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Schistosoma mansoni
cluster # 9093 cluster # 9093       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9093#0 length = 933 sequences # 4  
consensus_9093#1 length = 495 sequences # 4  

consensusID : consensus_9093#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 933
fasta sequence
                              [GCGACTAAATAGATGACGTAAGCCAAGAAGCTCATATATGGAATTCATACTTACTTATTAGAGATTAATTCTCCAGCATAAGTGGCACTGGCACGATAAGTGCCACCTGAAGTTATCATAGATGAATTATCTGAGTCTTTGAAGTTTTTTGCATTCGTCTTACAATCTTCCATACGATTATTAGCAAGTTTAAACCATGCTATAGCTTTGCCATAAACTTTATTTTCTTCTTCATTTATGCCGGCATAATAAGCCGTTAACGATGAATAAAAACTAGTCTTTATTTGACACAGGCGACAGCTATGTTTTAGAATATTTTGGGAGAACTATTTTATCATTAGACTCAAACCCTAACAGTTGGGCACCAACATTTTCGTAAACCTCCATAATGTACTGAGACAATTTAGCAGTCACATTAGCTGGCCTGTTATCCAGTATAGACTTTTCTACAACACATTCTTGAGCTTGTGCTAGCATCAATGACCCAAAGAGTAGCATGAGCTCACTGGTCAAATCAGTTGCACCTGATACAGGTAGATGACGCTCGACTAGTGTATTTAGAGCCCAAGAAGCGCATTGAGAATGCGTACAAGCAATTTTCATACTATCTGCATCCGCTCTCTTCTCCTTGACACCCAAAATAGAATGAAGGGCGGCGATGTTATACATTACGGATGCTTCTTCAAAACGAATATCCGAAGACTCCAAAAGACAATCGGAAAAAATGTCTTGCCATTTCCATGTTACATCTGTACACGTTGCGGCGGAAAAATGAAACCTGCCTTTAAGTAGCTGCAGTTGAGCATAATACCGTTTCAGTTGAGAAAGTCCAGTGTAATCGACAGAAGGTTCACAGGCATATTTTCGTAAGCTAAGGAAACTATTGAATTCCTTCTCGAAGAGACTGGGAGATTGTTGATATTGCGCTTCGAT]

[+] EMBL CD087894             [GCGACTAAATAGATGACGTAAGCCAAGAAGCTCATATATGGAATTCATACTTACTTATTAGAGATTAATTCTCCAGCATAAGTGGCACTGGCACGATAAGTGCCACCTGAAGTTATCATAGATGAATTATCTGAGTCTTTGAAGTTTTTTGCATTCGTCTTACAATCTTCCATACGATTATTAGCAAGNTTAAACCATGCTATAGCTNTGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD087946             [ CGACTAAATAGATGACGTAA CCAAGAAGCTCATATATGG ATTCATAC TAC TATTAGAGATTAA TCTCCAGCATAAGTGGCACTGGCACGATAAGTGCCACCTGAAGTCATCATAGATGAATTATCTGAGTCTTTGAAGTTTTTTGCATTCGTCTTACAATCTTCCATACGATTATTAGCAAGTTTAAACCATGCTATAGCTTTGCCATAAACTTTATTTTCTTCTTCATTTATGCCGGCATAATAAGCCGTTAACGATGAATAAAAACTAGTCTTTATTTGACACAGGCGACAGCTATGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD201641             [                                                                                                                                                TTTTTTGCATTCGTCTTACAATCTTCCATACGATTATTAGCAAGTTTAAACCATGCTATAGCTTTGCCATAAACTTTATTTTCTTCTTCATTTATGCCGGCATAATAAGCCGTTAACGATGAATAAAAACTAGTCTTTATTTGACATCGACGAC GCCATTCTTTAGAATATTTTGGGAGAACTATTTTATCATTAGACTCAAACCCTAACAGTTGGGCACCAACATTTTCGTAAACCTCCATAATGTACTGAGACAATTTAGCAGTCACATTAGCTGGCCTGTTATCCAGTATAGACTTTTCTACAACACATTCTTGAGCTTGTGCTAGCATCAATGACCCAAAGAGTAGCATGAGCTCACTGGTCAAATCAGTTGCACCTGATACAGGTAGATGACGCTCGACTAGTGTATTTAGAGCCCAAGAAGCGCATTGAGAATGCGTACAAGCAATTTTCATACTATCTGCATCCGCTCTC                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD132020             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTGCACCTGATACAGGTAGATGACGCTCGACTAGTGTATTTAGAGCCCAAGAAGCGCATTGAAAATGCGTACAAGCAATTTTCATACTATCTGCATCCGCTCTCTTCTCCTTGACACCCAAAATAGAATGAAGGGCGGCGATGTTATACATTACGGATGCTTCTTCAAAACGAATATCCGAAGACTCCAAAAGACAATCGGAAAAAATGTCTTGCCATTTCCATGTTACATCTGTACACGTTGCGGCGGAAAAATGAAACCTGCCTTTAAGTAGCTGCAGTTGAGCATAATACCGTTTCAGTTGAGAAAGTCCAGTGTAATCGACAGAAGGTTCACAGGCATATTTTCGTAAGCTAAGGAAACTATTGAATTCCTTCTCGAAGAGACTGGGAGATTGTTGATATTGCGCTTCGAT]


>consensus_9093#0 GCGACTAAATAGATGACGTAAGCCAAGAAGCTCATATATGGAATTCATACTTACTTATTA GAGATTAATTCTCCAGCATAAGTGGCACTGGCACGATAAGTGCCACCTGAAGTTATCATA GATGAATTATCTGAGTCTTTGAAGTTTTTTGCATTCGTCTTACAATCTTCCATACGATTA TTAGCAAGTTTAAACCATGCTATAGCTTTGCCATAAACTTTATTTTCTTCTTCATTTATG CCGGCATAATAAGCCGTTAACGATGAATAAAAACTAGTCTTTATTTGACACAGGCGACAG CTATGTTTTAGAATATTTTGGGAGAACTATTTTATCATTAGACTCAAACCCTAACAGTTG GGCACCAACATTTTCGTAAACCTCCATAATGTACTGAGACAATTTAGCAGTCACATTAGC TGGCCTGTTATCCAGTATAGACTTTTCTACAACACATTCTTGAGCTTGTGCTAGCATCAA TGACCCAAAGAGTAGCATGAGCTCACTGGTCAAATCAGTTGCACCTGATACAGGTAGATG ACGCTCGACTAGTGTATTTAGAGCCCAAGAAGCGCATTGAGAATGCGTACAAGCAATTTT CATACTATCTGCATCCGCTCTCTTCTCCTTGACACCCAAAATAGAATGAAGGGCGGCGAT GTTATACATTACGGATGCTTCTTCAAAACGAATATCCGAAGACTCCAAAAGACAATCGGA AAAAATGTCTTGCCATTTCCATGTTACATCTGTACACGTTGCGGCGGAAAAATGAAACCT GCCTTTAAGTAGCTGCAGTTGAGCATAATACCGTTTCAGTTGAGAAAGTCCAGTGTAATC GACAGAAGGTTCACAGGCATATTTTCGTAAGCTAAGGAAACTATTGAATTCCTTCTCGAA GAGACTGGGAGATTGTTGATATTGCGCTTCGAT



consensusID : consensus_9093#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 495
fasta sequence
                              [GTCCACTATAACATCGCCGCCCTTCATTCTATTTTGGGTGTCAAGGAGAAGAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTTGTAGTTTTTTACGGCTTATCCAGAAACGGGCGTATTACAATCTACAATGTTCTGACAGTTTTCTGTACTGATACGTCCGGTTTTCTGTGGTAATTTTTAGTTAGAAATCACAAGACTTAAGGTGCGTATAGACGGATTTAAAGTTTTCTTCTGGCTGACCTTCACATTAAAAAAATGTAAACATACTAAATAAGGAAAGTGCAAGTGAAAAAAGTAGAACGTCTACCGTCCAAATCTGTAAATATCTTTGACTAACGTTTAGTTGTCCGTGGGTGCAGAATTTAAAAACTTAACTGCACATAAGATGAGGAGACACTTAGAATTATAAGTAGCTAGCTGACGATTACGCAGTGCCAGAACTGTGCAATATGGGGCCTAAAAGTACTAAAAAAGACAATCAGAT]

[+] EMBL CD089480             [GTCCACTATAACATCGCCGCCCTTCATTCTATTTTGGGTGTCAAGGAGAAGAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTTGTAGTTTTTTACGGCTTATCCAGAAACGGGCGTATTACAATCTACAATGTTCTGACAGTTTTCTGTACTGATACGTCCGGTTTTCTGTGGTAATTTTTAGTTAGAAATCACAAGACTTAAGGTGCGTATAGACGGATTTAAAGTTTTCTTCTGGCTGACCTTCACATTAAAAAAATGTAAACATACTAAATAAGGAAAGTGCAAGTGAAAAAAGTAGAACGTCTACCGTCCAAATCTGTAAATATCTTTGACTAACGTTTAGTTGTCCGTGGGTGCAGAATTTAAAAACTTAACTGCACATAAGATGAGGAGACACTTAGAATTATAAGTAGCTAGCTGACGATTACGCAGTGCCAGAACTGTGCAATATGGGGCCTAAAAGTACTAAAAAAGACAATCAGAT]
[+] EMBL CD089532             [GTCCACTATAACATCGCCGCCCTTCATTCTATTTTGGGTGTCAAGGAGAAGAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTTGTAGTTTTTTACGGCTTATCCAGAAACGGGCGTATTACAATCTACAATGTTCTGACAGTTTTCTGTACTGATACGTCCGGTTTTCTGTGGTAATTTTTAGTTAGAAATCACAAGACTTAAGGTGCGTATAGACGGATTTAAAGTTTTCTTCTGGCTGACCTTCACATTAAAAAAATGTAAACATACTAAATAAGGAAAGTGCAAGTGAAAAAAGTAGAACGTCTACCGTCCAAATCTGTAAATATCTTTGACTAACGTTTAATTGTCCG                                                                                                                                      ]
[+] EMBL CD089551             [               GCCGCCCTTCATTCTATTTTGGGTGTCAAGGAGAAGAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTTGTAGTTTTTTACGGCTTATCCAGAAACGGGCGTATTACAATCTACAATGTTCTGACAGTTTTCTGTACTGATACGTCCGGTTTTCTGTGGTAATTTTTAGTTAGAAATCACAAGACTTAAGGTGCGTATAGACGGATTTAAAGTTTTCTTCTGGCTGACCTTCACATTAAAAAAATGTAAACATACTAAATAAGGAAAGTGCAAGTGAAAAAAGTAGAACGTCTACCGTCCAAATCTGTAAATATCTTTGACTAACGTTTAGTTGTCCGTGGGAGCAGAATTTAAAAACT                                                                                                                 ]
[+] EMBL CD089506             [                                    GGTGTCAAGGAGAACAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTTGTAGTTTTTTACGGCTTATCCAGAAACGGGCGTATTACAATCTACAATGTTCTGACAGTTCTCTGTACTGATACGTCCGGTTTTCTGTGGTAATTTTTAGTTAGAAATCACAACAC                                                                                                                                                                                                                                                                                               ]


>consensus_9093#1 GTCCACTATAACATCGCCGCCCTTCATTCTATTTTGGGTGTCAAGGAGAAGAGAGCGGAT GCAGATGTAAGCTTATTTTGTTGCTTGACGTTGTAGTTTTTTACGGCTTATCCAGAAACG GGCGTATTACAATCTACAATGTTCTGACAGTTTTCTGTACTGATACGTCCGGTTTTCTGT GGTAATTTTTAGTTAGAAATCACAAGACTTAAGGTGCGTATAGACGGATTTAAAGTTTTC TTCTGGCTGACCTTCACATTAAAAAAATGTAAACATACTAAATAAGGAAAGTGCAAGTGA AAAAAGTAGAACGTCTACCGTCCAAATCTGTAAATATCTTTGACTAACGTTTAGTTGTCC GTGGGTGCAGAATTTAAAAACTTAACTGCACATAAGATGAGGAGACACTTAGAATTATAA GTAGCTAGCTGACGATTACGCAGTGCCAGAACTGTGCAATATGGGGCCTAAAAGTACTAA AAAAGACAATCAGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9093#0      GCGACTAAATAGATGACGTAAGCCAAGAAGCTCATATATGGAATTCATACTTACTTATTA 60
consensus_9093#1      ------------------------------------------------------------
                                                                                  

consensus_9093#0      GAGATTAATTCTCCAGCATAAGTGGCACTGGCACGATAAGTGCCACCTGAAGTTATCATA 120
consensus_9093#1      ------------------------------------------------------------
                                                                                  

consensus_9093#0      GATGAATTATCTGAGTCTTTGAAGTTTTTTGCATTCGTCTTACAATCTTCCATACGATTA 180
consensus_9093#1      ------------------------------------------------------------
                                                                                  

consensus_9093#0      TTAGCAAGTTTAAACCATGCTATAGCTTTGCCATAAACTTTATTTTCTTCTTCATTTATG 240
consensus_9093#1      -------------------------GTCCACTATAACATCGCCGCCCTTCAT--TCTATT 33
                                                *   * ****  *       **** *  * *** 

consensus_9093#0      CCGGCATAATAAGCCGTTAACGATGAATAAAAAC-TAGTCTTTATTTGACACAGGCGACA 299
consensus_9093#1      TTGG-GTGTCAAGGAGAAGAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTT 92
                        **  *   ***  *   *    * **  * *  **  ***  ****   *  *     

consensus_9093#0      GCTATGTTTTAGAATATTTTGGGAGAACTATTTTATCATTAGACTCAA-ACCCTAACAGT 358
consensus_9093#1      GTAGTTTTTTACGGCTTATCCAGA-AACGGGCGTATTACAATCTACAATGTTCTGACAGT 151
                      *   * *****     * *   ** ***     *** *  *    ***    ** *****

consensus_9093#0      TGG--GCACCAACATTTTCGTAAACCTCCATAATGTACTGAGACAATTTAGCAGTCACAT 416
consensus_9093#1      TTTCTGTACTGATACGTCCG--GTTTTCTGTGGTAATTT----TTAGTTAGAAATCACAA 205
                      *    * **  * *  * **      **  *  *    *      * **** * ***** 

consensus_9093#0      TAGCTGGCCTGTTATCCAGTATAGACTTTTCTACAACACATTCTTGAGCTTGTGCTAGCA 476
consensus_9093#1      GACTTAAGGTGC------GTATAGACGGATTTAAAGTTTTCTTCTG-GCTGACCTTCACA 258
                       *  *    **       ********   * ** *      *  ** ***     *  **

consensus_9093#0      TCAATGACCCAAAGAGTAGCATGAGCTCACTGGTCAAATCAGTTGCACCTGATACAGGTA 536
consensus_9093#1      TTAAAAA----------AATGTAAACATACTAAATAAGGAAAGTGCAAGTGAAAAAAGTA 308
                      * **  *          *   * * *  ***    **   *  ****  *** * * ***

consensus_9093#0      GA-TGACGCTCGACTAGTGTATTTAGAGCCCAAGAAGCGCATTGAGA-ATGCGTACAAGC 594
consensus_9093#1      GAACGTCTACCGTCCAAATCTGTAAATATCTTTGACTAACGTTTAGTTGTCCGTGGGTGC 368
                      **  * *   ** * *      * *    *   **    * ** **   * ***    **

consensus_9093#0      AATTTTCATACTATCTGCATCCGCTCTCTTCTCCTTGACACCCAAAATAGAATGAAGGGC 654
consensus_9093#1      AGAATTTA-AAAACTTAACTGCACATAAGATGAGGAGACACTTAGAATTATAAGTAGCTA 427
                      *   ** * *  *  *   * * *            *****  * ***   * * **   

consensus_9093#0      GGCGATG-TTATACATTACGGATGCTTCTTCAAAACGAATATCCGAAGACTCCAAAAGAC 713
consensus_9093#1      GCTGACGATTACGCAGTGCCAGAACTGTGCAATATGGGGCCTAAAAGTACTAAAAAAGAC 487
                      *  ** * ***  ** * *     **     * *  *    *   *  ***  *******

consensus_9093#0      AATCGGAAAAAATGTCTTGCCATTTCCATGTTACATCTGTACACGTTGCGGCGGAAAAAT 773
consensus_9093#1      AATCAGAT---------------------------------------------------- 495
                      **** **                                                     

consensus_9093#0      GAAACCTGCCTTTAAGTAGCTGCAGTTGAGCATAATACCGTTTCAGTTGAGAAAGTCCAG 833
consensus_9093#1      ------------------------------------------------------------
                                                                                  

consensus_9093#0      TGTAATCGACAGAAGGTTCACAGGCATATTTTCGTAAGCTAAGGAAACTATTGAATTCCT 893
consensus_9093#1      ------------------------------------------------------------
                                                                                  

consensus_9093#0      TCTCGAAGAGACTGGGAGATTGTTGATATTGCGCTTCGAT 933
consensus_9093#1      ----------------------------------------
                                                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)