Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9084 cluster # 9084       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9084#0 length = 781 sequences # 1  
consensus_9084#1 length = 749 sequences # 6  
consensus_9084#2 length = 303 sequences # 1  

consensusID : consensus_9084#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 781
fasta sequence
                              [TGGTATCACGATACCTGCCTGTGCTGCATTTTTATTTCTATTTTGTGCACAGCAAGAAGTATAGATTAATTACAAGTTAATTGTATGCTAGAAATTGTAGACTTGAAAGAACCATATAAACTTGGATTGTCTATGTGCTCCGTTCTGTGGATTTTTTCTTATCTTGCATTGCTATTTTACCTATTCGTAATTTTGTTTTGCATCACCGTTGGATTGTTTTACGTAACTGAGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGNCATTGTTTTTTTAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTATCTTCGTAGTGGGTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTTCAACAATNCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCTATGGGCCCGTCCCTTCCTTTTTTTAAACTCCATATAACCAAACCATTTTGTTCTACCCAAACAGTTGAATTTCGGTTTTCCGTTGGAAGGGATTTTTTTTTACCAGTCCAACAAAAAACAGGAGGAATTTTGGGTTTTCCAAGTGTAAAAAAAAAGTAAAACAATTTTTGTTTTTACCGAATTTTAAAACCTTTCGCCCCAAAAGGTTTTAATTTTGGCATGGTTAAAAGGGGGGTCAAAAAGGAAAAA]

[+] EMBL CD080569             [TGGTATCACGATACCTGCCTGTGCTGCATTTTTATTTCTATTTTGTGCACAGCAAGAAGTATAGATTAATTACAAGTTAATTGTATGCTAGAAATTGTAGACTTGAAAGAACCATATAAACTTGGATTGTCTATGTGCTCCGTTCTGTGGATTTTTTCTTATCTTGCATTGCTATTTTACCTATTCGTAATTTTGTTTTGCATCACCGTTGGATTGTTTTACGTAACTGAGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGNCATTGTTTTTTTAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTATCTTCGTAGTGGGTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTTCAACAATNCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCTATGGGCCCGTCCCTTCCTTTTTTTAAACTCCATATAACCAAACCATTTTGTTCTACCCAAACAGTTGAATTTCGGTTTTCCGTTGGAAGGGATTTTTTTTTACCAGTCCAACAAAAAACAGGAGGAATTTTGGGTTTTCCAAGTGTAAAAAAAAAGTAAAACAATTTTTGTTTTTACCGAATTTTAAAACCTTTCGCCCCAAAAGGTTTTAATTTTGGCATGGTTAAAAGGGGGGTCAAAAAGGAAAAA]


>consensus_9084#0 TGGTATCACGATACCTGCCTGTGCTGCATTTTTATTTCTATTTTGTGCACAGCAAGAAGT ATAGATTAATTACAAGTTAATTGTATGCTAGAAATTGTAGACTTGAAAGAACCATATAAA CTTGGATTGTCTATGTGCTCCGTTCTGTGGATTTTTTCTTATCTTGCATTGCTATTTTAC CTATTCGTAATTTTGTTTTGCATCACCGTTGGATTGTTTTACGTAACTGAGCTAGTGGAA GAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTT CATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTT TGNCATTGTTTTTTTAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTC AACTATCTTCGTAGTGGGTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTT TTCAACAATNCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCTATGGGCCC GTCCCTTCCTTTTTTTAAACTCCATATAACCAAACCATTTTGTTCTACCCAAACAGTTGA ATTTCGGTTTTCCGTTGGAAGGGATTTTTTTTTACCAGTCCAACAAAAAACAGGAGGAAT TTTGGGTTTTCCAAGTGTAAAAAAAAAGTAAAACAATTTTTGTTTTTACCGAATTTTAAA ACCTTTCGCCCCAAAAGGTTTTAATTTTGGCATGGTTAAAAGGGGGGTCAAAAAGGAAAA A



consensusID : consensus_9084#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 749
fasta sequence
                              [AGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGTCATTGTTTTTATAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACCTTTACGTACCAA--AAAGGGCTTCTGACTTTTGGCAATCGGTTTAAAGTTGGGGTTACTTAAATGGTAATCCATTCTGGTTTTCCATGAATAATCGAAATCTTGCCTGGATAGTTTTGTTTTGTCTATGTACTTTCATAATTCTACTGTGGTTGTTAACGTTTGTACCTAAGTTCCGGATTGAATCTTGCGAAACATTTTT-CCCATAATGTGTATTTTGACTTAGTAAAATAAAATTACCTCA]

[+] EMBL CD185228             [AGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTGCTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGTCATTGTTTTTATAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCCCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTTATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACCTTTACGTACCAAAGAAAGG                                                                                                                                                                                                                                 ]
[+] EMBL CD185367             [AGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGTCATTGTTTTTATAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATCCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGACAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACC                                                                                                                                                                                                                                                    ]
[+] EMBL CD185243             [AGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGTCATTGTTTTTATAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACC                                                                                                                                                                                                                                                    ]
[+] EMBL CD133804             [AGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGTCATTGTTTTTATAGTTCAATGTTAAAAACGTTTCCAACTTTCCATTATCAGTCATTCAACTTTCTCGGAAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTC AATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATNTAGCATACC                                                                                                                                                                                                                                                    ]
[+] EMBL CD080485             [                                                                                                                                                                                   gaggAGTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACCTTTACGTACCAA  AAAGGGCTTCTGACTTTTGGCAATCGGTTTAAAGTTGGGGTTACTTAAATGGTAATCCATTCTGGTTTTCCATGAATAATCGAAATCTTGCCTGGATAGTTTTGTTTTGTCTATGTACTTTCATAATTCTACTGTGGTTGTTAACGTTTGTACCTAAGTTCCGGATTGAATCTTGCGAAACATTTTT CCCATAATGTGTATTTTGACTTAGTAAAATAAAATTACCTC ]
[-] EMBL CD074397             [                                                                                                                                                                                        GTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACCTTTACGTACCAA  AAAGGGCTTCTGACTTTTGGCAATCGGTTTAAAGTTGGGGTTACTTAAATGGTAATCCATTCTGGTTTTCCATGAATAATCGAAATCTTGCCTGGATAGTTTTGTTTTGTCTATGTACTTTCATAATTCTACTGTGGTTGTTAACGTTTGTACCTAAGTTCCGGATTGAATCTTGCGAAACATTTTTCCCCATAATGTGTATTTTGACTTAGTAAAATAAAATTACCTCA]


>consensus_9084#1 AGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAG AGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGA CTGGATTAGTTTGTCATTGTTTTTATAGTTCAATGTTAAAAACATTTCCAACTTTCCATT ATCAGTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCAT TTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTT TCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTAC CACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGA AAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTC TTGCTTATTTACGTGAATTTAGCATACCTTTACGTACCAAAAAGGGCTTCTGACTTTTGG CAATCGGTTTAAAGTTGGGGTTACTTAAATGGTAATCCATTCTGGTTTTCCATGAATAAT CGAAATCTTGCCTGGATAGTTTTGTTTTGTCTATGTACTTTCATAATTCTACTGTGGTTG TTAACGTTTGTACCTAAGTTCCGGATTGAATCTTGCGAAACATTTTTCCCATAATGTGTA TTTTGACTTAGTAAAATAAAATTACCTCA



consensusID : consensus_9084#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence
                              [AATCTGATATTTGGTGACTGGTTTCTAGGTTCGTAGGTCTTTGTCGTAGTATATGAATAATTTACATGCTTTTATTGTAAGCTAGTCTGCAAAGTAAAATATGGTTGGGAATTGGTTGTTCTTTGAATTGGATTCCTTTAAGTCTTGTGCTCTTATATTAACTGCATTAATTTCAGGTTAATTGTATGCTAGAAATTGTAGACTTGAAAGAACCATATAAACTTGGATTGTCTATGTGCTCCGTTCTGTGGATTTTTTCTTATCTTGCATTGCTATTTTACCTATTAGAAATTTTATTTAGCA]

[-] EMBL CD090345             [AATCTGATATTTGGTGACTGGTTTCTAGGTTCGTAGGTCTTTGTCGTAGTATATGAATAATTTACATGCTTTTATTGTAAGCTAGTCTGCAAAGTAAAATATGGTTGGGAATTGGTTGTTCTTTGAATTGGATTCCTTTAAGTCTTGTGCTCTTATATTAACTGCATTAATTTCAGGTTAATTGTATGCTAGAAATTGTAGACTTGAAAGAACCATATAAACTTGGATTGTCTATGTGCTCCGTTCTGTGGATTTTTTCTTATCTTGCATTGCTATTTTACCTATTAGAAATTTTATTTAGCA]


>consensus_9084#2 AATCTGATATTTGGTGACTGGTTTCTAGGTTCGTAGGTCTTTGTCGTAGTATATGAATAA TTTACATGCTTTTATTGTAAGCTAGTCTGCAAAGTAAAATATGGTTGGGAATTGGTTGTT CTTTGAATTGGATTCCTTTAAGTCTTGTGCTCTTATATTAACTGCATTAATTTCAGGTTA ATTGTATGCTAGAAATTGTAGACTTGAAAGAACCATATAAACTTGGATTGTCTATGTGCT CCGTTCTGTGGATTTTTTCTTATCTTGCATTGCTATTTTACCTATTAGAAATTTTATTTA GCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9084#0      TGGTATCACGATACCTGCCTGTGCTGCATTTTTATTTCTATTTTGTGCACAGCAAGAAGT 60
consensus_9084#1      ------------------------------------------------------------
consensus_9084#2      ------------------------------------------------------------
                                                                                  

consensus_9084#0      ATAGATTAATTACAAGTTAATTGTATGCTAGAAATTGTAGACTTGAAAGAACCATATAAA 120
consensus_9084#1      ------------------------------------------------------------
consensus_9084#2      ------------------------------------------------------------
                                                                                  

consensus_9084#0      CTTGGATTGTCTATGTGCTCCGTTCTGTGGATTTTTTCTTATCTTGCATTGCTATTTTAC 180
consensus_9084#1      ------------------------------------------------------------
consensus_9084#2      ------------------------------------------------------------
                                                                                  

consensus_9084#0      CTATTCGTAATTTTGTTTTGCATCACCGTTGGATTGTTTTACGTAACTGAGCTAGTGGAA 240
consensus_9084#1      -------------------------------------------------AGCTAGTGGAA 11
consensus_9084#2      ------------------------------------------------------------
                                                                                  

consensus_9084#0      GAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTT 300
consensus_9084#1      GAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTT 71
consensus_9084#2      --------------------------AATCTGATATTTGGTGACTG----GTTTCTAGGT 30
                                                ***  * **     *   **    * *  **  *

consensus_9084#0      CATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTT 360
consensus_9084#1      CATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTT 131
consensus_9084#2      TCGTAGGTCTTTGTCGTAGTATATGAATAATTTACA-TGCTTTTATTG--TAAGCTAGTC 87
                         *   *  ** *  **    ****      *  * * *** ** **  *    **** 

consensus_9084#0      TGNCATTGTTTTTTTAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTC 420
consensus_9084#1      TGTCATTGTTTTTATAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTC 191
consensus_9084#2      TGCAAAGTAAAATATGGTTGGGAATTGGTTGTTCTTTGAATTGGATTCCTTTAAGTCTTG 147
                      **  *       * * ***     **        **  ** *        * *    ** 

consensus_9084#0      AACTATCTTCGTAGTGGGTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTT 480
consensus_9084#1      AACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTT 251
consensus_9084#2      TGCTCTTATATTAACTGCATTAATTTCAG-GTTAATTGTATGCTAGAAAT---TGTAGAC 203
                        ** *     **   *  ***  ** *   ** *   * *  * * * *   ****   

consensus_9084#0      TTCAACAATNCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTC-TATGGGCC 539
consensus_9084#1      TCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCC 311
consensus_9084#2      TTGAAAGAACCATATAAACTTGG-------ATTGTCTATGT-GCTCCGTTC-TGTGGATT 254
                      *  **  *  **  *  * *          ** * **** *  *    *** * ***   

consensus_9084#0      CGTCCCTTCCTTTTTTTAAACTCCATATAACCAAACCATTTTGTTCTACC-CAAACAGTT 598
consensus_9084#1      GTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTT 371
consensus_9084#2      TTTTCTTATCTTGCATTGCTATT-TTACCTATTAGAAATTTTATTTAGCA---------- 303
                        * * *  ***   **    *   **      *   ***** **   *           

consensus_9084#0      GAATTTCGGTTTTCCGTTGGAAGGGATTTTTTTTTACCAGTCCAACA--AAAAACAGGAG 656
consensus_9084#1      GAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGAT 431
consensus_9084#2      ------------------------------------------------------------
                                                                                  

consensus_9084#0      GAA--TTTTGGGTTTTCCAAGTGTAAAAAAAAAG---TAAA-ACAATTTTTGTTT--TTA 708
consensus_9084#1      GTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTA 491
consensus_9084#2      ------------------------------------------------------------
                                                                                  

consensus_9084#0      CCGAATTTTA--AAACCTTT-CGCCCCAAAAGG----TTTTAATTTTGGCA--TGGTTAA 759
consensus_9084#1      CGTGAATTTAGCATACCTTTACGTACCAAAAAGGGCTTCTGACTTTTGGCAATCGGTTTA 551
consensus_9084#2      ------------------------------------------------------------
                                                                                  

consensus_9084#0      AAGG-GGGGTCA---AAAAGGAAAAA---------------------------------- 781
consensus_9084#1      AAGTTGGGGTTACTTAAATGGTAATCCATTCTGGTTTTCCATGAATAATCGAAATCTTGC 611
consensus_9084#2      ------------------------------------------------------------
                                                                                  

consensus_9084#0      ------------------------------------------------------------
consensus_9084#1      CTGGATAGTTTTGTTTTGTCTATGTACTTTCATAATTCTACTGTGGTTGTTAACGTTTGT 671
consensus_9084#2      ------------------------------------------------------------
                                                                                  

consensus_9084#0      ------------------------------------------------------------
consensus_9084#1      ACCTAAGTTCCGGATTGAATCTTGCGAAACATTTTTCCCATAATGTGTATTTTGACTTAG 731
consensus_9084#2      ------------------------------------------------------------
                                                                                  

consensus_9084#0      ------------------
consensus_9084#1      TAAAATAAAATTACCTCA 749
consensus_9084#2      ------------------
                                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)