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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9084#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 781 fasta sequence
[TGGTATCACGATACCTGCCTGTGCTGCATTTTTATTTCTATTTTGTGCACAGCAAGAAGTATAGATTAATTACAAGTTAATTGTATGCTAGAAATTGTAGACTTGAAAGAACCATATAAACTTGGATTGTCTATGTGCTCCGTTCTGTGGATTTTTTCTTATCTTGCATTGCTATTTTACCTATTCGTAATTTTGTTTTGCATCACCGTTGGATTGTTTTACGTAACTGAGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGNCATTGTTTTTTTAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTATCTTCGTAGTGGGTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTTCAACAATNCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCTATGGGCCCGTCCCTTCCTTTTTTTAAACTCCATATAACCAAACCATTTTGTTCTACCCAAACAGTTGAATTTCGGTTTTCCGTTGGAAGGGATTTTTTTTTACCAGTCCAACAAAAAACAGGAGGAATTTTGGGTTTTCCAAGTGTAAAAAAAAAGTAAAACAATTTTTGTTTTTACCGAATTTTAAAACCTTTCGCCCCAAAAGGTTTTAATTTTGGCATGGTTAAAAGGGGGGTCAAAAAGGAAAAA]
[+] EMBL CD080569 [TGGTATCACGATACCTGCCTGTGCTGCATTTTTATTTCTATTTTGTGCACAGCAAGAAGTATAGATTAATTACAAGTTAATTGTATGCTAGAAATTGTAGACTTGAAAGAACCATATAAACTTGGATTGTCTATGTGCTCCGTTCTGTGGATTTTTTCTTATCTTGCATTGCTATTTTACCTATTCGTAATTTTGTTTTGCATCACCGTTGGATTGTTTTACGTAACTGAGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGNCATTGTTTTTTTAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTATCTTCGTAGTGGGTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTTCAACAATNCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCTATGGGCCCGTCCCTTCCTTTTTTTAAACTCCATATAACCAAACCATTTTGTTCTACCCAAACAGTTGAATTTCGGTTTTCCGTTGGAAGGGATTTTTTTTTACCAGTCCAACAAAAAACAGGAGGAATTTTGGGTTTTCCAAGTGTAAAAAAAAAGTAAAACAATTTTTGTTTTTACCGAATTTTAAAACCTTTCGCCCCAAAAGGTTTTAATTTTGGCATGGTTAAAAGGGGGGTCAAAAAGGAAAAA]
consensusID : consensus_9084#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 749 fasta sequence
[AGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGTCATTGTTTTTATAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACCTTTACGTACCAA--AAAGGGCTTCTGACTTTTGGCAATCGGTTTAAAGTTGGGGTTACTTAAATGGTAATCCATTCTGGTTTTCCATGAATAATCGAAATCTTGCCTGGATAGTTTTGTTTTGTCTATGTACTTTCATAATTCTACTGTGGTTGTTAACGTTTGTACCTAAGTTCCGGATTGAATCTTGCGAAACATTTTT-CCCATAATGTGTATTTTGACTTAGTAAAATAAAATTACCTCA]
[+] EMBL CD185228 [AGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTGCTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGTCATTGTTTTTATAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCCCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTTATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACCTTTACGTACCAAAGAAAGG ]
[+] EMBL CD185367 [AGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGTCATTGTTTTTATAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATCCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGACAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACC ]
[+] EMBL CD185243 [AGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGTCATTGTTTTTATAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACC ]
[+] EMBL CD133804 [AGCTAGTGGAAGAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTTCATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTTTGTCATTGTTTTTATAGTTCAATGTTAAAAACGTTTCCAACTTTCCATTATCAGTCATTCAACTTTCTCGGAAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTC AATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATNTAGCATACC ]
[+] EMBL CD080485 [ gaggAGTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACCTTTACGTACCAA AAAGGGCTTCTGACTTTTGGCAATCGGTTTAAAGTTGGGGTTACTTAAATGGTAATCCATTCTGGTTTTCCATGAATAATCGAAATCTTGCCTGGATAGTTTTGTTTTGTCTATGTACTTTCATAATTCTACTGTGGTTGTTAACGTTTGTACCTAAGTTCCGGATTGAATCTTGCGAAACATTTTT CCCATAATGTGTATTTTGACTTAGTAAAATAAAATTACCTC ]
[-] EMBL CD074397 [ GTCATTCAACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTTTCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCCGTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTTGAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGATGTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTACGTGAATTTAGCATACCTTTACGTACCAA AAAGGGCTTCTGACTTTTGGCAATCGGTTTAAAGTTGGGGTTACTTAAATGGTAATCCATTCTGGTTTTCCATGAATAATCGAAATCTTGCCTGGATAGTTTTGTTTTGTCTATGTACTTTCATAATTCTACTGTGGTTGTTAACGTTTGTACCTAAGTTCCGGATTGAATCTTGCGAAACATTTTTCCCCATAATGTGTATTTTGACTTAGTAAAATAAAATTACCTCA]
consensusID : consensus_9084#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence
[AATCTGATATTTGGTGACTGGTTTCTAGGTTCGTAGGTCTTTGTCGTAGTATATGAATAATTTACATGCTTTTATTGTAAGCTAGTCTGCAAAGTAAAATATGGTTGGGAATTGGTTGTTCTTTGAATTGGATTCCTTTAAGTCTTGTGCTCTTATATTAACTGCATTAATTTCAGGTTAATTGTATGCTAGAAATTGTAGACTTGAAAGAACCATATAAACTTGGATTGTCTATGTGCTCCGTTCTGTGGATTTTTTCTTATCTTGCATTGCTATTTTACCTATTAGAAATTTTATTTAGCA]
[-] EMBL CD090345 [AATCTGATATTTGGTGACTGGTTTCTAGGTTCGTAGGTCTTTGTCGTAGTATATGAATAATTTACATGCTTTTATTGTAAGCTAGTCTGCAAAGTAAAATATGGTTGGGAATTGGTTGTTCTTTGAATTGGATTCCTTTAAGTCTTGTGCTCTTATATTAACTGCATTAATTTCAGGTTAATTGTATGCTAGAAATTGTAGACTTGAAAGAACCATATAAACTTGGATTGTCTATGTGCTCCGTTCTGTGGATTTTTTCTTATCTTGCATTGCTATTTTACCTATTAGAAATTTTATTTAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9084#0 TGGTATCACGATACCTGCCTGTGCTGCATTTTTATTTCTATTTTGTGCACAGCAAGAAGT 60
consensus_9084#1 ------------------------------------------------------------
consensus_9084#2 ------------------------------------------------------------
consensus_9084#0 ATAGATTAATTACAAGTTAATTGTATGCTAGAAATTGTAGACTTGAAAGAACCATATAAA 120
consensus_9084#1 ------------------------------------------------------------
consensus_9084#2 ------------------------------------------------------------
consensus_9084#0 CTTGGATTGTCTATGTGCTCCGTTCTGTGGATTTTTTCTTATCTTGCATTGCTATTTTAC 180
consensus_9084#1 ------------------------------------------------------------
consensus_9084#2 ------------------------------------------------------------
consensus_9084#0 CTATTCGTAATTTTGTTTTGCATCACCGTTGGATTGTTTTACGTAACTGAGCTAGTGGAA 240
consensus_9084#1 -------------------------------------------------AGCTAGTGGAA 11
consensus_9084#2 ------------------------------------------------------------
consensus_9084#0 GAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTT 300
consensus_9084#1 GAATATATTGTCACTACAGGCAAGATAATACGCTACACAATATATGCAGAGATAGTACTT 71
consensus_9084#2 --------------------------AATCTGATATTTGGTGACTG----GTTTCTAGGT 30
*** * ** * ** * * ** *
consensus_9084#0 CATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTT 360
consensus_9084#1 CATTTCATTCTTCTGATAACGGATGACGTTCCTGTAATACTTGTACTGACTGGATTAGTT 131
consensus_9084#2 TCGTAGGTCTTTGTCGTAGTATATGAATAATTTACA-TGCTTTTATTG--TAAGCTAGTC 87
* * ** * ** **** * * * *** ** ** * ****
consensus_9084#0 TGNCATTGTTTTTTTAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTC 420
consensus_9084#1 TGTCATTGTTTTTATAGTTCAATGTTAAAAACATTTCCAACTTTCCATTATCAGTCATTC 191
consensus_9084#2 TGCAAAGTAAAATATGGTTGGGAATTGGTTGTTCTTTGAATTGGATTCCTTTAAGTCTTG 147
** * * * *** ** ** ** * * * **
consensus_9084#0 AACTATCTTCGTAGTGGGTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTT 480
consensus_9084#1 AACTTTCTCGGTAGTGGTTTTATGTTAATTATTCACCATTTAGTGGCATTTCGTGTATTT 251
consensus_9084#2 TGCTCTTATATTAACTGCATTAATTTCAG-GTTAATTGTATGCTAGAAAT---TGTAGAC 203
** * ** * *** ** * ** * * * * * * * ****
consensus_9084#0 TTCAACAATNCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTC-TATGGGCC 539
consensus_9084#1 TCAAACAATCCAAGTCCATTCTCTTACCTCATAGCCTATTTTACATTTTTCCTATGGGCC 311
consensus_9084#2 TTGAAAGAACCATATAAACTTGG-------ATTGTCTATGT-GCTCCGTTC-TGTGGATT 254
* ** * ** * * * ** * **** * * *** * ***
consensus_9084#0 CGTCCCTTCCTTTTTTTAAACTCCATATAACCAAACCATTTTGTTCTACC-CAAACAGTT 598
consensus_9084#1 GTTCCTTTTCTTTTTTTAATCTCATTATCAGCAAACGATTTTGTTCTACCACAAACAGTT 371
consensus_9084#2 TTTTCTTATCTTGCATTGCTATT-TTACCTATTAGAAATTTTATTTAGCA---------- 303
* * * *** ** * ** * ***** ** *
consensus_9084#0 GAATTTCGGTTTTCCGTTGGAAGGGATTTTTTTTTACCAGTCCAACA--AAAAACAGGAG 656
consensus_9084#1 GAATTTCGGTTTCCCGTTGAAAGTGATTTTTTATTACAGAGTCAACAGAAAAAACATGAT 431
consensus_9084#2 ------------------------------------------------------------
consensus_9084#0 GAA--TTTTGGGTTTTCCAAGTGTAAAAAAAAAG---TAAA-ACAATTTTTGTTT--TTA 708
consensus_9084#1 GTAGTTTCTGCATATTTCAAATGTAAAAGAAAGAGCTTATATACATTTCTTGCTTATTTA 491
consensus_9084#2 ------------------------------------------------------------
consensus_9084#0 CCGAATTTTA--AAACCTTT-CGCCCCAAAAGG----TTTTAATTTTGGCA--TGGTTAA 759
consensus_9084#1 CGTGAATTTAGCATACCTTTACGTACCAAAAAGGGCTTCTGACTTTTGGCAATCGGTTTA 551
consensus_9084#2 ------------------------------------------------------------
consensus_9084#0 AAGG-GGGGTCA---AAAAGGAAAAA---------------------------------- 781
consensus_9084#1 AAGTTGGGGTTACTTAAATGGTAATCCATTCTGGTTTTCCATGAATAATCGAAATCTTGC 611
consensus_9084#2 ------------------------------------------------------------
consensus_9084#0 ------------------------------------------------------------
consensus_9084#1 CTGGATAGTTTTGTTTTGTCTATGTACTTTCATAATTCTACTGTGGTTGTTAACGTTTGT 671
consensus_9084#2 ------------------------------------------------------------
consensus_9084#0 ------------------------------------------------------------
consensus_9084#1 ACCTAAGTTCCGGATTGAATCTTGCGAAACATTTTTCCCATAATGTGTATTTTGACTTAG 731
consensus_9084#2 ------------------------------------------------------------
consensus_9084#0 ------------------
consensus_9084#1 TAAAATAAAATTACCTCA 749
consensus_9084#2 ------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||