These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 656 fasta sequence [CGTTTTGGAGGAATCGGTGATATTACTTACCGAGAGTGCATATTTCCCGAAAGGAATGCGTTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTGGTAATTCAGTGATTCATCCAGTAACACAGGCAAATT-GGCGTGGATGTTTTCCAGAGCATCCTGCGGCATCCCGATGTGATTTACCAGGAAATCGGTTTGTACGGAATCCGTGAGCTGAAAATCATTCAAGAGAATGCGGTACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTGGGATTTGTGACACGATAAGAACTGCCCCAATTGTTCGTGGTTCAGGTTGCGGACCCAGCGGGTTTCACCAGCGGGAATCGTCACCGATAAACCGTGGAAGATACTCATCAGCCGGAGGCGGTCATGTTCCTGCTCGTCGGTGAACTCAACCGTGTACAGGTCTGTTTTCGGATTGCTGGCAATGACTTCCGCCGCTAAACGTTTTTGTAAACTTTCTGCTGTTGCCATGGAAACTCCGCCCAATACCACGCTTGGCTCGTTGAGCAAAGTTGCAAGGATTCACTTTCGTTACAGCCCAGGAATTCCGAAAGCTGTTTGTTTACTTCTGTCAGTTTTACCGGATCGGTGATATAATC] [+] EMBL CD087815 [CGTATTGGCGGAATCGGTGATATTACTTACCGAGAGTGCATATTTCCCGAAAGGAATGCGTTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTGGTAATTCAGTGATTCATCCAGTAACACAGGCAAATT GGCGTGGATGTTTTCCAGAGCATCCTGCGGCATCCCGATGTGATTTACCAGGAAATCGGTTTGTACGGAATCCGTGAGCTGAAAATCATTCAAGAGAATGCGGTACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTGGGATTTGTGACACGATAAGAACTGCCCCAATTGTTCGTGGTTCAGGTTGCGGACCCAGCGGGTTTCACCAGCGGGAATCGTCACCGATAAACCGTGGAAGATACTCATCAGCCGGAGGCGGTCATGTTCCTGCTCGTCGGTGAACTCAACCGTGTACAGGTCTGTTTTCGGATTGCTGGCAATGAC ] [+] EMBL CD087905 [CGTTTTGGAGGAATCGGTGATATTACTTACCGAGAGTGCATATTTCCCGAAAGGAATGCGTTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTGGTAATTCAGTGATTCATCCAGTAACACAGGCAAATTGGGCGTGGATGTTTTCCAGAGCATCCTGCGGCA ] [+] EMBL CD087917 [CGTTTTGGAGGAATCGGTGATATTACTTACCGAGAGTGCATATTTCCCGAAAGGAATGCGTTCTTCCGAAC ATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTGGTA ] [+] EMBL CD087977 [ CATATTTCCCGAAAGGAATGCGTTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTGGTAATTCAGTGATTCATCCAGTAACACAGGCAAATT GGCGTGGATGTTTTCCAGAGCATCCTGCGGCATCCCGATGTGATATACCAGGAAATCGGTTTGTACGGAATCCGTGAGCTGAAAATCATTCAAGAGAATGCGGTACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTGNGATTTGTGACACGATAAGAACTGCCCCAATTGTTCGTGGNTCAGGTTGC ] [-] EMBL CD087827 [ AAAATCATTCAAGAGAATGCGTGACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTGGGATTTGTGACACGATAAGAACTGCCCCAATTGTTCGTGGTTCAGGTTGCGGACCCAGCGGGTTTCACCAGCGGGAATCGTCACCGATAAACCGTGGAAGATACTCATCAGCCGGAGGCGGTCATGTTCCTGCTCGTCGGTGAACTCAACCGTGTACAGGTCTGTTTTCGGATTGCTGGCAATGACTTCCGCCGCTAAACGTTTTTGTAAACTTTCTGCTGTTGCCATGGAAACTCCGCCCAATACCACGCTTGGCTCGTTGAGCAAAGTTGCAAGGATTCACTTTCGTTACAGCCCAGGAATTCCGAA ] [-] EMBL CD087868 [ AACCGTGGAAGATACTCATCAGCCGGAGGCGGTCATGTTCCTGCTCGTCGGTGAACTCAACCGTGTACAGGTCTGTNTTCGGATTGCTGGCAATGACTTCCGCCGCTAAACGTTTTTGTAAACTTTCTGCTGTTGCCATGGAAACTCCGCCCAATACCACGCTTGGCTCGTTGAGCAAAGTTGCAAGGATTCACTTTCGTTACAGCCCAGGAATTCCGTAAGCTGTTTGTTTACTTCTGTCAGTTTTACCGGATCGGTGATATAATC] consensusID : consensus_9086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 334 fasta sequence [TCATAGTCTGTTTACCTGTAGTGAACCGAGAGTGCATATTTCCCGAAAGGAATGCGTTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTGGTAATTCAGTGATTCATCCAGTAACACAGGCAAATTGGCGTGGATGTTTTCCAGAGCATCCTGCGGCATCCCGATGTGATTTACCAGGAAATCGGTTTGTACGGAATCCGTGAGCTGAAAATCATTCAAGAGAATGCGGTACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTGNGATTTGTGACACGATAAGAACTGCCCCAATTGTTCGT] [+] EMBL CD087928 [TCATAGTCTGTTTACCTGTAGTGAACCGAGAGTGCATATTTCCCGAAAGGAATGCGTTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTGGTAATTCAGTGATTCATCCAGTAACACAGGCAAATTGGCGTGGATGTTTTCCAGAGCATCCTGCGGCATCCCGATGTGATTTACCAGGAAATCGGTTTGTACGGAATCCGTGAGCTGAAAATCATTCAAGAGAATGCGGTACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTGNGATTTGTGACACGATAAGAACTGCCCCAATTGTTCGT] [+] EMBL CD087929 [ CATATTTCCCGAAAGGAATGCGTTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTGGTAATTCAGTGATTCATCCAGTAACACAGGCAAATTGGCGTGGATGTTTTCCAGAGCATCCTGCGGCATCCCGATGTGATTTACCAGGAAATCGGTTTGTACGGAATCCGAGAGCTGAAAATCATTCAAGAGAATGCGGTACCGNGAATAGCTTTGATTGTAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9086#0 CGTTTTGGAGGAATCGGTGATATTACTTACCGAGAGTGCATATTTCCCGAAAGGAATGCG 60 consensus_9086#1 --TCATAGTCTGTTTACCTGTAGTG--AACCGAGAGTGCATATTTCCCGAAAGGAATGCG 56 * * * * ** * ******************************** consensus_9086#0 TTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTG 120 consensus_9086#1 TTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTG 116 ************************************************************ consensus_9086#0 GTAATTCAGTGATTCATCCAGTAACACAGGCAAATTGGCGTGGATGTTTTCCAGAGCATC 180 consensus_9086#1 GTAATTCAGTGATTCATCCAGTAACACAGGCAAATTGGCGTGGATGTTTTCCAGAGCATC 176 ************************************************************ consensus_9086#0 CTGCGGCATCCCGATGTGATTTACCAGGAAATCGGTTTGTACGGAATCCGTGAGCTGAAA 240 consensus_9086#1 CTGCGGCATCCCGATGTGATTTACCAGGAAATCGGTTTGTACGGAATCCGTGAGCTGAAA 236 ************************************************************ consensus_9086#0 ATCATTCAAGAGAATGCGGTACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTG 300 consensus_9086#1 ATCATTCAAGAGAATGCGGTACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTG 296 ************************************************************ consensus_9086#0 GGATTTGTGACACGATAAGAACTGCCCCAATTGTTCGTGGTTCAGGTTGCGGACCCAGCG 360 consensus_9086#1 NGATTTGTGACACGATAAGAACTGCCCCAATTGTTCGT---------------------- 334 ************************************* consensus_9086#0 GGTTTCACCAGCGGGAATCGTCACCGATAAACCGTGGAAGATACTCATCAGCCGGAGGCG 420 consensus_9086#1 ------------------------------------------------------------ consensus_9086#0 GTCATGTTCCTGCTCGTCGGTGAACTCAACCGTGTACAGGTCTGTTTTCGGATTGCTGGC 480 consensus_9086#1 ------------------------------------------------------------ consensus_9086#0 AATGACTTCCGCCGCTAAACGTTTTTGTAAACTTTCTGCTGTTGCCATGGAAACTCCGCC 540 consensus_9086#1 ------------------------------------------------------------ consensus_9086#0 CAATACCACGCTTGGCTCGTTGAGCAAAGTTGCAAGGATTCACTTTCGTTACAGCCCAGG 600 consensus_9086#1 ------------------------------------------------------------ consensus_9086#0 AATTCCGAAAGCTGTTTGTTTACTTCTGTCAGTTTTACCGGATCGGTGATATAATC 656 consensus_9086#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||