cluster # 9086

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9086 cluster # 9086 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9086#0 length = 656 sequences # 6

consensus_9086#1 length = 334 sequences # 2

consensusID : consensus_9086#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 656
fasta sequence

                              [CGTTTTGGAGGAATCGGTGATATTACTTACCGAGAGTGCATATTTCCCGAAAGGAATGCGTTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTGGTAATTCAGTGATTCATCCAGTAACACAGGCAAATT-GGCGTGGATGTTTTCCAGAGCATCCTGCGGCATCCCGATGTGATTTACCAGGAAATCGGTTTGTACGGAATCCGTGAGCTGAAAATCATTCAAGAGAATGCGGTACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTGGGATTTGTGACACGATAAGAACTGCCCCAATTGTTCGTGGTTCAGGTTGCGGACCCAGCGGGTTTCACCAGCGGGAATCGTCACCGATAAACCGTGGAAGATACTCATCAGCCGGAGGCGGTCATGTTCCTGCTCGTCGGTGAACTCAACCGTGTACAGGTCTGTTTTCGGATTGCTGGCAATGACTTCCGCCGCTAAACGTTTTTGTAAACTTTCTGCTGTTGCCATGGAAACTCCGCCCAATACCACGCTTGGCTCGTTGAGCAAAGTTGCAAGGATTCACTTTCGTTACAGCCCAGGAATTCCGAAAGCTGTTTGTTTACTTCTGTCAGTTTTACCGGATCGGTGATATAATC]

[+] EMBL CD087815             [CGTATTGGCGGAATCGGTGATATTACTTACCGAGAGTGCATATTTCCCGAAAGGAATGCGTTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTGGTAATTCAGTGATTCATCCAGTAACACAGGCAAATT GGCGTGGATGTTTTCCAGAGCATCCTGCGGCATCCCGATGTGATTTACCAGGAAATCGGTTTGTACGGAATCCGTGAGCTGAAAATCATTCAAGAGAATGCGGTACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTGGGATTTGTGACACGATAAGAACTGCCCCAATTGTTCGTGGTTCAGGTTGCGGACCCAGCGGGTTTCACCAGCGGGAATCGTCACCGATAAACCGTGGAAGATACTCATCAGCCGGAGGCGGTCATGTTCCTGCTCGTCGGTGAACTCAACCGTGTACAGGTCTGTTTTCGGATTGCTGGCAATGAC                                                                                                                                                                          ]
[+] EMBL CD087905             [CGTTTTGGAGGAATCGGTGATATTACTTACCGAGAGTGCATATTTCCCGAAAGGAATGCGTTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTGGTAATTCAGTGATTCATCCAGTAACACAGGCAAATTGGGCGTGGATGTTTTCCAGAGCATCCTGCGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD087917             [CGTTTTGGAGGAATCGGTGATATTACTTACCGAGAGTGCATATTTCCCGAAAGGAATGCGTTCTTCCGAAC ATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTGGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD087977             [                                      CATATTTCCCGAAAGGAATGCGTTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTGGTAATTCAGTGATTCATCCAGTAACACAGGCAAATT GGCGTGGATGTTTTCCAGAGCATCCTGCGGCATCCCGATGTGATATACCAGGAAATCGGTTTGTACGGAATCCGTGAGCTGAAAATCATTCAAGAGAATGCGGTACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTGNGATTTGTGACACGATAAGAACTGCCCCAATTGTTCGTGGNTCAGGTTGC                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD087827             [                                                                                                                                                                                                                                              AAAATCATTCAAGAGAATGCGTGACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTGGGATTTGTGACACGATAAGAACTGCCCCAATTGTTCGTGGTTCAGGTTGCGGACCCAGCGGGTTTCACCAGCGGGAATCGTCACCGATAAACCGTGGAAGATACTCATCAGCCGGAGGCGGTCATGTTCCTGCTCGTCGGTGAACTCAACCGTGTACAGGTCTGTTTTCGGATTGCTGGCAATGACTTCCGCCGCTAAACGTTTTTGTAAACTTTCTGCTGTTGCCATGGAAACTCCGCCCAATACCACGCTTGGCTCGTTGAGCAAAGTTGCAAGGATTCACTTTCGTTACAGCCCAGGAATTCCGAA                                               ]
[-] EMBL CD087868             [                                                                                                                                                                                                                                                                                                                                                                                                      AACCGTGGAAGATACTCATCAGCCGGAGGCGGTCATGTTCCTGCTCGTCGGTGAACTCAACCGTGTACAGGTCTGTNTTCGGATTGCTGGCAATGACTTCCGCCGCTAAACGTTTTTGTAAACTTTCTGCTGTTGCCATGGAAACTCCGCCCAATACCACGCTTGGCTCGTTGAGCAAAGTTGCAAGGATTCACTTTCGTTACAGCCCAGGAATTCCGTAAGCTGTTTGTTTACTTCTGTCAGTTTTACCGGATCGGTGATATAATC]




>consensus_9086#0
CGTTTTGGAGGAATCGGTGATATTACTTACCGAGAGTGCATATTTCCCGAAAGGAATGCG
TTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTG
GTAATTCAGTGATTCATCCAGTAACACAGGCAAATTGGCGTGGATGTTTTCCAGAGCATC
CTGCGGCATCCCGATGTGATTTACCAGGAAATCGGTTTGTACGGAATCCGTGAGCTGAAA
ATCATTCAAGAGAATGCGGTACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTG
GGATTTGTGACACGATAAGAACTGCCCCAATTGTTCGTGGTTCAGGTTGCGGACCCAGCG
GGTTTCACCAGCGGGAATCGTCACCGATAAACCGTGGAAGATACTCATCAGCCGGAGGCG
GTCATGTTCCTGCTCGTCGGTGAACTCAACCGTGTACAGGTCTGTTTTCGGATTGCTGGC
AATGACTTCCGCCGCTAAACGTTTTTGTAAACTTTCTGCTGTTGCCATGGAAACTCCGCC
CAATACCACGCTTGGCTCGTTGAGCAAAGTTGCAAGGATTCACTTTCGTTACAGCCCAGG
AATTCCGAAAGCTGTTTGTTTACTTCTGTCAGTTTTACCGGATCGGTGATATAATC

consensusID : consensus_9086#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 334
fasta sequence

                              [TCATAGTCTGTTTACCTGTAGTGAACCGAGAGTGCATATTTCCCGAAAGGAATGCGTTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTGGTAATTCAGTGATTCATCCAGTAACACAGGCAAATTGGCGTGGATGTTTTCCAGAGCATCCTGCGGCATCCCGATGTGATTTACCAGGAAATCGGTTTGTACGGAATCCGTGAGCTGAAAATCATTCAAGAGAATGCGGTACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTGNGATTTGTGACACGATAAGAACTGCCCCAATTGTTCGT]

[+] EMBL CD087928             [TCATAGTCTGTTTACCTGTAGTGAACCGAGAGTGCATATTTCCCGAAAGGAATGCGTTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTGGTAATTCAGTGATTCATCCAGTAACACAGGCAAATTGGCGTGGATGTTTTCCAGAGCATCCTGCGGCATCCCGATGTGATTTACCAGGAAATCGGTTTGTACGGAATCCGTGAGCTGAAAATCATTCAAGAGAATGCGGTACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTGNGATTTGTGACACGATAAGAACTGCCCCAATTGTTCGT]
[+] EMBL CD087929             [                                  CATATTTCCCGAAAGGAATGCGTTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTGGTAATTCAGTGATTCATCCAGTAACACAGGCAAATTGGCGTGGATGTTTTCCAGAGCATCCTGCGGCATCCCGATGTGATTTACCAGGAAATCGGTTTGTACGGAATCCGAGAGCTGAAAATCATTCAAGAGAATGCGGTACCGNGAATAGCTTTGATTGTAA                                                       ]




>consensus_9086#1
TCATAGTCTGTTTACCTGTAGTGAACCGAGAGTGCATATTTCCCGAAAGGAATGCGTTCT
TCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTGGTAA
TTCAGTGATTCATCCAGTAACACAGGCAAATTGGCGTGGATGTTTTCCAGAGCATCCTGC
GGCATCCCGATGTGATTTACCAGGAAATCGGTTTGTACGGAATCCGTGAGCTGAAAATCA
TTCAAGAGAATGCGGTACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTGNGAT
TTGTGACACGATAAGAACTGCCCCAATTGTTCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9086#0      CGTTTTGGAGGAATCGGTGATATTACTTACCGAGAGTGCATATTTCCCGAAAGGAATGCG 60
consensus_9086#1      --TCATAGTCTGTTTACCTGTAGTG--AACCGAGAGTGCATATTTCCCGAAAGGAATGCG 56
                        *  * *     *      ** *    ********************************

consensus_9086#0      TTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTG 120
consensus_9086#1      TTCTTCCGAACAATTCAGGCCGGCTTGGCGGTAGATTTCCAGTTTTTCCCGGAGTGTGTG 116
                      ************************************************************

consensus_9086#0      GTAATTCAGTGATTCATCCAGTAACACAGGCAAATTGGCGTGGATGTTTTCCAGAGCATC 180
consensus_9086#1      GTAATTCAGTGATTCATCCAGTAACACAGGCAAATTGGCGTGGATGTTTTCCAGAGCATC 176
                      ************************************************************

consensus_9086#0      CTGCGGCATCCCGATGTGATTTACCAGGAAATCGGTTTGTACGGAATCCGTGAGCTGAAA 240
consensus_9086#1      CTGCGGCATCCCGATGTGATTTACCAGGAAATCGGTTTGTACGGAATCCGTGAGCTGAAA 236
                      ************************************************************

consensus_9086#0      ATCATTCAAGAGAATGCGGTACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTG 300
consensus_9086#1      ATCATTCAAGAGAATGCGGTACCGGGAATAGCTTTGATTGTAAATCCGGATTCCTGCCTG 296
                      ************************************************************

consensus_9086#0      GGATTTGTGACACGATAAGAACTGCCCCAATTGTTCGTGGTTCAGGTTGCGGACCCAGCG 360
consensus_9086#1      NGATTTGTGACACGATAAGAACTGCCCCAATTGTTCGT---------------------- 334
                       *************************************                      

consensus_9086#0      GGTTTCACCAGCGGGAATCGTCACCGATAAACCGTGGAAGATACTCATCAGCCGGAGGCG 420
consensus_9086#1      ------------------------------------------------------------
                                                                                  

consensus_9086#0      GTCATGTTCCTGCTCGTCGGTGAACTCAACCGTGTACAGGTCTGTTTTCGGATTGCTGGC 480
consensus_9086#1      ------------------------------------------------------------
                                                                                  

consensus_9086#0      AATGACTTCCGCCGCTAAACGTTTTTGTAAACTTTCTGCTGTTGCCATGGAAACTCCGCC 540
consensus_9086#1      ------------------------------------------------------------
                                                                                  

consensus_9086#0      CAATACCACGCTTGGCTCGTTGAGCAAAGTTGCAAGGATTCACTTTCGTTACAGCCCAGG 600
consensus_9086#1      ------------------------------------------------------------
                                                                                  

consensus_9086#0      AATTCCGAAAGCTGTTTGTTTACTTCTGTCAGTTTTACCGGATCGGTGATATAATC 656
consensus_9086#1      --------------------------------------------------------