cluster # 9098

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Schistosoma mansoni
cluster # 9098 cluster # 9098 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9098#0 length = 1132 sequences # 2

consensus_9098#1 length = 798 sequences # 5
consensus_9098#2 length = 135 sequences # 1

consensusID : consensus_9098#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1132
fasta sequence

                              [TCAGACTTTATTGAATTTTTAATGAAACTGTTTTCTTTTCTTTGGTGACTTGTTGTATTACGTTGTTACTTTTCTCTCTCTTTGTACCTCTTCTTCTTTTTTGAAAATTGCTCTGTTTGTAAATGAAATCTTCACATTTATCGATTAATTTCAGAAATTATTCTTGTTTCGCATTTCTATTTATTATTATTATTATTATTATCACTACTACTGTTTTTTTACAGTTCTCTTCAGTGCAAAAGTATTTCTAATATCTTGGACAAAAGCAATTACAAAACGATGATGATGCATGTGTACTTATTGTTTCTATGTATGTATTTTGTTCGTTATTCTTTTATCTTGCAATATATATATATATATATATATATATTGATACAATATCAGTCGGTTTCGATTATCTGAGCTTCGTGAATACTGTGTTTGTGTGTTTTTTGTTCTCTCTTCTGTTATCCTGGGCTTGTTGATCGATTGAAATGATCTTATGTTGAATATTCTTCGTATGTCAGGGTTCTATAACGGTTTTGTTGATATTCATAATCAAACATTTCAGAGTTATTCCAAATATTTTTTGAAGCTAGTTACACTCAGAAACAGTAACTAATTTGTAGTTGATAATAACGTCATATGATTCAACACATCCATTTATTGTTACCGGATTTTTTGCTGATGATTAATCAGTTATAGTAAAAACACCAGTTCTCGTTAGTTTTTTAGTAATGATAGATTGGAGCACTAATCATTTTCCCATGCATTCATACATTTTGTAGTTCTAAGAAGTGCGCACTACAACTGGACTACATTTACTTATTCTCTTATCGTCTTACGCTTTCCTCCACACGTCCAGAATAATCTTTCTCTGTTGTATTTATGTGATTACTGGGGAAGTCACGACAATTATGTATTTGTACCGGTCTGCTGCTCAACTGAAATTCTTAGATATTCAGTAGTGACAATTTCTGATTGAGTTATTCCATTTCAGTTTGTTTGCCACATGAGGATATGTTTTGTTTTTCCAAATCTAGATATTCAAAGATAAATCACAAAATGTATACTATAGTTAATAATAATGTTGATTTAAATGATTTAAAACGAAAAAAAAATGAAAAGCTCCTCGTGCCGAATTTTGGCTCGA]

[+] EMBL CD074229             [TCAGACTTTATTGAATTTTTAATGAAACTGTTTTCTTTTCTTTGGTGACTTGTTGTATTACGTTGTTACTTTTCTCTCTCTTTGTACCTCTTCTTCTTTTTTGAAAATTGCTCTGTTTGTAAATGAAATCTTCACATTTATCGATTAATTTCAGAAATTATTCTTGTTTCGCATTTCTATTTATTATTATTATTATTATTATCACTACTACTGTTTTTTTACAGTTCTCTTCAGTGCAAAAGTATTTCTAATATCTTGGACAAAAGCAATTACAAAACGATGATGATGCATGTGTACTTATTGTTTCTATGTATGTATTTTGTTCGTTATTCTTTTATCTTGCAATATATATATATATATATATATATATTGATACAATATCAGTCGGTTTCGATTATCTGAGCTTCGTGAATACTGTGTTTGTGTGTTTTTTGTTCTCTCTTCTGTTATCCTGGGCTTGTTGATCGATTGAAATGATCTTATGTTGAATATTCTTCGTATGTCAGGGTTCTATAACGGTTTTGTTGATATTCATAATCAAACATTTCAGAGTTATTCCAAATATTTTTTGAAGCTAGTTACACTCAGAAACAGTAACTAATTTGTAGTTGATAATAACGTCATATGATTCAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD080310             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCAGGGTTCTATAACGGTTNTGTTGATATTCATAATCAAACATTTCAGAGTTATTCCAAATATTTTTTGAAGCTAGTTACACTCAGAAACAGTAACTAATTTGTAGTTGATAATAACGTCATATGATTCAACACATCCATTTATTGTTACCGGATTTTTTGCTGATGATTAATCAGTTATAGTAAAAACACCAGTTCTCGTTAGTTTTTTAGTAATGATAGATTGGAGCACTAATCATTTTCCCATGCATTCATACATTTTGTAGTTCTAAGAAGTGCGCACTACAACTGGACTACATTTACTTATTCTCTTATCGTCTTACGCTTTCCTCCACACGTCCAGAATAATCTTTCTCTGTTGTATTTATGTGATTACTGGGGAAGTCACGACAATTATGTATTTGTACCGGTCTGCTGCTCAACTGAAATTCTTAGATATTCAGTAGTGACAATTTCTGATTGAGTTATTCCATTTCAGTTTGTTTGCCACATGAGGATATGTTTTGTTTTTCCAAATCTAGATATTCAAAGATAAATCACAAAATGTATACTATAGTTAATAATAATGTTGATTTAAATGATTTAAAACGAAAAAAAAATGAAAAGCTCCTCGTGCCGAATTTTGGCTCGA]




>consensus_9098#0
TCAGACTTTATTGAATTTTTAATGAAACTGTTTTCTTTTCTTTGGTGACTTGTTGTATTA
CGTTGTTACTTTTCTCTCTCTTTGTACCTCTTCTTCTTTTTTGAAAATTGCTCTGTTTGT
AAATGAAATCTTCACATTTATCGATTAATTTCAGAAATTATTCTTGTTTCGCATTTCTAT
TTATTATTATTATTATTATTATCACTACTACTGTTTTTTTACAGTTCTCTTCAGTGCAAA
AGTATTTCTAATATCTTGGACAAAAGCAATTACAAAACGATGATGATGCATGTGTACTTA
TTGTTTCTATGTATGTATTTTGTTCGTTATTCTTTTATCTTGCAATATATATATATATAT
ATATATATATTGATACAATATCAGTCGGTTTCGATTATCTGAGCTTCGTGAATACTGTGT
TTGTGTGTTTTTTGTTCTCTCTTCTGTTATCCTGGGCTTGTTGATCGATTGAAATGATCT
TATGTTGAATATTCTTCGTATGTCAGGGTTCTATAACGGTTTTGTTGATATTCATAATCA
AACATTTCAGAGTTATTCCAAATATTTTTTGAAGCTAGTTACACTCAGAAACAGTAACTA
ATTTGTAGTTGATAATAACGTCATATGATTCAACACATCCATTTATTGTTACCGGATTTT
TTGCTGATGATTAATCAGTTATAGTAAAAACACCAGTTCTCGTTAGTTTTTTAGTAATGA
TAGATTGGAGCACTAATCATTTTCCCATGCATTCATACATTTTGTAGTTCTAAGAAGTGC
GCACTACAACTGGACTACATTTACTTATTCTCTTATCGTCTTACGCTTTCCTCCACACGT
CCAGAATAATCTTTCTCTGTTGTATTTATGTGATTACTGGGGAAGTCACGACAATTATGT
ATTTGTACCGGTCTGCTGCTCAACTGAAATTCTTAGATATTCAGTAGTGACAATTTCTGA
TTGAGTTATTCCATTTCAGTTTGTTTGCCACATGAGGATATGTTTTGTTTTTCCAAATCT
AGATATTCAAAGATAAATCACAAAATGTATACTATAGTTAATAATAATGTTGATTTAAAT
GATTTAAAACGAAAAAAAAATGAAAAGCTCCTCGTGCCGAATTTTGGCTCGA

consensusID : consensus_9098#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 798
fasta sequence

                              [TTGGATTACGTTGTTACTTTTCTCTCTCTTTGTACCTCTTCTTCTTTTTTGAAAATTGCTCTGTTTGTAAATGAAATCTTCACATTTATCGATTAATTTCAGAAATTATTCTTGTTTCGCATTTCTATTTATTATTATTATTATTATTATCACTACTACTGGTGTTTTACAGTTCTCTTCAGTGCAAAAGTATTTCTAATATCTTGGACAAAAGCAATTACAAAACGATGATGATGCATGTGTACTTATTGTTTCTATGTATGTATTTTGTTCGTTATTCTTTTATCTTGCAATATATATATATATATATATATATATTGATACAATATCAGTCGGTTTCGATTATCTGAGCTTCGTGAATACTGTGTTTGTGTGTTTTT-CTGTGAATTTAATGTAGAATAGACAAAGAGAGAAAGAGATACACATTCGTTTATAATAATGAAATAATATTTATGATAAAAAAAAAAAGAAAAACCATACTTTAAATAATAAACAGAAGATGAAATACTTCCACTTATCTTCACTTTTTTTTCCCGATTCTTTACTTTTTATACTTTTATTTTTCACAAAATGTTTTTATTCAGTCTCTCTTATATTCATTTCTGTTTCAATTCTTTCCTTTCGGAAAACCTGATTACTTTGGAGTTATTGTTACTGTTGTGTAGGTCGGATGATATTTTTGTCTCTTTTTTTTGTACAATTGTATTTATCATCAGTAAAATATTTCATCCTTCAATTAAATGTTTATTTAATTAAACTGGGT-AATATAT-T-TTT-ATAAACCGGG-TT-AA-TA-CATAAAGC]

[+] EMBL CD082724             [TTGGATTACGTTGTTACTTTTCTCTCTCTTTGTACCTCTTCTTCTTTTTTGAAAATTGCTCTGTTTGTAAATGAAATCTTCACATTTATCGATTAATTTCAGAAATTATTCTTGTTTCGCATTTCTATTTATTATTATTATTATTATTATCACTACTACTGGTGTTTTACAGTTCTCTTCAGTGCAAAAGTATTTCTAATATCTTGGACAAAAGCAATTACAAAACGATGATGATGCATGTGTACTTATTGTTTCTATGTATGTATTTTGTTCGTTATTCTTTTATCTTGCAATATATATATATATATATATATATATTGATACAATATCAGTCGGTTTCGATTATCTGAGCTTCGTGAATACTGTGTTTGTGTGTTTTT CTGTGAATTTAATGTAGAATAGACAAAGAGAGAAAGAGATACACATTCGTTTATAATAATGAAATAA                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD076315             [                                                                                                                                                                                                       TATC TGGACAAAAGCAATTACAAAACGATGATGATGCATGTGTACTTATTGTTTCTATGTATGTATTTTGTTCGTTATTCTTTTATCTTGCAATATATATATATATATATATATATATTGATCCAATATCAGTCGGTTTCGATTATCTGAGCTTCGTGAATACTGTGTTTGTGTGTTTTT CTGTGAATTTAATGTAGAATAGACAAAGAGAGAAAGAGATACACATTCGTTTATAATAATGAAATAAT                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AI977791             [                                                                                                                                                                                                                                                                                                                                                                               gtctcgaGTTTTTACTGTGAATTTAATGTAGAATAGACAAAGAGAGAAAGAGATACACATTCGTTTATAATAATGAAATAATATTTATGATAAAAAAAAAAAGAAAAACCATACTTTAAATAATAAACAGAAGATGAAATACTTCCACTTATCTTCACTTTTTTTTCCCGATTCTTTACTTTTTATACTTTTATTTTTCACAAAATGTTTTTATTCAGTCTCTCTTATATTCATTTCTGTTTCAATTCTTTCCTTTCGGAAAACCTGATTACTTTGGAGTTATTGTTACTGTTGTGTAGGTCGGATGATATTTTTGTCTCTTTTTTTTGTACAATTGTATTTATCATCAGTAAAATATTTCATCCTTCAATTAAATGTTTATTTAATTAAACTGGGT AA ATAT TATTTAATAAACCGGGATT AATTC CATAAAGC]
[+] EMBL AI618815             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATGAT AAAAAAAAAAGAAAAACCATACTTTAAATAATAAACAGAAGATGAAATACTTCCACTTATCTTCACTTTTTTTTCCCGATTCTTTACTTTTTATACTTTTATTTTTCACAAAATGTTTTTAATCAGTCTCTCTTATATTCATTTCTGTTTCAATTCTTTCCTTTCGGAAAACCTGATTACTTTGGAGTTATTGTTACTGTTGTGTAAGTCGGATGATATTTTTGTCTCTTTTTTTTGTACAA TGTATTTATCATC GTAAAATATTTC TCCTCCAA TAAATGTTTATTTAA TAAACTGGGT AATATAT T TTT ATAAA CGGG TT AA TA CATA    ]
[-] EMBL CD076314             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATAATAAACAGAAGATGAAATACTTCCACTTATCTTCACTTTTTTTTCCCGATTCTTTACTTTTTATACTTTTATTTTTCACAAAATGTTTTTATTCAGTCTCTCTTATATTCATTTCTGTTTCAATTCTTTCCTTTCGGAAAACCTGATTACTTTGGAGTTATTGTTACTGTTGTGTAGGTCGGATGATATTTTTGTCTCTTTTTTTTGTACAATTGTATTTATCATCAGTAAAATATTTCATCCTTCAATTAAATGTTTATTTAATTAAACTGAGTAAATATATAT TTA ATAAACCGGA TTAAA TACCATAAA  ]




>consensus_9098#1
TTGGATTACGTTGTTACTTTTCTCTCTCTTTGTACCTCTTCTTCTTTTTTGAAAATTGCT
CTGTTTGTAAATGAAATCTTCACATTTATCGATTAATTTCAGAAATTATTCTTGTTTCGC
ATTTCTATTTATTATTATTATTATTATTATCACTACTACTGGTGTTTTACAGTTCTCTTC
AGTGCAAAAGTATTTCTAATATCTTGGACAAAAGCAATTACAAAACGATGATGATGCATG
TGTACTTATTGTTTCTATGTATGTATTTTGTTCGTTATTCTTTTATCTTGCAATATATAT
ATATATATATATATATATTGATACAATATCAGTCGGTTTCGATTATCTGAGCTTCGTGAA
TACTGTGTTTGTGTGTTTTTCTGTGAATTTAATGTAGAATAGACAAAGAGAGAAAGAGAT
ACACATTCGTTTATAATAATGAAATAATATTTATGATAAAAAAAAAAAGAAAAACCATAC
TTTAAATAATAAACAGAAGATGAAATACTTCCACTTATCTTCACTTTTTTTTCCCGATTC
TTTACTTTTTATACTTTTATTTTTCACAAAATGTTTTTATTCAGTCTCTCTTATATTCAT
TTCTGTTTCAATTCTTTCCTTTCGGAAAACCTGATTACTTTGGAGTTATTGTTACTGTTG
TGTAGGTCGGATGATATTTTTGTCTCTTTTTTTTGTACAATTGTATTTATCATCAGTAAA
ATATTTCATCCTTCAATTAAATGTTTATTTAATTAAACTGGGTAATATATTTTTATAAAC
CGGGTTAATACATAAAGC

consensusID : consensus_9098#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 135
fasta sequence

                              [TCGAGTTTTTCTGTGAATTTAATGTAGAATAGACAAAGAGAGAAAGAGATACACACTGCGTTTATAATAATGAAACAATACGTACGATAATGAATTTTAGTAAAACTCTACTTTAGTCGTATTCAGAAGATGTAA]

[+] EMBL AI977792             [TCGAGTTTTTCTGTGAATTTAATGTAGAATAGACAAAGAGAGAAAGAGATACACACTGCGTTTATAATAATGAAACAATACGTACGATAATGAATTTTAGTAAAACTCTACTTTAGTCGTATTCAGAAGATGTAA]




>consensus_9098#2
TCGAGTTTTTCTGTGAATTTAATGTAGAATAGACAAAGAGAGAAAGAGATACACACTGCG
TTTATAATAATGAAACAATACGTACGATAATGAATTTTAGTAAAACTCTACTTTAGTCGT
ATTCAGAAGATGTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9098#1      ----------------------------------------------------TTGGATTA 8
consensus_9098#2      ------------------------------------------------------------
consensus_9098#0      TCAGACTTTATTGAATTTTTAATGAAACTGTTTTCTTTTCTTTGGTGACTTGTTGTATTA 60
                                                                                  

consensus_9098#1      CGTTGTTACTTTTCTCTCTCTTTGTACCTCTTCTTCTTTTTTGAAAATTGCTCTGTTTGT 68
consensus_9098#2      ------------------------------------------------------------
consensus_9098#0      CGTTGTTACTTTTCTCTCTCTTTGTACCTCTTCTTCTTTTTTGAAAATTGCTCTGTTTGT 120
                                                                                  

consensus_9098#1      AAATGAAATCTTCACATTTATCGATTAATTTCAGAAATTATTCTTGTTTCGCATTTCTAT 128
consensus_9098#2      ------------------------------------------------------------
consensus_9098#0      AAATGAAATCTTCACATTTATCGATTAATTTCAGAAATTATTCTTGTTTCGCATTTCTAT 180
                                                                                  

consensus_9098#1      TTATTATTATTATTATTATTATCACTACTACTGGTGTTTTACAGTTCTCTTCAGTGCAAA 188
consensus_9098#2      ------------------------------------------------------------
consensus_9098#0      TTATTATTATTATTATTATTATCACTACTACTGTTTTTTTACAGTTCTCTTCAGTGCAAA 240
                                                                                  

consensus_9098#1      AGTATTTCTAATATCTTGGACAAAAGCAATTACAAAACGATGATGATGCATGTGTACTTA 248
consensus_9098#2      ------------------------------------------------------------
consensus_9098#0      AGTATTTCTAATATCTTGGACAAAAGCAATTACAAAACGATGATGATGCATGTGTACTTA 300
                                                                                  

consensus_9098#1      TTGTTTCTATGTATGTATTTTGTTCGTTATTCTTTTATCTTGCAATATATATATATATAT 308
consensus_9098#2      ------------------------------------------------------------
consensus_9098#0      TTGTTTCTATGTATGTATTTTGTTCGTTATTCTTTTATCTTGCAATATATATATATATAT 360
                                                                                  

consensus_9098#1      ATATATATATTGATACAATATCAGTCGGTTTCGATTATCTGAGCTTCGTGAATACTGTGT 368
consensus_9098#2      ------------------------------------------------------------
consensus_9098#0      ATATATATATTGATACAATATCAGTCGGTTTCGATTATCTGAGCTTCGTGAATACTGTGT 420
                                                                                  

consensus_9098#1      TTGTGTGTTTTT-----------CTGTGAATTTAA---TGTAGAATAGACAAAGAGAGAA 414
consensus_9098#2      --TCGAGTTTTT-----------CTGTGAATTTAA---TGTAGAATAGACAAAGAGAGAA 44
consensus_9098#0      TTGTGTGTTTTTTGTTCTCTCTTCTGTTATCCTGGGCTTGTTGATCGATTGAAATGATCT 480
                          * ******           **** *   *     *** **       **  **   

consensus_9098#1      AGAGATACACATT---CGTTTATAATAATGAAATAATATTTATGATAAAAAAAAAAAGAA 471
consensus_9098#2      AGAGATACACACTG--CGTTTATAATAATGAAACAATACGTACGATAATGAATTTTAGTA 102
consensus_9098#0      TATGTTGAATATTCTTCGTATGTCAGGGTTCTATAACGGTTTTGTTGAT-ATTCATAATC 539
                         * *  * * *   *** * * *   *   * **    *  * * *  *     *   

consensus_9098#1      AAACCATACTTTAAATAATAAACAGAAGATGAAATACTTCCACTTATCTTCACTTTTTTT 531
consensus_9098#2      AAACTCTACTTTAG-TCGTATTCAGAAGATGTAA-------------------------- 135
consensus_9098#0      AAAC---ATTTCAG-AGTTATTCCAAATATTTTTTGAAGCTAGTTACACTCAGAAACAGT 595
                      ****   * ** *     **  *  ** **                              

consensus_9098#1      TCCCGATTCTTTACTTTTTATACTTTTATTTTTCACAAAATGTTTTTATTCAGTCTCTCT 591
consensus_9098#2      ------------------------------------------------------------
consensus_9098#0      AACTAATTTGTAGTTGATAATAACGTCATATGATTCAACACATCCATTTATTGTTACCGG 655
                                                                                  

consensus_9098#1      TATATTCATTTCTGTTTCAATTCTTTCCTTTCGGAAAACCTGATTACTTTGGAGTTATTG 651
consensus_9098#2      ------------------------------------------------------------
consensus_9098#0      ATTTTTTGCTGATGATT-AATCAGTTATAGTAAAAACACCAGTTCTCGTTAGTTTTTTAG 714
                                                                                  

consensus_9098#1      TTACTGTTGTGTAGGTCGGATGATATTTTTGTCTCTTTTTTTTGTACAATTGTATTTATC 711
consensus_9098#2      ------------------------------------------------------------
consensus_9098#0      TAATGATAGATTGGAGCACTAATCATTTTCCCATGCATTCATACATTTTGTAGTTCTAAG 774
                                                                                  

consensus_9098#1      ATCAGTAAAATATTTCATCCTTCAATTAAATGTTTATTTAATTAAACTGGGTAATATATT 771
consensus_9098#2      ------------------------------------------------------------
consensus_9098#0      AAGTGCGCACTACAACTGGACTACATTTACTTATTCTCTTATCGTCTTACGCTTTCCTCC 834
                                                                                  

consensus_9098#1      TTTATAAACCGGGTTAATACATAAAGC--------------------------------- 798
consensus_9098#2      ------------------------------------------------------------
consensus_9098#0      ACACGTCCAGAATAATCTTTCTCTGTTGTATTTATGTGATTACTGGGGAAGTCACGACAA 894
                                                                                  

consensus_9098#1      ------------------------------------------------------------
consensus_9098#2      ------------------------------------------------------------
consensus_9098#0      TTATGTATTTGTACCGGTCTGCTGCTCAACTGAAATTCTTAGATATTCAGTAGTGACAAT 954
                                                                                  

consensus_9098#1      ------------------------------------------------------------
consensus_9098#2      ------------------------------------------------------------
consensus_9098#0      TTCTGATTGAGTTATTCCATTTCAGTTTGTTTGCCACATGAGGATATGTTTTGTTTTTCC 1014
                                                                                  

consensus_9098#1      ------------------------------------------------------------
consensus_9098#2      ------------------------------------------------------------
consensus_9098#0      AAATCTAGATATTCAAAGATAAATCACAAAATGTATACTATAGTTAATAATAATGTTGAT 1074
                                                                                  

consensus_9098#1      ----------------------------------------------------------
consensus_9098#2      ----------------------------------------------------------
consensus_9098#0      TTAAATGATTTAAAACGAAAAAAAAATGAAAAGCTCCTCGTGCCGAATTTTGGCTCGA 1132