These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9084#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 781 fasta sequence [TGGTATCACGATACCTGCCTGTGCTGCATTTTTATTTCTATTTTGTGCACAGCAAGAAGTATAGATTAATTACAAGTTAATTGTATGCTAGAAATTGTAGACTTGAAAGAACCATATAAACTTGGATTGTCTATGTGCTCCGTTCTGTGGATTTTTTCTTATCTTGCATTGCTATTTTACCTATTCGTAATTTTGTTTTGCATCACCGTTGGATTGTTTTACGTAACTGAGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGNCATTGTTTTTTTAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTATCTTCGTAGTGGGTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTTCAACAATNCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCTATGGGCCCGTCCCTTCCTTTTTTTAAACTCCATATAACCAAACCATTTTGTTCTACCCAAACAGTTGAATTTCGGTTTTCCGTTGGAAGGGATTTTTTTTTACCAGTCCAACAAAAAACAGGAGGAATTTTGGGTTTTCCAAGTGTAAAAAAAAAGTAAAACAATTTTTGTTTTTACCGAATTTTAAAACCTTTCGCCCCAAAAGGTTTTAATTTTGGCATGGTTAAAAGGGGGGTCAAAAAGGAAAAA] [+] EMBL CD080569 [TGGTATCACGATACCTGCCTGTGCTGCATTTTTATTTCTATTTTGTGCACAGCAAGAAGTATAGATTAATTACAAGTTAATTGTATGCTAGAAATTGTAGACTTGAAAGAACCATATAAACTTGGATTGTCTATGTGCTCCGTTCTGTGGATTTTTTCTTATCTTGCATTGCTATTTTACCTATTCGTAATTTTGTTTTGCATCACCGTTGGATTGTTTTACGTAACTGAGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGNCATTGTTTTTTTAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTATCTTCGTAGTGGGTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTTCAACAATNCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCTATGGGCCCGTCCCTTCCTTTTTTTAAACTCCATATAACCAAACCATTTTGTTCTACCCAAACAGTTGAATTTCGGTTTTCCGTTGGAAGGGATTTTTTTTTACCAGTCCAACAAAAAACAGGAGGAATTTTGGGTTTTCCAAGTGTAAAAAAAAAGTAAAACAATTTTTGTTTTTACCGAATTTTAAAACCTTTCGCCCCAAAAGGTTTTAATTTTGGCATGGTTAAAAGGGGGGTCAAAAAGGAAAAA] consensusID : consensus_9084#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 749 fasta sequence [AGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGTCATTGTTTTTATAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACCTTTACGTACCAA--AAAGGGCTTCTGACTTTTGGCAATCGGTTTAAAGTTGGGGTTACTTAAATGGTAATCCATTCTGGTTTTCCATGAATAATCGAAATCTTGCCTGGATAGTTTTGTTTTGTCTATGTACTTTCATAATTCTACTGTGGTTGTTAACGTTTGTACCTAAGTTCCGGATTGAATCTTGCGAAACATTTTT-CCCATAATGTGTATTTTGACTTAGTAAAATAAAATTACCTCA] [+] EMBL CD185228 [AGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTGCTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGTCATTGTTTTTATAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCCCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTTATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACCTTTACGTACCAAAGAAAGG ] [+] EMBL CD185367 [AGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGTCATTGTTTTTATAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATCCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGACAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACC ] [+] EMBL CD185243 [AGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGTCATTGTTTTTATAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACC ] [+] EMBL CD133804 [AGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGTCATTGTTTTTATAGTTCAATGTTAAAAACGTTTCCAACTTTCCATTATCAGTCATTCAACTTTCTCGGAAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTC AATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATNTAGCATACC ] [+] EMBL CD080485 [ gaggAGTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACCTTTACGTACCAA AAAGGGCTTCTGACTTTTGGCAATCGGTTTAAAGTTGGGGTTACTTAAATGGTAATCCATTCTGGTTTTCCATGAATAATCGAAATCTTGCCTGGATAGTTTTGTTTTGTCTATGTACTTTCATAATTCTACTGTGGTTGTTAACGTTTGTACCTAAGTTCCGGATTGAATCTTGCGAAACATTTTT CCCATAATGTGTATTTTGACTTAGTAAAATAAAATTACCTC ] [-] EMBL CD074397 [ GTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACCTTTACGTACCAA AAAGGGCTTCTGACTTTTGGCAATCGGTTTAAAGTTGGGGTTACTTAAATGGTAATCCATTCTGGTTTTCCATGAATAATCGAAATCTTGCCTGGATAGTTTTGTTTTGTCTATGTACTTTCATAATTCTACTGTGGTTGTTAACGTTTGTACCTAAGTTCCGGATTGAATCTTGCGAAACATTTTTCCCCATAATGTGTATTTTGACTTAGTAAAATAAAATTACCTCA] consensusID : consensus_9084#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [AATCTGATATTTGGTGACTGGTTTCTAGGTTCGTAGGTCTTTGTCGTAGTATATGAATAATTTACATGCTTTTATTGTAAGCTAGTCTGCAAAGTAAAATATGGTTGGGAATTGGTTGTTCTTTGAATTGGATTCCTTTAAGTCTTGTGCTCTTATATTAACTGCATTAATTTCAGGTTAATTGTATGCTAGAAATTGTAGACTTGAAAGAACCATATAAACTTGGATTGTCTATGTGCTCCGTTCTGTGGATTTTTTCTTATCTTGCATTGCTATTTTACCTATTAGAAATTTTATTTAGCA] [-] EMBL CD090345 [AATCTGATATTTGGTGACTGGTTTCTAGGTTCGTAGGTCTTTGTCGTAGTATATGAATAATTTACATGCTTTTATTGTAAGCTAGTCTGCAAAGTAAAATATGGTTGGGAATTGGTTGTTCTTTGAATTGGATTCCTTTAAGTCTTGTGCTCTTATATTAACTGCATTAATTTCAGGTTAATTGTATGCTAGAAATTGTAGACTTGAAAGAACCATATAAACTTGGATTGTCTATGTGCTCCGTTCTGTGGATTTTTTCTTATCTTGCATTGCTATTTTACCTATTAGAAATTTTATTTAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9084#0 TGGTATCACGATACCTGCCTGTGCTGCATTTTTATTTCTATTTTGTGCACAGCAAGAAGT 60 consensus_9084#1 ------------------------------------------------------------ consensus_9084#2 ------------------------------------------------------------ consensus_9084#0 ATAGATTAATTACAAGTTAATTGTATGCTAGAAATTGTAGACTTGAAAGAACCATATAAA 120 consensus_9084#1 ------------------------------------------------------------ consensus_9084#2 ------------------------------------------------------------ consensus_9084#0 CTTGGATTGTCTATGTGCTCCGTTCTGTGGATTTTTTCTTATCTTGCATTGCTATTTTAC 180 consensus_9084#1 ------------------------------------------------------------ consensus_9084#2 ------------------------------------------------------------ consensus_9084#0 CTATTCGTAATTTTGTTTTGCATCACCGTTGGATTGTTTTACGTAACTGAGCTAGTGGAA 240 consensus_9084#1 -------------------------------------------------AGCTAGTGGAA 11 consensus_9084#2 ------------------------------------------------------------ consensus_9084#0 GAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTT 300 consensus_9084#1 GAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTT 71 consensus_9084#2 --------------------------AATCTGATATTTGGTGACTG----GTTTCTAGGT 30 *** * ** * ** * * ** * consensus_9084#0 CATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTT 360 consensus_9084#1 CATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTT 131 consensus_9084#2 TCGTAGGTCTTTGTCGTAGTATATGAATAATTTACA-TGCTTTTATTG--TAAGCTAGTC 87 * * ** * ** **** * * * *** ** ** * **** consensus_9084#0 TGNCATTGTTTTTTTAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTC 420 consensus_9084#1 TGTCATTGTTTTTATAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTC 191 consensus_9084#2 TGCAAAGTAAAATATGGTTGGGAATTGGTTGTTCTTTGAATTGGATTCCTTTAAGTCTTG 147 ** * * * *** ** ** ** * * * ** consensus_9084#0 AACTATCTTCGTAGTGGGTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTT 480 consensus_9084#1 AACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTT 251 consensus_9084#2 TGCTCTTATATTAACTGCATTAATTTCAG-GTTAATTGTATGCTAGAAAT---TGTAGAC 203 ** * ** * *** ** * ** * * * * * * * **** consensus_9084#0 TTCAACAATNCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTC-TATGGGCC 539 consensus_9084#1 TCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCC 311 consensus_9084#2 TTGAAAGAACCATATAAACTTGG-------ATTGTCTATGT-GCTCCGTTC-TGTGGATT 254 * ** * ** * * * ** * **** * * *** * *** consensus_9084#0 CGTCCCTTCCTTTTTTTAAACTCCATATAACCAAACCATTTTGTTCTACC-CAAACAGTT 598 consensus_9084#1 GTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTT 371 consensus_9084#2 TTTTCTTATCTTGCATTGCTATT-TTACCTATTAGAAATTTTATTTAGCA---------- 303 * * * *** ** * ** * ***** ** * consensus_9084#0 GAATTTCGGTTTTCCGTTGGAAGGGATTTTTTTTTACCAGTCCAACA--AAAAACAGGAG 656 consensus_9084#1 GAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGAT 431 consensus_9084#2 ------------------------------------------------------------ consensus_9084#0 GAA--TTTTGGGTTTTCCAAGTGTAAAAAAAAAG---TAAA-ACAATTTTTGTTT--TTA 708 consensus_9084#1 GTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTA 491 consensus_9084#2 ------------------------------------------------------------ consensus_9084#0 CCGAATTTTA--AAACCTTT-CGCCCCAAAAGG----TTTTAATTTTGGCA--TGGTTAA 759 consensus_9084#1 CGTGAATTTAGCATACCTTTACGTACCAAAAAGGGCTTCTGACTTTTGGCAATCGGTTTA 551 consensus_9084#2 ------------------------------------------------------------ consensus_9084#0 AAGG-GGGGTCA---AAAAGGAAAAA---------------------------------- 781 consensus_9084#1 AAGTTGGGGTTACTTAAATGGTAATCCATTCTGGTTTTCCATGAATAATCGAAATCTTGC 611 consensus_9084#2 ------------------------------------------------------------ consensus_9084#0 ------------------------------------------------------------ consensus_9084#1 CTGGATAGTTTTGTTTTGTCTATGTACTTTCATAATTCTACTGTGGTTGTTAACGTTTGT 671 consensus_9084#2 ------------------------------------------------------------ consensus_9084#0 ------------------------------------------------------------ consensus_9084#1 ACCTAAGTTCCGGATTGAATCTTGCGAAACATTTTTCCCATAATGTGTATTTTGACTTAG 731 consensus_9084#2 ------------------------------------------------------------ consensus_9084#0 ------------------ consensus_9084#1 TAAAATAAAATTACCTCA 749 consensus_9084#2 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||