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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9093#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 933 fasta sequence
[GCGACTAAATAGATGACGTAAGCCAAGAAGCTCATATATGGAATTCATACTTACTTATTAGAGATTAATTCTCCAGCATAAGTGGCACTGGCACGATAAGTGCCACCTGAAGTTATCATAGATGAATTATCTGAGTCTTTGAAGTTTTTTGCATTCGTCTTACAATCTTCCATACGATTATTAGCAAGTTTAAACCATGCTATAGCTTTGCCATAAACTTTATTTTCTTCTTCATTTATGCCGGCATAATAAGCCGTTAACGATGAATAAAAACTAGTCTTTATTTGACACAGGCGACAGCTATGTTTTAGAATATTTTGGGAGAACTATTTTATCATTAGACTCAAACCCTAACAGTTGGGCACCAACATTTTCGTAAACCTCCATAATGTACTGAGACAATTTAGCAGTCACATTAGCTGGCCTGTTATCCAGTATAGACTTTTCTACAACACATTCTTGAGCTTGTGCTAGCATCAATGACCCAAAGAGTAGCATGAGCTCACTGGTCAAATCAGTTGCACCTGATACAGGTAGATGACGCTCGACTAGTGTATTTAGAGCCCAAGAAGCGCATTGAGAATGCGTACAAGCAATTTTCATACTATCTGCATCCGCTCTCTTCTCCTTGACACCCAAAATAGAATGAAGGGCGGCGATGTTATACATTACGGATGCTTCTTCAAAACGAATATCCGAAGACTCCAAAAGACAATCGGAAAAAATGTCTTGCCATTTCCATGTTACATCTGTACACGTTGCGGCGGAAAAATGAAACCTGCCTTTAAGTAGCTGCAGTTGAGCATAATACCGTTTCAGTTGAGAAAGTCCAGTGTAATCGACAGAAGGTTCACAGGCATATTTTCGTAAGCTAAGGAAACTATTGAATTCCTTCTCGAAGAGACTGGGAGATTGTTGATATTGCGCTTCGAT]
[+] EMBL CD087894 [GCGACTAAATAGATGACGTAAGCCAAGAAGCTCATATATGGAATTCATACTTACTTATTAGAGATTAATTCTCCAGCATAAGTGGCACTGGCACGATAAGTGCCACCTGAAGTTATCATAGATGAATTATCTGAGTCTTTGAAGTTTTTTGCATTCGTCTTACAATCTTCCATACGATTATTAGCAAGNTTAAACCATGCTATAGCTNTGCC ]
[-] EMBL CD087946 [ CGACTAAATAGATGACGTAA CCAAGAAGCTCATATATGG ATTCATAC TAC TATTAGAGATTAA TCTCCAGCATAAGTGGCACTGGCACGATAAGTGCCACCTGAAGTCATCATAGATGAATTATCTGAGTCTTTGAAGTTTTTTGCATTCGTCTTACAATCTTCCATACGATTATTAGCAAGTTTAAACCATGCTATAGCTTTGCCATAAACTTTATTTTCTTCTTCATTTATGCCGGCATAATAAGCCGTTAACGATGAATAAAAACTAGTCTTTATTTGACACAGGCGACAGCTATGTTT ]
[-] EMBL CD201641 [ TTTTTTGCATTCGTCTTACAATCTTCCATACGATTATTAGCAAGTTTAAACCATGCTATAGCTTTGCCATAAACTTTATTTTCTTCTTCATTTATGCCGGCATAATAAGCCGTTAACGATGAATAAAAACTAGTCTTTATTTGACATCGACGAC GCCATTCTTTAGAATATTTTGGGAGAACTATTTTATCATTAGACTCAAACCCTAACAGTTGGGCACCAACATTTTCGTAAACCTCCATAATGTACTGAGACAATTTAGCAGTCACATTAGCTGGCCTGTTATCCAGTATAGACTTTTCTACAACACATTCTTGAGCTTGTGCTAGCATCAATGACCCAAAGAGTAGCATGAGCTCACTGGTCAAATCAGTTGCACCTGATACAGGTAGATGACGCTCGACTAGTGTATTTAGAGCCCAAGAAGCGCATTGAGAATGCGTACAAGCAATTTTCATACTATCTGCATCCGCTCTC ]
[+] EMBL CD132020 [ TTGCACCTGATACAGGTAGATGACGCTCGACTAGTGTATTTAGAGCCCAAGAAGCGCATTGAAAATGCGTACAAGCAATTTTCATACTATCTGCATCCGCTCTCTTCTCCTTGACACCCAAAATAGAATGAAGGGCGGCGATGTTATACATTACGGATGCTTCTTCAAAACGAATATCCGAAGACTCCAAAAGACAATCGGAAAAAATGTCTTGCCATTTCCATGTTACATCTGTACACGTTGCGGCGGAAAAATGAAACCTGCCTTTAAGTAGCTGCAGTTGAGCATAATACCGTTTCAGTTGAGAAAGTCCAGTGTAATCGACAGAAGGTTCACAGGCATATTTTCGTAAGCTAAGGAAACTATTGAATTCCTTCTCGAAGAGACTGGGAGATTGTTGATATTGCGCTTCGAT]
consensusID : consensus_9093#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 495 fasta sequence
[GTCCACTATAACATCGCCGCCCTTCATTCTATTTTGGGTGTCAAGGAGAAGAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTTGTAGTTTTTTACGGCTTATCCAGAAACGGGCGTATTACAATCTACAATGTTCTGACAGTTTTCTGTACTGATACGTCCGGTTTTCTGTGGTAATTTTTAGTTAGAAATCACAAGACTTAAGGTGCGTATAGACGGATTTAAAGTTTTCTTCTGGCTGACCTTCACATTAAAAAAATGTAAACATACTAAATAAGGAAAGTGCAAGTGAAAAAAGTAGAACGTCTACCGTCCAAATCTGTAAATATCTTTGACTAACGTTTAGTTGTCCGTGGGTGCAGAATTTAAAAACTTAACTGCACATAAGATGAGGAGACACTTAGAATTATAAGTAGCTAGCTGACGATTACGCAGTGCCAGAACTGTGCAATATGGGGCCTAAAAGTACTAAAAAAGACAATCAGAT]
[+] EMBL CD089480 [GTCCACTATAACATCGCCGCCCTTCATTCTATTTTGGGTGTCAAGGAGAAGAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTTGTAGTTTTTTACGGCTTATCCAGAAACGGGCGTATTACAATCTACAATGTTCTGACAGTTTTCTGTACTGATACGTCCGGTTTTCTGTGGTAATTTTTAGTTAGAAATCACAAGACTTAAGGTGCGTATAGACGGATTTAAAGTTTTCTTCTGGCTGACCTTCACATTAAAAAAATGTAAACATACTAAATAAGGAAAGTGCAAGTGAAAAAAGTAGAACGTCTACCGTCCAAATCTGTAAATATCTTTGACTAACGTTTAGTTGTCCGTGGGTGCAGAATTTAAAAACTTAACTGCACATAAGATGAGGAGACACTTAGAATTATAAGTAGCTAGCTGACGATTACGCAGTGCCAGAACTGTGCAATATGGGGCCTAAAAGTACTAAAAAAGACAATCAGAT]
[+] EMBL CD089532 [GTCCACTATAACATCGCCGCCCTTCATTCTATTTTGGGTGTCAAGGAGAAGAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTTGTAGTTTTTTACGGCTTATCCAGAAACGGGCGTATTACAATCTACAATGTTCTGACAGTTTTCTGTACTGATACGTCCGGTTTTCTGTGGTAATTTTTAGTTAGAAATCACAAGACTTAAGGTGCGTATAGACGGATTTAAAGTTTTCTTCTGGCTGACCTTCACATTAAAAAAATGTAAACATACTAAATAAGGAAAGTGCAAGTGAAAAAAGTAGAACGTCTACCGTCCAAATCTGTAAATATCTTTGACTAACGTTTAATTGTCCG ]
[+] EMBL CD089551 [ GCCGCCCTTCATTCTATTTTGGGTGTCAAGGAGAAGAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTTGTAGTTTTTTACGGCTTATCCAGAAACGGGCGTATTACAATCTACAATGTTCTGACAGTTTTCTGTACTGATACGTCCGGTTTTCTGTGGTAATTTTTAGTTAGAAATCACAAGACTTAAGGTGCGTATAGACGGATTTAAAGTTTTCTTCTGGCTGACCTTCACATTAAAAAAATGTAAACATACTAAATAAGGAAAGTGCAAGTGAAAAAAGTAGAACGTCTACCGTCCAAATCTGTAAATATCTTTGACTAACGTTTAGTTGTCCGTGGGAGCAGAATTTAAAAACT ]
[+] EMBL CD089506 [ GGTGTCAAGGAGAACAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTTGTAGTTTTTTACGGCTTATCCAGAAACGGGCGTATTACAATCTACAATGTTCTGACAGTTCTCTGTACTGATACGTCCGGTTTTCTGTGGTAATTTTTAGTTAGAAATCACAACAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9093#0 GCGACTAAATAGATGACGTAAGCCAAGAAGCTCATATATGGAATTCATACTTACTTATTA 60
consensus_9093#1 ------------------------------------------------------------
consensus_9093#0 GAGATTAATTCTCCAGCATAAGTGGCACTGGCACGATAAGTGCCACCTGAAGTTATCATA 120
consensus_9093#1 ------------------------------------------------------------
consensus_9093#0 GATGAATTATCTGAGTCTTTGAAGTTTTTTGCATTCGTCTTACAATCTTCCATACGATTA 180
consensus_9093#1 ------------------------------------------------------------
consensus_9093#0 TTAGCAAGTTTAAACCATGCTATAGCTTTGCCATAAACTTTATTTTCTTCTTCATTTATG 240
consensus_9093#1 -------------------------GTCCACTATAACATCGCCGCCCTTCAT--TCTATT 33
* * **** * **** * * ***
consensus_9093#0 CCGGCATAATAAGCCGTTAACGATGAATAAAAAC-TAGTCTTTATTTGACACAGGCGACA 299
consensus_9093#1 TTGG-GTGTCAAGGAGAAGAGAGCGGATGCAGATGTAAGCTTATTTTGTTGCTTGACGTT 92
** * *** * * * ** * * ** *** **** * *
consensus_9093#0 GCTATGTTTTAGAATATTTTGGGAGAACTATTTTATCATTAGACTCAA-ACCCTAACAGT 358
consensus_9093#1 GTAGTTTTTTACGGCTTATCCAGA-AACGGGCGTATTACAATCTACAATGTTCTGACAGT 151
* * ***** * * ** *** *** * * *** ** *****
consensus_9093#0 TGG--GCACCAACATTTTCGTAAACCTCCATAATGTACTGAGACAATTTAGCAGTCACAT 416
consensus_9093#1 TTTCTGTACTGATACGTCCG--GTTTTCTGTGGTAATTT----TTAGTTAGAAATCACAA 205
* * ** * * * ** ** * * * * **** * *****
consensus_9093#0 TAGCTGGCCTGTTATCCAGTATAGACTTTTCTACAACACATTCTTGAGCTTGTGCTAGCA 476
consensus_9093#1 GACTTAAGGTGC------GTATAGACGGATTTAAAGTTTTCTTCTG-GCTGACCTTCACA 258
* * ** ******** * ** * * ** *** * **
consensus_9093#0 TCAATGACCCAAAGAGTAGCATGAGCTCACTGGTCAAATCAGTTGCACCTGATACAGGTA 536
consensus_9093#1 TTAAAAA----------AATGTAAACATACTAAATAAGGAAAGTGCAAGTGAAAAAAGTA 308
* ** * * * * * *** ** * **** *** * * ***
consensus_9093#0 GA-TGACGCTCGACTAGTGTATTTAGAGCCCAAGAAGCGCATTGAGA-ATGCGTACAAGC 594
consensus_9093#1 GAACGTCTACCGTCCAAATCTGTAAATATCTTTGACTAACGTTTAGTTGTCCGTGGGTGC 368
** * * ** * * * * * ** * ** ** * *** **
consensus_9093#0 AATTTTCATACTATCTGCATCCGCTCTCTTCTCCTTGACACCCAAAATAGAATGAAGGGC 654
consensus_9093#1 AGAATTTA-AAAACTTAACTGCACATAAGATGAGGAGACACTTAGAATTATAAGTAGCTA 427
* ** * * * * * * * ***** * *** * * **
consensus_9093#0 GGCGATG-TTATACATTACGGATGCTTCTTCAAAACGAATATCCGAAGACTCCAAAAGAC 713
consensus_9093#1 GCTGACGATTACGCAGTGCCAGAACTGTGCAATATGGGGCCTAAAAGTACTAAAAAAGAC 487
* ** * *** ** * * ** * * * * * *** *******
consensus_9093#0 AATCGGAAAAAATGTCTTGCCATTTCCATGTTACATCTGTACACGTTGCGGCGGAAAAAT 773
consensus_9093#1 AATCAGAT---------------------------------------------------- 495
**** **
consensus_9093#0 GAAACCTGCCTTTAAGTAGCTGCAGTTGAGCATAATACCGTTTCAGTTGAGAAAGTCCAG 833
consensus_9093#1 ------------------------------------------------------------
consensus_9093#0 TGTAATCGACAGAAGGTTCACAGGCATATTTTCGTAAGCTAAGGAAACTATTGAATTCCT 893
consensus_9093#1 ------------------------------------------------------------
consensus_9093#0 TCTCGAAGAGACTGGGAGATTGTTGATATTGCGCTTCGAT 933
consensus_9093#1 ----------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||