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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9088#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 825 fasta sequence
[CGAGGCCAAAAATTCGGCACGAGGGATCGTTCCATCATGCCACTAACATTTGAACTTAGTCATGTTAATAGGTAAAGACTAACTGGTTTGACTCCACGTGATTATCTCAACCAATGGTTAGAGACTTTGAATGACATGGATGAAAATCGTTTGCAATGTTGCATGTTCATCCACTCCTAGTTTTTCTTCAAATTCTGAGATTCTAAATTCCTCGCAACTAGTTTTTTGTGTTTTTATTTCATTAATTGATATTTTCTTTTTGAGTCGTATCTTCAGTGCCTTATCTTTCCTATTACCTGTGATACTGTTACCTACTCTACTGTTCTGGGATTTGGTCTAAAAACTTCATCTCTGTGCTAATGAGGCATGGCAACCTGAACCTGTGTACGCACGTACAGATTGTACGTTGTGACTGATTAACTGAGCCGATGTAGCTTGACTGAGTCGTTAGGAAGATCGAGCACGACCACCACATCAAAGTTACAGCTACGGTCGGATCAATAAGTACCGTAACTTCCCATAGAGTTTGTAATATAAGAATCAATATTGATTATGCTTTTCTATTGACTTGTATTTATGGTAAAGATCACGTAATTTTTTTCATTCGTAGTTTCATATTTTCGCTGGTGATGTTGTATTATTTGAGTCGTATTTCTCATGAAGTTTATCAAAGTAACGAGCAAGTCACCACAAGCAGCTCATCGAGAAAGAAAAAATGATAAAATTCCCGATTTGTTTCCAACTAGTAGTATTTTTTCCAAGTTATTTTTTTAATCTCTTGATGTACACTTAGTATTTGGAGTGTAAAGTTGCAATAAATATTTT]
[+] EMBL CD080425 [CGAGGCCAAAAATTCGGCACGAGGGATCGTTCCATCATGCCACTAACATTTGAACTTAGTCATGTTAATAGGTAAAGACTAACTGGTTTGACTCCACGTGATTATCTCAACCAATGGTTAGAGACTTTGAATGACATGGATGAAAATCGTTTGCAATGTTGCATGTTCATCCACTCCTAGTTTTTCTTCAAATTCTGAGATTCTAAATTCCTCGCAACTAGTTTTTTGTGTTTTTATTTCATTAATTGATATTTTCTTTTTGAGTCGTATCTTCAGTGCCTTATCTTTCCTATTACCTGTGATACTGTTACCTACTCTACTGTTCTGGGATTTGGTCTAAAAACTTCATCTCTGTGCTAATGAGGCATGGCAACCTGAACCTGTGTACGCACGTACAGATTGTACGTTGTGACTGATTAACTGAGCCGATGTAGCTTGACTGAGTCGTTAGGAAGATCGAGCACGACCACCACATCAAAGTTACAGCTACGGTCGGATCAATAAGTACCGTAACTTCCCATAGAGTTTGTAATATAAGAATCAATATTGATTATGCTTTTCTATTGACTTGTATTTATGGTAAAGATCACGTAATTTTTTTCATTCGTAGTTTCATATTTTCGCTGGTGATGTTGTATTATTTGAGTCGTATTTCTCATGAAGTTTATCAAAGTAACGAGCAAGTCACCACAAGCAGCTCATCGAGAAAGAANAAATGATAAAATCCCCGATTTGTTTCCAACTAGTAGTATTTTTTCCCAGTTATTTTTTTAATCTCTTGATGTCCACTTAGTATTTGGAGTGTAAAGTTGCAATAAATATTT ]
[-] EMBL CD074517 [ gTGCATGTTCATCCACTCCTAG TTTTCTTCAAATTCTGAGATTCTAAATTCCTCGCAACTAGTTTTTTGTGTTTTTATTTCATTAATTGATATTTTCTTTTTGAGTCGTATCTTCAGTGCCTTATCTTTCCTATTACCTGTGATACTGTTACCTACTCTACTGTTCTGGGATTTGGTCTAAAAACTTCATCTCTGTGCTAATGAGGCATGGCAACCTGAACCTGTGTACGCACGTACAGATTGTACGTTGTGACTGATTAACTGAGCCGATGTAGCTTGACTGAGTCGTTAGGAAGATCGAGCACGACCACCACATCAAAGTTACAGCTACGGTCGGATCAATAAGTACCGTAACTTCCCATAGAGTTTGTAATATAAGAATCAATATTGATTATGCTTTTCTATTGACTTGTATTTATGGTAAAGATCACGTAATTTTTTTCATTCGTAGTTTCATATTTTCGCTGGTGATGTTGTATTATTTGAGTCGTATTTCTCATGAAGTTTATCAAAGTAACGAGCAAGTCACCACAAGCAGCTCATCGAGAAAGAAAAAATGATAAAATTCCCGATTTGTTTCCAACTAGTAGTATTTTTTCCAAGTTATTTTTTTAATCTCTTGATGTACACTTAGTATTTGGAGTGTAAAGTTGCAATAAATATTTT]
[-] EMBL CD074338 [ AATTCCTCGCAACTAGTTTTTTGTGTTTTTATTTCATTAATTGATATTTTCTTTNTGAGTCGTATCTTCAGTGCCTTATCTTTCCTATTACCTGTGATACTGTTACCTACTCTACTGTTCTGGGATTTGGTCTAAAAACTTCATCTCTGTGCTAATGAGGCATGGCAACCTGAACCTGTGTACGCACGTACAGATTGTACGTTGTGACTGATTAACTGAGCCGATGTAGCTTGACTGAGTCGTTAGGAAGATCGAGCACGACCACCACATCAAAGTTACAGCTACGGTCGGATCAATAAGTACCGTAACTTCCCATAGAGTTTGTAATATAAGAATCAATATTGATTATGCTTTTCTATTGACTTGTATTTATGGTAAAGATCACGTAATTTTTTTCATTCGTAGTTTCATATTTTCGCTGGTGATGTTGTATTATTTGAGTCGTATTTCTCATGAAGTTTATCAAAGTAACGAGCAAGTCACCACAAGCAGCTCATCGAGAAAGAAAAAATGATAAAATTCCCGATTTGTTTCCAACTAGTAGTATTTTTTCCAAGTTATTTTTTTAATCTCTTGATGTACACTTAGTATTTGGAGTGTAAAGTTGCAATAAATATTTT]
[-] EMBL CD096118 [ AGTTTTTTGTGTTTTTATTTCATTAATTGATATTTTCTTTTTGAGTCCTATCTTCAGTGCCTTATCTTTCCTATTACCTGTGATACTGTTACCTACTCTACTGTTCTGGGATTTGGTCTAAAAACTTCATCTCTGTGCTAATGAGGCATGGCAACCTGAACCTGTGTACGCACGTACAGATTGTACGTTGTGACTGATTAACTGAGCCGATGTAGCTTGACTGAGTCGTTAGGAAGATCGAGCACGACCACCACACCAAAGTTACAGCTACGGTCGGATCAATAAGTACCGTAACTTCCCATAGAGTTTGTAATATAAGAATCAATATTGATTATGCTTTTCTATTGACTTGTATTTATGGTAAAGATCACGTAATTTTTTTCATTCGTAGTTc ]
consensusID : consensus_9088#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 458 fasta sequence
[GGCCCGCGGGAATTGAATTAGCCTTTTTGTCCCCCA-GCACAAGGATGGTGCTGAAGTCTGGAGCTTCGTCGTTTATGTCTTTGTTGTTGTTACTTGTAGTGTTCGCAGCTATGCGGCTGTTTGCAGAAACGTTATCTTCTTCACAAATTTTGACAATCTTTGGTGGATTTTTCGGGAGTTTAATTTTCGTCCTATTAATAACGTTTGTAAATAATTTCGAAAGAACACTTTTTGGTGATGAGTTTTGTTCCGGACTCTTTCCTGAAGTGGCCATATGCATTTTTATTGCCTGTTCTTTCTCTGCGACTGTACATCGGGTGTGCGGCACGACATGTTTCATATTTTCGCGTGGTGATGTTGTATTATCTGATTCGTATTTCTCATGAAGTTTATCAAAGTAACGAGCAAGTCACCACAAGCAGCTCATCGAGAAAGAAAAAATGATATTATTCCCGATT]
[-] EMBL CD162717 [GGCCCGCGGGAATTGAATTAGCCTTTTTGTCCCCCA GCACAAGGATGGTGCTGAAGTCTGGAGCTTCGTCGTTTATGTCTTTGTTGTTGTTACTTGTAGTGTTCGCAGCTATGCGGCTGTTTGCAGAAACGTTATCTTCTTCACAAATTTTGACAATCTTTGGTGGATTTTTCGGGAGTTTAATTTTCGTCCTATTAATAACGTTTGTAAATAATTTCGAAAGAACACTTTTTGGTGATGAGTTTTGTTCCGGACTCTTTCCTGAAGTGGCCATATGCATTTTTATTGCCTGTTCTTTCTCTGCGACTGTACATCGGGTGTGCGGCACGACATGTTTC ]
[-] EMBL CD162980 [ aAATTG ATTAAACCTTTTGGCCCCCAGGCACAAGGATGGTGCTGAAGTCTGGAGCTTCGTCGTTTATGTCTTTGTTGTTGTTACTTGTAGTGTTCGCAGCTATGCGGCTGTTTGCAGAAACGTTATCTTCTTCACAAATTTTGACAATCTTTGGTGGATTTTTCGGGAGTTTAATTTTCGTCCTATTAATAACGTTTGTAAATAATTTCGAAAGAACACTTTTTGGTGATGAGTTTTGTTCCGGACTCTTTCCTGAAGTGGCCATATGCATTTTTATTGCCTGTTCTTTCTCTGCGACTGTACATCGGGTGTGCGGCACGACATGTTTC ]
[-] EMBL CD134280 [ CTTTTTGGTGATGAGTTTTGTTCCGGAGTCTTTCCTGAAGTGGCCATATGCATTGTTATTGCCTGTTCTTTCTCTGCGACTATACATCGGGTGTGCGGCACGACATGTTTCATATTTTCGCGTGGTGATGTTGTATTATCTGATTCGTATTTCTCATGAAGTTTATCAAAGTAACGAGCAAGTCACCACAAGCAGCTCATCGAGAAAGAAAAAATGATATTATTCCCGATT]
consensusID : consensus_9088#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence
[GAAACATGTCGTGCCGCACACCCGATGTACAGTCGCAGAGAAAGAACAGGCAATAAAAATGCATATGGCCACTTCAGGAAAGAGTCCGGAACAAAACTCATCACCAAAAAGTGTTCTTTCGAAATTATTTACAAACGTTATTAATAGGACGAAGATTAAACTCCCGAAAAATCCACCAAAGATTGTCAAAATTTGTGAAGAAGATAACGTTTCTGCAAACAGCCGCATAGCTGCGAACACTACAAGTAACAACAACAAAGACATAAACGACGAAGCTCCAGACTTCAGCACCATCCTTGTGCGCTACGTCAATG]
[+] EMBL CD162870 [GAAACATGTCGTGCCGCACACCCGATGTACAGTCGCAGAGAAAGAACAGGCAATAAAAATGCATATGGCCACTTCAGGAAAGAGTCCGGAACAAAACTCATCACCAAAAAGTGTTCTTTCGAAATTATTTACAAACGTTATTAATAGGACGAAGATTAAACTCCCGAAAAATCCACCAAAGATTGTCAAAATTTGTGAAGAAGATAACGTTTCTGCAAACAGCCGCATAGCTGCGAACACTACAAGTAACAACAACAAAGACATAAACGACGAAGCTCCAGACTTCAGCACCATCCTTGTGCGCTACGTCAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9088#0 CGAGGCCAAAAATTCGGCACGAGGGATCGTTCCATCATGCCACTAACATTTGAACTTAGT 60
consensus_9088#1 ------------------------------------------------------------
consensus_9088#2 ------------------------------------------------------------
consensus_9088#0 CATGTTAATAGGTAAAGACTAACTGGTTTGACTCCACGTGATTATCTCAACCAATGGTTA 120
consensus_9088#1 ------------------------------------------------------------
consensus_9088#2 ------------------------------------------------------------
consensus_9088#0 GAGACTTTGAATGACATGGATGAAAATCGTTTGCAATGTTGCATGTTCATCCACTCCTAG 180
consensus_9088#1 ------------------------------------------------------------
consensus_9088#2 ------------------------------------------------------------
consensus_9088#0 TTTTTCTTCAAATTCTGAGATTCTAAATTCCTCGCAACTAGTTTTTTGTGTTTTTATTTC 240
consensus_9088#1 -----------------------------------------------------GGCCCGC 7
consensus_9088#2 ------------------------------------------------------------
consensus_9088#0 ATTAATTGATATTTTCTTTTTGAGTCGTATCTTCAGTGCCTTATCTTTCCTATTACCTGT 300
consensus_9088#1 GGGAATTGAATTAGCCTTTTTGT------CCCCCAGCACAAGGATGGTGCTGAAGTCTGG 61
consensus_9088#2 ------------------------------------------------------------
consensus_9088#0 GATACTGTTACCTACTCTACTGTTCTGGGATTTGGTCTAAAAACTTCATCTCTGTGCTAA 360
consensus_9088#1 AGCTTCGTCGTTTATGTCTTTGTTGTTG----TTACTTGTAGTGTTCGCAGCTATGCGGC 117
consensus_9088#2 ------------------------------------------------------------
consensus_9088#0 TGAGGCATGGCAACCTGAACCTGTGTACGCACGTACAGATTGTACGTTGTGACTGATTAA 420
consensus_9088#1 TGTT-TGCAGAAACGTTATCTTCTTCACAAATTT-----TGACAATCTTTGGTGGATTTT 171
consensus_9088#2 ------------------------------------------------------------
consensus_9088#0 CTGAGCCGATGTAGCTTGACTGAGTCGTTAGGAAGATCGAGCACGACCACCACATCAAAG 480
consensus_9088#1 TCGGG-------AGTTTAATT--TTCGTCCTATTAATAACGTTTGTAAATAATTTCGAAA 222
consensus_9088#2 ----------------GAAACATGTCGTGCCGCACACCCGATGT-ACAGTCGCAGAGAAA 43
* **** * **
consensus_9088#0 TTACAGCTACGGTCGGATCAATAAGTACCGTAACTTCCCATAGAGTTTGTAATATAAG-A 539
consensus_9088#1 GAACACTTTTTGGTGATGAGTTTTGTTCCGGACTCTTTCCTGAAGTG---GCCATATG-C 278
consensus_9088#2 GAACAGGCAATAAAAATGCATATGGC----CACTTCAGGAAAGAGTCCGGAACAAAACTC 99
*** * * *** * *
consensus_9088#0 ATCAATATTGATTATGCTTTTCTATTGACTTGTATTTATGGTAAAGATCACGTAATTTTT 599
consensus_9088#1 ATTTTTATTGCCTGTTCTTTCTCTGCGACT-GTACATCGGGTGTGCGGCACGACAT---- 333
consensus_9088#2 ATCACCAAAAAGTGTTCTTTCGAAATTATTTACAAACGTTATTAATAGGACGAAGATTA- 158
** * * * **** * * * * ***
consensus_9088#0 TTCATTCGTAGTTTCATATTTTCGC-TGGTGATGTTGTATTATTTGAGTCGTAT----TT 654
consensus_9088#1 ----------GTTTCATATTTTCGCGTGGTGATGTTGTATTATCTGATTCGTAT----TT 379
consensus_9088#2 -------AACTCCCGAAAAATCCACCAAAGATTGTCAAAATTTGTGAAGAAGATAACGTT 211
* * * * * *** * * * *** ** **
consensus_9088#0 CTCATGAAGTTTATCAAAGTAACGAGCAAGTCACCACAAGCAGCTCATCGAGAAAGAAA- 713
consensus_9088#1 CTCATGAAGTTTATCAAAGTAACGAGCAAGTCACCACAAGCAGCTCATCGAGAAAGAAA- 438
consensus_9088#2 TCTGCAAACAGCCGCATAGCTGCGAACA-----CTACAAGTAAC--AACAACAAAGACAT 264
** ** ** *** ** * ***** * * * * * ***** *
consensus_9088#0 AAATGATAAAATTCCCGATTTGTTTCCAACTAGTAGTATTTTTTCCAAGTTATTTTTTTA 773
consensus_9088#1 AAATGATATTATTCCCGATT---------------------------------------- 458
consensus_9088#2 AAACGACGAAGCTCCAGACTTCAGCACCATCCTTGTGCGCTACGTCAATG---------- 314
*** ** *** ** *
consensus_9088#0 ATCTCTTGATGTACACTTAGTATTTGGAGTGTAAAGTTGCAATAAATATTTT 825
consensus_9088#1 ----------------------------------------------------
consensus_9088#2 ----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||