGAAGTGAATAAACAAGAACAATCTTGTTCTTGATTACACATTAGATTATGATTGTTATTGTTATCTCATCTCTTATGCAGGAAGACCCAGGTCAAATCGGCCTCCATG]
consensusID : consensus_9083#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence
[AAATCGTTTTATGTACAAACAGAAAGGTCCTTGAACATTAATGAACAGGAGAGACATAAGTCCTTCTCAATAACTCCAGGAACTGTTTTTTCACTAAAAGAATCAGGGTTAGATAAAGAGGAAGAATGTATCATAGATTCCGTAGCCAACCTATCAGGATCATTAGAAGAGTCAGTATTGGATATAGGAAACTAAAATGGAAAAAAAAACTTAAATCCTCTAAAAATACATCAACGATTGACAAGTTACAGGAATTAAAGAACAAATACAAAATAATATATTGAATATGGTACAATAAGGTTTTAGGTGAACTAACACGAACATGACCTAGTGCTATCAACCATTTTTAAGTCACTTAAAGCGTTCACTTTAAGTATTTCGGTGAGCGAAGTAACAACATAGTGTAAGATAAGAAGGCCAAATTAGTTGTCGGATATCTGATCAACAAATCACCTACCCCTTTAGTCAATGATCTCAAATAGGATTTTTTTAAATCACATAAGTTCACCGATGACATTTTTATTGACGTTGAGTAGTACG]
[-] EMBL CD080548 [AAATCGTTTTATGTACAAACAGAAAGGTCCTTGAACATTAATGAACAGGAGAGACATAAGTCCTTCTCAATAACTCCAGGAACTGTTTTTTCACTAAAAGAATCAGGGTTAGATAAAGAGGAAGAATGTATCATAGATTCCGTAGCCAACCTATCAGGATCATTAGAAGAGTCAGTATTGGATATAGGAAACTAAAATGGAAAAAAAAACTTAAATCCTCTAAAAATACATCAACGATTGACAAGTTACAGGAATTAAAGAACAAATACAAAATAATATATTGAATATGGTACAATAAGGTTTTAGGTGAACTAACACGAACATGACCTAGTGCTATCAACCATTTTTAAGTCACTTAAAGCGTTCACTTTAAGTATTTCGGTGAGCGAAGTAACAACATAGTGTAAGATAAGAAGGCCAAATTAGTTGTCGGATATCTGATCAACAAATCACCTACCCCTTTAGTCAATGATCTCAAATAGGATTTTTTTAAATCACATAAGTTCACCGATGACATTTTTATTGACGTTGAGTAGTACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9083#0 TACTAAAAATCGTTTTATGTACAAACAGAAAGGTCCTTGAACATTAATGAACAGGAGAGA 60
consensus_9083#1 ------------------------------------------------------------
consensus_9083#2 ------------------------------------------------------------
consensus_9083#0 CATAAGTCCTTCTCAATAACTCCAGGAACTGTTTTTTCACTAAAAGAATCAGGGTTAGAT 120
consensus_9083#1 ------------------------------------------------------------
consensus_9083#2 ------------------------------------------------------------
consensus_9083#0 AAAGAGGAAGAATGTATCATAGATTCCGTAGCCAACCTATCAGGATCATTAGAAGAGTCA 180
consensus_9083#1 ------------------------------------------------------------
consensus_9083#2 ------------------------------------------------------------
consensus_9083#0 GTATTGGATATAGGAAAATGACAGAAACGACATGTAATTTTAGAGTCATTTTCCAACACA 240
consensus_9083#1 ------------------------------------------------------------
consensus_9083#2 ------------------------------------------------------------
consensus_9083#0 ATTTTCGAAGATGTTCTAAGAATAGTTCCAGTAGTTGATGGGAATCCACCAGCTTGTAAT 300
consensus_9083#1 ------------------------------------------------------------
consensus_9083#2 ------------------------------------------------------------
consensus_9083#0 CCAGATAAGAAATCTTGAGTTAATCTTTCCAATGTATTGACATTAGGATTTTTAAGCACA 360
consensus_9083#1 ------------------------------------------------------------
consensus_9083#2 ------------------------------------------------------------
consensus_9083#0 ATCGATGTTAATGGATCATTGGGTGTAACATACTCCAAATGTATAAAATGAGCGAATAAA 420
consensus_9083#1 ------------------------------------------------------------
consensus_9083#2 ------------------------------------------------------------
consensus_9083#0 GCTATTTCTTTCGCCAGAAAATCACGTAATGGTCTAACAATTGTTATATCTTGGTATCGT 480
consensus_9083#1 ------------------------------------------------------------
consensus_9083#2 ------------------------------------------------------------
consensus_9083#0 TCATCTAAAAATGATGTTTGTAGACTACTATAATTTCCACGACCTTCTATTATTTCTAAT 540
consensus_9083#1 ----------------------------------------------GTATATTTTCTAAT 14
consensus_9083#2 ------------------------------------------------------------
consensus_9083#0 AAATATTTCACTGTCATTCTATTACTACAATCACCCATCATTAAATATTTACAATTCAGT 600
consensus_9083#1 AAATATTTCACTGTCATTCTATTACTACAATCACCCATCATTAAATATTTACAATTCAGT 74
consensus_9083#2 AAATCGTTTTATGTACAAACAGAAAGGTCCTTGAACATTAATGAACAGGAGAGACATAAG 60
**** ** *** * * * *** * * ** * * *
consensus_9083#0 TTTTTTGTACATTTAATCAATAA-TTTAATCGANTATAATCATGATAACGTTGTTTATTA 659
consensus_9083#1 TTTTTTGTACATTTAATCAATAAATTTAATCGATAATAATCATGATAACGTTGTTTATTA 134
consensus_9083#2 TCCTTC--TCAATAACTCCAGGAACTGTTTTTTCACTAAAAGAATCAGGGTTAGATAAAG 118
* ** ** * * ** * * * * *** * *** **
consensus_9083#0 CTAAGTGATGAAGAAGTCAATTGACTGGTCCATTTCTCATTTACTTCTGTAATTTCATCC 719
consensus_9083#1 CTAAGTGATGAAGAAGTCAATTGACTGGTCCATTTCTCATTTACTTCTGTAATTTCATCC 194
consensus_9083#2 AGGAAGAATGTATCA-TAGATTCCGTAGCCAACCTATCAGGATCATTAGAAGAGTCAGTA 177
* *** * * * *** * * * * * *** * * * * ***
consensus_9083#0 AACGTGATATTATAATATTCCAAACCAGTATTCTTCATTATTTTTGTAATTAATTCTAAA 779
consensus_9083#1 AACGTGATATTATAATATTCCAAACCAGTATTCTTCATTATTTTTGTAATTAATTCTAAA 254
consensus_9083#2 TTGGATATAGGAAACTAAAATGGAAAAAAAAACTTAAATCCTCTAAAAATACATCAACGA 237
* *** * * ** * * * *** * * * * *** ** *
consensus_9083#0 TTGGCTTGTGAATCTGATGATTCAACAAG-ATGGAATACCTT-TGGCACATTGTTTGGAT 837
consensus_9083#1 TTGGCTTGTGAATCTGATGATTCAACAAG-ATGGAATACCTT-TGGCACATTGTTTGGAT 312
consensus_9083#2 TTGACAAGTTACAGGAATTAAAGAACAAATACAAAATAATATATTGAATATGGTACAATA 297
*** * ** * ** * ***** * **** * * * * ** **
consensus_9083#0 TTCGTTTCATTATTCCATTATTATCATTATCGTTCAGTATTAATTTTAATAAAGTTGATG 897
consensus_9083#1 TTCGTTTCATTATTCCATTATTATCATTATCCTTCAGTATTAATTTTAATAAAGTTGATG 372
consensus_9083#2 AGGTTTTAGGTGAACTAACACGAACATGACCTAGTGCTATCAACCATTTTTAAGTCACTT 357
*** * * * * * *** * * *** ** * * **** *
consensus_9083#0 AATTTTGACCACCTGAATAAGGTT---CCTCGTGCCGAATTN------------------ 936
consensus_9083#1 AATTTTGACCACCTGAATAAGCTATAGCCATATTATTAATGATAGAATTTAATTTATATT 432
consensus_9083#2 AAAGC-GTTCACTTTAAGTATTTC-GGTGAGCGAAGTAACAACATAGTGTAAGATAAGAA 415
** * *** * ** * * **
consensus_9083#0 ------------------------------------------------------------
consensus_9083#1 TTCCAAATATTGTATTTATTTTATGATAACATTGATTAATAAAACATGATTTGCATAATG 492
consensus_9083#2 GGCCAAATTAGTTGTCGGATATCTGATCA-ACAAATCACCTACCCCTTTAGTCAATGATC 474
consensus_9083#0 ------------------------------------------------------------
consensus_9083#1 ATGGATCATCTTTTCTAATTAATACAGCTGGTGGAGATTGACATTTAATACAATGTGATA 552
consensus_9083#2 TCAAATAGGATTTTTTTAA-ATCACATAAGTTCACCGATGACATTTTTATTGACGTTGAG 533
consensus_9083#0 ------------------------------------------------------------
consensus_9083#1 TCCTTTCTTTCTTTTTAGAAATTGAAGTGAATAAACAAGAACAATCTTCTTCTTGATCCT 612
consensus_9083#2 TAGTACG----------------------------------------------------- 540
consensus_9083#0 ------------------------------------------------------------
consensus_9083#1 CCATTAGATTATGATTGTTATTGTTATCTCATCTCTTATGCAGGAAGACCCAGGTCAAAT 672
consensus_9083#2 ------------------------------------------------------------
consensus_9083#0 -----------
consensus_9083#1 CGGCCTCCATG 683
consensus_9083#2 -----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||