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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9097#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 915 fasta sequence
[TTTAGTGTGTATTGTTTCTTCTTAACAAAAATAGGTATTATGCAACAATTACTAAACAATAAACTTGGAATAGTTGGGAATAAAAAGTGGAAGTAGATATGATACAGCTTCATCAACTTTAAAACATGCAAAAAATGTTAAATAAATTTCAATCACAAAATAGAAATCTTATTTTTATCCAGCATGACAACATGTAAAGAAATTTCCCCATACTAAACTAGTTTTATCACTAGCTAAAGCATTTTTATTGTCTTCATGGCAAACACAATGTGCACTTGTATGCGCCGTAATTTGTCAATAACAAAGAAAATGTAAAAGATTTCTATAAAAGAATGGGCAAAATCTGCTTAATAATTACACGTTATCTTGATAATAAATACAATGCTGTAATGACACACAATCAACGAAAAGGAGGAAAACTAAGAGGATTAGATAGTGTGGATAGGACTTAGATGTAAATATCACAGATTAATTAATAACTAGTAAAATGTTGAATAGAAAGCTGAAGTAATTTGATTGATTTTGAACACAACTAGTTAATCTGTACAAATGGGCACCTTGCCCAATGCTCTAGATATATCAAAGTGGCAAATATCATTCAGTCCTCCACCGACACGTTC-ACCGAAGAAGTCAAACACATATAAATTTGGCATTCTAAGTGAAAGATCTTCAAGTATATTATCAACAACGTGATTACATTGGGTCAAATTTAATATCACTAAATGAGGTACTTTTAACGGGATATCAGCAAATGCTTTTCCTTGAATGACGGAATTCCCAATAAGGCTTAGCTGGCGTAAAGAACTGCATATTTCAATTATTTGGTTCACACCAATATCAGTAACTTCCCAACACCAGTTTAAGGTAAGAAAGCGTAAGCGACTACCGCAACAGCTACAAGTCCTCGTGCCGAAT]
[+] EMBL CD074453 [TTTAGTGTGTATTGTTTCTTCTTAACAAAAATAGGTATTATGCAACAATTACTAAACAATAAACTTGGAATAGTTGGGAATAAAAAGTGGAAGTAGATATGATACAGCTTCATCAACTTTAAAACATGCAAAAAATGTTAAATAAATTTCAATCACAAAATAGAAATCTTATTTTTATCCAGCATGACAACATGTAAAGAAATTTCCCCATACTAAACTAGTTTTATCACTAGCTAAAGCATTTTTATTGTCTTCATGGCAAACACAATGTGCACTTGTATGCGCCGTAATTTGTCAATAACAAAGAAAATGTAAAAGATTTCTATAAAAGAATGGGCAAAATCTGCTTAATAATTACACGTTATCTTGATAATAAATACAATGCTGTAATGACACACAATCAACGAAAAGGAGGAAAACTAAGAGGATTAGATAGTGTGGATAGGACTTAGATGTAAATATCACAGATTAATTAATAACTAGTAAAATGTTGAATAGAAAGCTGAAGTAATTTGATTGATTTTGAACACAACTAGTTAATCTGTACAAATGGGCACCTTGCCCAATGCTCTAGATATATCAAAGTGGCAAATATCATTCAGTCCTCCACCGACACGTTC ACCGAAGAAGTC AACACATATAAATTTGGCATTCTAAGTGAAAGATCTTC AGTATATTATCAAC ACGTGATTAC ]
[+] EMBL CD074375 [TTTAGTGTGTATTGTTTCTTCTTAACAAAAATAGGTATTATGCAACAATTACTAAACAATAAACTTGGAATAGTTGGGAATAAAAAGTGGAAGTAGATATGATACAGCTTCATCAACTTTAAAACATGCAAAAAATGTTAAATAAATTTCAATCACAAAATAGAAATCTTATTTTTATCCAGCATGACAACATGTAAAGAAATTTCCCCATACTAAACTAGTTTTATCACTAGCTAAAGCATTTTTATTGTCTTCATGGCAAACACAATGTGCACTTGTATGCGCCGTAATTTGTCAATAACAAAGAAAATGTAAAAGATTTCTATAAAAGAATGGGCAAAATCTGCTTAATAATTACACGTTATCTTGATAATAAATACAATGCTGTAATGACACACAATCAACGAAAAGGAGGAAAACTAAGAGGATTAGATAGTGTGGATAGGACTTAGATGTAAATATCACAGATTAATTAATAACTAGTAAAATGTTGAATAGAAAGCTGAAGTAATTTGATTGATTTTGAACACAACTAGTTAATCTGTACAAATGGGCACCTTGCCCAATGCTCTAGATATATCAAAGTGGCAAATATCATTCAGTCCTCCACCGACACGTTC ACCGAAGAAGTCAAACACATATAAATTTGGCATTCTAA ]
[+] EMBL CD074272 [TTTAGTGTGTATTGTTTCTTCTTAACAAAAATAGGTATTATGCAACAATTACTAAACAATAAACTTGGAATAGTTGGGAATAAAAAGTGGAAGTAGATATGATACAGCTTCATCAACTTTAAAACATGCAAAAAATGTTAAATAAATTTCAATCACAAAATAGAAATCTTATTTTTATCCAGCATGACAACATGTAAAGAAATTTCCCCATACTAAACTAGTTTTATCACTAGCTAAAGCATTTTTATTGTCTTCATGGCAAACACAATGTGCACTTGTATGCGCCGTAATTTGTCAATAACAAAGAAAATGTAAAAGATTTCTATAAAAGAATGGGCAAAATCTGCTTAATAATTACACGTTATCTTGATAATAAATACAATGCTGTAATGACACACAATCAACGAAAAGGAGGAAAACTAAGAGGATTAGATAGTGTGGATAGGACTTAGATGTAAATATCACAGATTAATTAATAACTAGTAAAATGTTGAATAGAAAGCTGAAGTAATTTGATTGATTTTGAACACAACTAGTTAATCTGTACAAATGGGCACCTTGCCCAATGCTCTAGATATATCAAAGTGGCAAATATCATTCAGTCCTCCACCGACACGTTCNACCGAAGAAGTCAAACACATATAAATTTGGCA ]
[-] EMBL CD080356 [ TATGGTCTTCATGGCAAACACAATGTGCACTTGTATGCGCCGTAATTTGTCAATAACAAAGANAATGTAAAAGATTTCTATAAAAGAATGGGCAAAATCTGCTTAATAATTACACGTTATCTTGATAATAAATACAATGCTGTAATGACACACAATCAACGAAAAGGAGGAAAACTAAGAGGATTAGATAGTGTGGATAGGACTTAGATGTAAATATCACAGATTAATTAATAACTAGTAAAATGTTGAATAGAAAGCTGAAGTAATTTGATTGATTTTGAACACAACTAGTTAATCTGTACAAATGGGCACCTTGCCCAATGCTCTAGATATATCAAAGTGGCAAATATCATTCAGTCCTCCACCGACACGTTC ACCGAAGAAGTCAAACACATATAAATTTGGCATTCTAAGTGAAAGATCTTCAAGTATATTATCAACAACGTGATTACATTGGGTCAAATTTAATATCACTAAATGAGGTACTTTTAACGGGATATCAGCAAATGCTTTTCCTTGAATGACGGAATTCCCAATAAGGCTTAGCTGGCGTAAAGAACTGCATATTTCAATTATTTGGTTCACACCAATATCAGTAACTTCCCAACACCAGTTTAAGGTAAGAAAGCGTAAGCGACTACCGCAACAGCTACAAGTCCTCGTGCCGAAT]
[-] EMBL CD080464 [ TGTATGCGCCGT ATTGGTCAATAACAAAGANAATGTAAAAGATTTCTATAAAAGAATGGGCANAATCTGCTTAATAATTACACGTTATCTTGATAATAAATACAATGCTGTAATGACACACAATCAACGAAAAGGAGGAAAACTAAGAGGATTAGATAGTGTGGATAGGACTTAGATGTAAATATCACAGATTAATTAATAACTAGTAAAATGTTGAATAGAAAGCTGAAGTAATTTGATTGATTTTGAACACAACTAGTTAATCTGTACAAATGGGCACCTTGCCCAATGCTCTAGATATATCAAAGTGGCAAATATCATTCAGTCCTCCACCGACACGTTC ACCGAAGAAGTCAAACACATATAAATTTGGCATTCTAAGTGAAAGATCTTCAAGTATATTATCAACAACGTGATTACATTGGGTCAAATTTAATATCACTAAATGAGGTACTTTTAACGGGATATCAGCAAATGCTTTTCCTTGAATGACGGAATTCCCAATAAGGCTTAGCTGGCGTAAAGAACTGCATATTTCAATTATTTGGTTCACACCAATATCAGTAACTTCCCAACACCAGTTTAAGGTAAGAAAGCGTAAGCGACTACCGCAACAGCTACAAat ]
[+] EMBL CD141178 [ TGTGGATAGGACTTAGATGTAAATATCACAGATTAATTAATAACTAGTAAAATGTTGAATAGAAAGCTGAAGTAATTTGATTGATTTTGAACACAACTAGTTAATCTGTACAAATGGGCACCTTGCCCAATGCTCTAGATATATCAAAGTGGCAAATATCATTCAGTCCTCCACCGACACGTTC ACCGAAGAAGTCAAACACATATAAATTTGGCATTCTAAGTGAAAGATCTTCAAGTATATTATCAACAACGTGATTACATTGNGTCAAATTTAATATCACTAAATGAGGTACTTTTAACGNGATATCAGCAAATGCTTTTCCT ]
consensusID : consensus_9097#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 594 fasta sequence
[TATCACTAAATGAGGTACTTTTACGGGGATATCAGCAAATGCTTTTCCTTGAATGACGGAATTCCCAATAAGGCTTAGCTGGCGTAAAGAACTGCATATTTCAATTATNTGGTTCACACCAATATCAGTAACTTCCCAACACCAGTTTAAGGTAAGANAGCGTAAGCGACTACCGCAACAGCTACAAATATCCATCACTACTGAATCATTCAACCCAGGTGCTTCACTTAAATCTAAGTGTTCAAGATACCTCAACTTTAATTGATGGTCCAAATGACTTAAACTTTTGGAGACAAATAATGAGCTTAATCCGGTAGGACTGACTTGATGAGTTTTTCGCAATGTAAGAGCGTCAAGATTTGAAAGGTTAGCTATGGATTTAGCTGCTTCATATTCAACATGATCGCAAAAGATAATCCACAGTTGTTGAATTCCGATTACATGGTGTTCAATTTCTGGATATATAAGATCTTCAAAGTCTGGTGTCCGTTTTGTAGCACATTCCAATCGAACAATAAATTCATTTAATCCGGAATTTGAAAGTTCAAAACCATATAACCATATTGCATCAAGGTTACCATTACGTACAGCTTC]
[-] EMBL CD200751 [TATCACTAAATGAGGTACTTTTACGGGGATATCAGCAAATGCTTTTCCTTGAATGACGGAATTCCCAATAAGGCTTAGCTGGCGTAAAGAACTGCATATTTCAATTATNTGGTTCACACCAATATCAGTAACTTCCCAACACCAGTTTAAGGTAAGANAGCGTAAGCGACTACCGCAACAGCTACAAATATCCATCACTACTGAATCATTCAACCCAGGTGCTTCACTTAAATCTAAGTGTTCAAGATACCTCAACTTTAATTGATGGTCCAAATGACTTAAACTTTTGGAGACAAATAATGAGCTTAATCCGGTAGGACTGACTTGATGAGTTTTTCGCAATGTAAGAGCGTCAAGATTTGAAAGGTTAGCTATGGATTTAGCTGCTTCATATTCAACATGATCGCAAAAGATAATCCACAGTTGTTGAATTCCGATTACATGGTGTTCAATTTCTGGATATATAAGATCTTCAAAGTCTGGTGTCCGTTTTGTAGCACATTCCAATCGAACAATAAATTCATTTAATCCGGAATTTGAAAGTTCAAAACCATATAACCATATTGCATCAAGGTTACCATTACGTACAGCTTC]
[+] EMBL CD147140 [ TGCTTTTCCTTGAATGACGGAATTCCCAATAAGGCTTATCTGGCGTAAAGAACTGCATATTTCAATTATTTGGTTCACACCAATATCAGTAACTTCCCAACACCAGTTTAAGGTAAGAAAGCGTAAGCGACTACCGCAACAGCTACAAATATCCATCACTACTGAATCATTCAAACCAGGTGCTTCACTTAAATTTAAGTGGTCAAGATACCTCAACTTTAATTGATGGTCCAAATGACTTAAACTTTTGGAGACAAATAATGAGCTTAAACCGGTAGGACTGACTTGATGAGTTTTTCGCAATGTAGGAGCGACAAGATTTGAAAGGTTAGCTATGGATTTAACTGCTTCATCTTCAACATGATCACAAAAGCTAATCCACAGTTGTTGAATTCCGATTACATGGTGTTCAATTTCTGGATTTATAAGATCTTCAAATTCTGGTGTCCGTTNTGTAGCACATTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9097#0 TTTAGTGTGTATTGTTTCTTCTTAACAAAAATAGGTATTATGCAACAATTACTAAACAAT 60
consensus_9097#1 ------------------------------------------------------------
consensus_9097#0 AAACTTGGAATAGTTGGGAATAAAAAGTGGAAGTAGATATGATACAGCTTCATCAACTTT 120
consensus_9097#1 ------------------------------------------------------------
consensus_9097#0 AAAACATGCAAAAAATGTTAAATAAATTTCAATCACAAAATAGAAATCTTATTTTTATCC 180
consensus_9097#1 ------------------------------------------------------------
consensus_9097#0 AGCATGACAACATGTAAAGAAATTTCCCCATACTAAACTAGTTTTATCACTAGCTAAAGC 240
consensus_9097#1 --------------------------------------------TATCACTAAATGAGGT 16
******** * * *
consensus_9097#0 ATTTTTATTGTCTTCATGGCAAACACAATGTGCACTTGTATGCGCCGTAATTTGTCAATA 300
consensus_9097#1 ACTTTTACGGGGATATCAGCAAATGCT---TTTCCTTGAATGA--CGGAATTC-CCAATA 70
* ***** * * ***** * * **** *** ** **** *****
consensus_9097#0 A--CAAAGAAAATGTAAAAGATTTCTATAAAAGAATGGGCAAAATCTGCTTAATAATTAC 358
consensus_9097#1 AGGCTTAGCTGGCGTAAAGAACTGC-ATATTTCAATTATNTGGTTCACACCAATATCAGT 129
* * ** ***** * * * *** *** ** ****
consensus_9097#0 ACGTTATCTTGATAATAAATACAATGCTGTAATGACACACAATCAACGAAAAGGAGGAAA 418
consensus_9097#1 AACTT--CCCAACACCAGTTTAAGGTAAGANAGCGTAAGCGACTACCGCAACAGCTACAA 187
* ** * * * * * * * * * * * * ** ** * **
consensus_9097#0 ACTAAGAGGATTAGATAGTGTGGATAGGACTTAGATGTAAATATCACAGATTAATTAATA 478
consensus_9097#1 ATATCCATCACTACTGAATC---ATTCAACCCAGGTGCTTCACTTAAATCTAAGTGTTCA 244
* * * ** * * ** ** ** ** * * * * * * *
consensus_9097#0 ACTAGTAAAATGTTGAATAGAAAGCTGAAGTAATTTGATTGATTTTGAACACAACTAGTT 538
consensus_9097#1 AGATACCTCAACTTTAATTGATGGTCCAAATGACTTAAAC--TTTTGGAGACAAATAATG 302
* * ** *** ** * ** * * ** * ***** * **** ** *
consensus_9097#0 AATCTGTACAAATGGGCACCTTGCCCAATGCTCTAGATATATCAAAGTGGCAAATATCAT 598
consensus_9097#1 AGCTTAATCCGGTAGGA--CTGACTTGATG-----AGTTTTTCGCAATG--TAAGAGCGT 353
* * * * ** ** * *** * * ** * ** ** * * *
consensus_9097#0 TCAGTCCTCCACCGACACGTTCACCGAAGAAGTCAAACACATATAAATTTGGCATTCTAA 658
consensus_9097#1 CAAGATTT-----GAAAGGTTAGCTATGGA--TTTAGCTGCTTCATATTCAACATGATC- 405
** * ** * *** * ** * * * * * *** *** *
consensus_9097#0 GTGAAAGATCTTCAAGTATATTATCAACAACGTGATTACATTGGGTCAAATTTAATATCA 718
consensus_9097#1 GCAAAAGATAATCCACAGT--TGTTGA-ATTCCGATTACATGGTGTTCAATTT---CTGG 459
* ****** ** * * * * * * ******** * ** ***** *
consensus_9097#0 CTAAATGAGGTACTTTTAACGGGATATCAGCA----AATGCTTTTCC-TTGAATGACGGA 773
consensus_9097#1 ATATATAAGATCTTCAAAGTCTGGTGTCCGTTTTGTAGCACATTCCAATCGAACAATAAA 519
** ** ** * * * * * ** * * * ** * * *** * *
consensus_9097#0 ATT-CCCAATAAGGCTTAGCTGGCGTAAAGAACTGCATATTTCAATTATTTGGTTCACAC 832
consensus_9097#1 TTCATTTAATCCGGAATT-TGAAAGTTCAAAACCATATAACCATATTGCATCAAGGTTAC 578
* *** ** * ** * *** *** *** * **
consensus_9097#0 CAATATCAGTAACTTCCCAACACCAGTTTAAGGTAAGAAAGCGTAAGCGACTACCGCAAC 892
consensus_9097#1 CATTACGTACAGCTTC-------------------------------------------- 594
** ** * ****
consensus_9097#0 AGCTACAAGTCCTCGTGCCGAAT 915
consensus_9097#1 -----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||