These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9085#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 660 fasta sequence [CTCGAGGGCCANAATTCGGCACGAGGGTGGTTTCAGCAATGCTGTTTGTCGTATCCTAGAAATGCATGGAATTCTAGAAAAAGCAAGTAAAGGAGATGATCCAGAATTGTTCGCGTCGTATGATGTCTTAGAGAATGAAGAGCTACGAGCTGCTGCTAAAGTGTTTGCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAAAATGTGTTATACTGTAGCACTGATGTTTAGTCTTAATTTTACCCATAACACTTAGTTGGTATCTTTTTATGATTGTTTTAGGTTTTCATCTGCAATTTTTGAATTTTAACAAACCATTATTCGACGAAATGCAGTAGCCATGTATTATAACGAATGATATTATATTTTGTTGTTTAAGCTATTGTGAAGATTCCGTTAGACCAAGCACAGCTTACCTGCATATTCTAAAAAAGCAATATCATCATAACATTATAAATTTTTCACAATTAAAGATT] [+] EMBL CD083065 [CTCGAGGGCCANAATTCGGCACGAGGGTGGTTTCAGCAATGCTGTTTGTCGTATCCTAGAAATGCATGGAATTCTAGAAAAAGCAAGTAAAGGAGATGATCCAGAATTGTTCGCGTCGTATGATGTCTTAGAGAATGAAGAGCTACGAGCTGCTGCTAAAGTGTTTGCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAAAATGTGTTATACTGTAGCACTGATGTTTAGTCTTAATTTTACCCATAACACTTAGTTGGTATCTTTTTATGATTGTTTTAGGTTTTCATCTGCAATTTTTGAATTTTAACAAACCATTATTCGACGAAATGCAGTAGCCATGTATTATAACGAATGATATTATATTTTGTTGTTTAAGCTATTGTGAAGATTCCGTTAGACCAAGCACAGCTTACCTGCATATTCTAAAAAAGC ATATCATCATAACATTATAAAATTTTCACAATTAAAG ] [-] EMBL CD076535 [ TCCTAGAAATGCATGGAATTCTAGAAAAAGCAAGTAAAGGAGATGATCCAGAATTGTTCGCGTCGTATGATGTCTTAGAGAATGAAGAGCTACGAGCTGCTGCTAAAGTGTTTGCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAAAATGTGTTATACTGTAGCACTGATGTTTAGTCTTAATTTTACCCATAACACTTAGTTGGTATCTTTTTATGATTGTTTTAGGTTTTCATCTGCAATTTTTGAATTTTAACAAACCATTATTCGACGAAATGCAGTAGCCATGTATTATAACGAATGATATTATATTTTGTTGTTTAAGCTATTGTGAAGATTCCGTTAGACCAAGCACAGCTTACCTGCATATTCT AAAAAGCAATATCATCATAACATTATAAATTTTTCACAATTAAAGATT] [-] EMBL CD076638 [ CTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAAAATGTGTTATACTGTAGCACTGATGTTTAGTCTTAATTTTACCCATAACACTTAGTTGGTATCTTTTTATGATTGTTTTAGGTTTTCATCTGCAATTTTTGAATTTTAACAAACCATTATTCGACGAAATGCAGTAGCCATGTATTATAACGAATGATATTATATTTTGTTGTTTAAGCTATTGTGAAGATTCCGTTAGACCAAGCACAGCTTACCTGCATATT TTAAAAAGCAATATCATCATAACATTATAAATTTTTCACAATTAAAGA ] consensusID : consensus_9085#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 579 fasta sequence [ATTTGGTGAAAGGAAGTCGTATTGTGCTTTTTATGAAAGGGAATCCAAATGAACCACGATGTGGTTTCAGCAATGCTGTTTGTCGTATCCTAGAAATGCATGGAATTCTAGAAAAAGCAAGTAAAGGAGATGATCCAGAATTGTTCGCGTCGTATGATGTCTTAGAGAATGAAGAGCTACGAGCTGCTGCTAAAGTGTTTGCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAAAATGTGTTATACTGTAGCACTGATGTTTAGTCTTAATTTTACCCATAACACTTAGTTGGTATCTTTTTATGATTGTTTTAGGTTTTCATCTGCAATTTTTGAATTNTAACAAACCATTATTCGACGAAATGCAGTAGCCATGTATTANTACGAATGATAT] [+] EMBL CD082949 [ATTTGGTGAAAGGAAGTCGTATTGTGCTTTTTATGAAAGGGAATCCAAATGAACCACGATGTGGTTTCAGCAATGCTGTTTGTCGTATCCTAGAAATGCATGGAATTCTAGAAAAAGCAAGTAAAGGAGATGATCCAGAATTGTTCGCGTCGTATGATGTCTTAGAGAATGAAGAGCTACGAGCTGCTGCTAAAGTGTTTGCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAAAATGTGTTATACTGTAGCACTGATGTTTAGTCTTAATTTTACCCATAACACTTAGTTGGTATCTTTTTATGATTGTTTTAGGTTTTCATCTGCAATTTTTGAATTNTAACAAACCATTATTCGACGAAATGCAGTAGCCATGTATTANTACGAATGATAT] [+] EMBL CD125571 [ TGCTGACTGGCCAACTTTCCCTCAGTTATATTTGGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAAAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATCTGTACAGTATCCCTATTTTCTGTTTGATAAAAAT ] [-] EMBL CD139067 [ GCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAAAATG ] [-] EMBL CD125522 [ GCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGCGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAAAATG ] [+] EMBL CD130255 [ TGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9085#0 -----------------------------------CTCGAGGGCCANAATTCGGCACGAG 25 consensus_9085#1 ATTTGGTGAAAGGAAGTCGTATTGTGCTTTTTATGAAAGGGAATCCAAATGAACCACGAT 60 * * * *** ***** consensus_9085#0 GGTGGTTTCAGCAATGCTGTTTGTCGTATCCTAGAAATGCATGGAATTCTAGAAAAAGCA 85 consensus_9085#1 G-TGGTTTCAGCAATGCTGTTTGTCGTATCCTAGAAATGCATGGAATTCTAGAAAAAGCA 119 * ********************************************************** consensus_9085#0 AGTAAAGGAGATGATCCAGAATTGTTCGCGTCGTATGATGTCTTAGAGAATGAAGAGCTA 145 consensus_9085#1 AGTAAAGGAGATGATCCAGAATTGTTCGCGTCGTATGATGTCTTAGAGAATGAAGAGCTA 179 ************************************************************ consensus_9085#0 CGAGCTGCTGCTAAAGTGTTTGCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGT 205 consensus_9085#1 CGAGCTGCTGCTAAAGTGTTTGCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGT 239 ************************************************************ consensus_9085#0 GAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAA 265 consensus_9085#1 GAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAA 299 ************************************************************ consensus_9085#0 GAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACA 325 consensus_9085#1 GAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACA 359 ************************************************************ consensus_9085#0 TGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAA 385 consensus_9085#1 TGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAA 419 ************************************************************ consensus_9085#0 AATGTGTTATACTGTAGCACTGATGTTTAGTCTTAATTTTACCCATAACACTTAGTTGGT 445 consensus_9085#1 AATGTGTTATACTGTAGCACTGATGTTTAGTCTTAATTTTACCCATAACACTTAGTTGGT 479 ************************************************************ consensus_9085#0 ATCTTTTTATGATTGTTTTAGGTTTTCATCTGCAATTTTTGAATTTTAACAAACCATTAT 505 consensus_9085#1 ATCTTTTTATGATTGTTTTAGGTTTTCATCTGCAATTTTTGAATTNTAACAAACCATTAT 539 ********************************************* ************** consensus_9085#0 TCGACGAAATGCAGTAGCCATGTATTATAACGAATGATATTATATTTTGTTGTTTAAGCT 565 consensus_9085#1 TCGACGAAATGCAGTAGCCATGTATTANTACGAATGATAT-------------------- 579 *************************** *********** consensus_9085#0 ATTGTGAAGATTCCGTTAGACCAAGCACAGCTTACCTGCATATTCTAAAAAAGCAATATC 625 consensus_9085#1 ------------------------------------------------------------ consensus_9085#0 ATCATAACATTATAAATTTTTCACAATTAAAGATT 660 consensus_9085#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||