These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9093#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 933 fasta sequence [GCGACTAAATAGATGACGTAAGCCAAGAAGCTCATATATGGAATTCATACTTACTTATTAGAGATTAATTCTCCAGCATAAGTGGCACTGGCACGATAAGTGCCACCTGAAGTTATCATAGATGAATTATCTGAGTCTTTGAAGTTTTTTGCATTCGTCTTACAATCTTCCATACGATTATTAGCAAGTTTAAACCATGCTATAGCTTTGCCATAAACTTTATTTTCTTCTTCATTTATGCCGGCATAATAAGCCGTTAACGATGAATAAAAACTAGTCTTTATTTGACACAGGCGACAGCTATGTTTTAGAATATTTTGGGAGAACTATTTTATCATTAGACTCAAACCCTAACAGTTGGGCACCAACATTTTCGTAAACCTCCATAATGTACTGAGACAATTTAGCAGTCACATTAGCTGGCCTGTTATCCAGTATAGACTTTTCTACAACACATTCTTGAGCTTGTGCTAGCATCAATGACCCAAAGAGTAGCATGAGCTCACTGGTCAAATCAGTTGCACCTGATACAGGTAGATGACGCTCGACTAGTGTATTTAGAGCCCAAGAAGCGCATTGAGAATGCGTACAAGCAATTTTCATACTATCTGCATCCGCTCTCTTCTCCTTGACACCCAAAATAGAATGAAGGGCGGCGATGTTATACATTACGGATGCTTCTTCAAAACGAATATCCGAAGACTCCAAAAGACAATCGGAAAAAATGTCTTGCCATTTCCATGTTACATCTGTACACGTTGCGGCGGAAAAATGAAACCTGCCTTTAAGTAGCTGCAGTTGAGCATAATACCGTTTCAGTTGAGAAAGTCCAGTGTAATCGACAGAAGGTTCACAGGCATATTTTCGTAAGCTAAGGAAACTATTGAATTCCTTCTCGAAGAGACTGGGAGATTGTTGATATTGCGCTTCGAT] [+] EMBL CD087894 [GCGACTAAATAGATGACGTAAGCCAAGAAGCTCATATATGGAATTCATACTTACTTATTAGAGATTAATTCTCCAGCATAAGTGGCACTGGCACGATAAGTGCCACCTGAAGTTATCATAGATGAATTATCTGAGTCTTTGAAGTTTTTTGCATTCGTCTTACAATCTTCCATACGATTATTAGCAAGNTTAAACCATGCTATAGCTNTGCC ] [-] EMBL CD087946 [ CGACTAAATAGATGACGTAA CCAAGAAGCTCATATATGG ATTCATAC TAC TATTAGAGATTAA TCTCCAGCATAAGTGGCACTGGCACGATAAGTGCCACCTGAAGTCATCATAGATGAATTATCTGAGTCTTTGAAGTTTTTTGCATTCGTCTTACAATCTTCCATACGATTATTAGCAAGTTTAAACCATGCTATAGCTTTGCCATAAACTTTATTTTCTTCTTCATTTATGCCGGCATAATAAGCCGTTAACGATGAATAAAAACTAGTCTTTATTTGACACAGGCGACAGCTATGTTT ] [-] EMBL CD201641 [ TTTTTTGCATTCGTCTTACAATCTTCCATACGATTATTAGCAAGTTTAAACCATGCTATAGCTTTGCCATAAACTTTATTTTCTTCTTCATTTATGCCGGCATAATAAGCCGTTAACGATGAATAAAAACTAGTCTTTATTTGACATCGACGAC GCCATTCTTTAGAATATTTTGGGAGAACTATTTTATCATTAGACTCAAACCCTAACAGTTGGGCACCAACATTTTCGTAAACCTCCATAATGTACTGAGACAATTTAGCAGTCACATTAGCTGGCCTGTTATCCAGTATAGACTTTTCTACAACACATTCTTGAGCTTGTGCTAGCATCAATGACCCAAAGAGTAGCATGAGCTCACTGGTCAAATCAGTTGCACCTGATACAGGTAGATGACGCTCGACTAGTGTATTTAGAGCCCAAGAAGCGCATTGAGAATGCGTACAAGCAATTTTCATACTATCTGCATCCGCTCTC ] [+] EMBL CD132020 [ TTGCACCTGATACAGGTAGATGACGCTCGACTAGTGTATTTAGAGCCCAAGAAGCGCATTGAAAATGCGTACAAGCAATTTTCATACTATCTGCATCCGCTCTCTTCTCCTTGACACCCAAAATAGAATGAAGGGCGGCGATGTTATACATTACGGATGCTTCTTCAAAACGAATATCCGAAGACTCCAAAAGACAATCGGAAAAAATGTCTTGCCATTTCCATGTTACATCTGTACACGTTGCGGCGGAAAAATGAAACCTGCCTTTAAGTAGCTGCAGTTGAGCATAATACCGTTTCAGTTGAGAAAGTCCAGTGTAATCGACAGAAGGTTCACAGGCATATTTTCGTAAGCTAAGGAAACTATTGAATTCCTTCTCGAAGAGACTGGGAGATTGTTGATATTGCGCTTCGAT] consensusID : consensus_9093#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 495 fasta sequence [GTCCACTATAACATCGCCGCCCTTCATTCTATTTTGGGTGTCAAGGAGAAGAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTTGTAGTTTTTTACGGCTTATCCAGAAACGGGCGTATTACAATCTACAATGTTCTGACAGTTTTCTGTACTGATACGTCCGGTTTTCTGTGGTAATTTTTAGTTAGAAATCACAAGACTTAAGGTGCGTATAGACGGATTTAAAGTTTTCTTCTGGCTGACCTTCACATTAAAAAAATGTAAACATACTAAATAAGGAAAGTGCAAGTGAAAAAAGTAGAACGTCTACCGTCCAAATCTGTAAATATCTTTGACTAACGTTTAGTTGTCCGTGGGTGCAGAATTTAAAAACTTAACTGCACATAAGATGAGGAGACACTTAGAATTATAAGTAGCTAGCTGACGATTACGCAGTGCCAGAACTGTGCAATATGGGGCCTAAAAGTACTAAAAAAGACAATCAGAT] [+] EMBL CD089480 [GTCCACTATAACATCGCCGCCCTTCATTCTATTTTGGGTGTCAAGGAGAAGAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTTGTAGTTTTTTACGGCTTATCCAGAAACGGGCGTATTACAATCTACAATGTTCTGACAGTTTTCTGTACTGATACGTCCGGTTTTCTGTGGTAATTTTTAGTTAGAAATCACAAGACTTAAGGTGCGTATAGACGGATTTAAAGTTTTCTTCTGGCTGACCTTCACATTAAAAAAATGTAAACATACTAAATAAGGAAAGTGCAAGTGAAAAAAGTAGAACGTCTACCGTCCAAATCTGTAAATATCTTTGACTAACGTTTAGTTGTCCGTGGGTGCAGAATTTAAAAACTTAACTGCACATAAGATGAGGAGACACTTAGAATTATAAGTAGCTAGCTGACGATTACGCAGTGCCAGAACTGTGCAATATGGGGCCTAAAAGTACTAAAAAAGACAATCAGAT] [+] EMBL CD089532 [GTCCACTATAACATCGCCGCCCTTCATTCTATTTTGGGTGTCAAGGAGAAGAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTTGTAGTTTTTTACGGCTTATCCAGAAACGGGCGTATTACAATCTACAATGTTCTGACAGTTTTCTGTACTGATACGTCCGGTTTTCTGTGGTAATTTTTAGTTAGAAATCACAAGACTTAAGGTGCGTATAGACGGATTTAAAGTTTTCTTCTGGCTGACCTTCACATTAAAAAAATGTAAACATACTAAATAAGGAAAGTGCAAGTGAAAAAAGTAGAACGTCTACCGTCCAAATCTGTAAATATCTTTGACTAACGTTTAATTGTCCG ] [+] EMBL CD089551 [ GCCGCCCTTCATTCTATTTTGGGTGTCAAGGAGAAGAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTTGTAGTTTTTTACGGCTTATCCAGAAACGGGCGTATTACAATCTACAATGTTCTGACAGTTTTCTGTACTGATACGTCCGGTTTTCTGTGGTAATTTTTAGTTAGAAATCACAAGACTTAAGGTGCGTATAGACGGATTTAAAGTTTTCTTCTGGCTGACCTTCACATTAAAAAAATGTAAACATACTAAATAAGGAAAGTGCAAGTGAAAAAAGTAGAACGTCTACCGTCCAAATCTGTAAATATCTTTGACTAACGTTTAGTTGTCCGTGGGAGCAGAATTTAAAAACT ] [+] EMBL CD089506 [ GGTGTCAAGGAGAACAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTTGTAGTTTTTTACGGCTTATCCAGAAACGGGCGTATTACAATCTACAATGTTCTGACAGTTCTCTGTACTGATACGTCCGGTTTTCTGTGGTAATTTTTAGTTAGAAATCACAACAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9093#0 GCGACTAAATAGATGACGTAAGCCAAGAAGCTCATATATGGAATTCATACTTACTTATTA 60 consensus_9093#1 ------------------------------------------------------------ consensus_9093#0 GAGATTAATTCTCCAGCATAAGTGGCACTGGCACGATAAGTGCCACCTGAAGTTATCATA 120 consensus_9093#1 ------------------------------------------------------------ consensus_9093#0 GATGAATTATCTGAGTCTTTGAAGTTTTTTGCATTCGTCTTACAATCTTCCATACGATTA 180 consensus_9093#1 ------------------------------------------------------------ consensus_9093#0 TTAGCAAGTTTAAACCATGCTATAGCTTTGCCATAAACTTTATTTTCTTCTTCATTTATG 240 consensus_9093#1 -------------------------GTCCACTATAACATCGCCGCCCTTCAT--TCTATT 33 * * **** * **** * * *** consensus_9093#0 CCGGCATAATAAGCCGTTAACGATGAATAAAAAC-TAGTCTTTATTTGACACAGGCGACA 299 consensus_9093#1 TTGG-GTGTCAAGGAGAAGAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTT 92 ** * *** * * * ** * * ** *** **** * * consensus_9093#0 GCTATGTTTTAGAATATTTTGGGAGAACTATTTTATCATTAGACTCAA-ACCCTAACAGT 358 consensus_9093#1 GTAGTTTTTTACGGCTTATCCAGA-AACGGGCGTATTACAATCTACAATGTTCTGACAGT 151 * * ***** * * ** *** *** * * *** ** ***** consensus_9093#0 TGG--GCACCAACATTTTCGTAAACCTCCATAATGTACTGAGACAATTTAGCAGTCACAT 416 consensus_9093#1 TTTCTGTACTGATACGTCCG--GTTTTCTGTGGTAATTT----TTAGTTAGAAATCACAA 205 * * ** * * * ** ** * * * * **** * ***** consensus_9093#0 TAGCTGGCCTGTTATCCAGTATAGACTTTTCTACAACACATTCTTGAGCTTGTGCTAGCA 476 consensus_9093#1 GACTTAAGGTGC------GTATAGACGGATTTAAAGTTTTCTTCTG-GCTGACCTTCACA 258 * * ** ******** * ** * * ** *** * ** consensus_9093#0 TCAATGACCCAAAGAGTAGCATGAGCTCACTGGTCAAATCAGTTGCACCTGATACAGGTA 536 consensus_9093#1 TTAAAAA----------AATGTAAACATACTAAATAAGGAAAGTGCAAGTGAAAAAAGTA 308 * ** * * * * * *** ** * **** *** * * *** consensus_9093#0 GA-TGACGCTCGACTAGTGTATTTAGAGCCCAAGAAGCGCATTGAGA-ATGCGTACAAGC 594 consensus_9093#1 GAACGTCTACCGTCCAAATCTGTAAATATCTTTGACTAACGTTTAGTTGTCCGTGGGTGC 368 ** * * ** * * * * * ** * ** ** * *** ** consensus_9093#0 AATTTTCATACTATCTGCATCCGCTCTCTTCTCCTTGACACCCAAAATAGAATGAAGGGC 654 consensus_9093#1 AGAATTTA-AAAACTTAACTGCACATAAGATGAGGAGACACTTAGAATTATAAGTAGCTA 427 * ** * * * * * * * ***** * *** * * ** consensus_9093#0 GGCGATG-TTATACATTACGGATGCTTCTTCAAAACGAATATCCGAAGACTCCAAAAGAC 713 consensus_9093#1 GCTGACGATTACGCAGTGCCAGAACTGTGCAATATGGGGCCTAAAAGTACTAAAAAAGAC 487 * ** * *** ** * * ** * * * * * *** ******* consensus_9093#0 AATCGGAAAAAATGTCTTGCCATTTCCATGTTACATCTGTACACGTTGCGGCGGAAAAAT 773 consensus_9093#1 AATCAGAT---------------------------------------------------- 495 **** ** consensus_9093#0 GAAACCTGCCTTTAAGTAGCTGCAGTTGAGCATAATACCGTTTCAGTTGAGAAAGTCCAG 833 consensus_9093#1 ------------------------------------------------------------ consensus_9093#0 TGTAATCGACAGAAGGTTCACAGGCATATTTTCGTAAGCTAAGGAAACTATTGAATTCCT 893 consensus_9093#1 ------------------------------------------------------------ consensus_9093#0 TCTCGAAGAGACTGGGAGATTGTTGATATTGCGCTTCGAT 933 consensus_9093#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||