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Schistosoma mansoni
cluster # 9103 cluster # 9103       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9103#0 length = 1211 sequences # 5  
consensus_9103#1 length = 795 sequences # 3  

consensusID : consensus_9103#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1211
fasta sequence
                              [ACTCTTAAAGGATACTTCTGATTGGCAACGTTCAACCGGTCCCGAATTAGATGGGTCTTCTAATTATTTTACTGATTTGCCTGTATTAGTCATGACACCTATCAATGAAATGATTGGTAAAGGTAATTTATTACATTATCTGGGAAATGCTGTAAGAGAACAATTTTTTACTCAA-TGTGTTGAAGAGATGGCGCTTTTCGTGAAAGATTACGATGATGATATTAAAAAGTACCGAGCAGCCTACATACAAGACAGATCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAATGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGATGAATTGGCTGAAGATTCACATCTTAAAGGGAACCTGACAGCTAGGATTAGTCATTTGAAATCAGAATATGAAAAAGTAGCTGAACAATGGATAGCTTA-TGCTGAAGAAACAGTATTCATGGATTTA-AATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCTGGTTGGTACATTAGCCGATTATGACGAAACACTGAAGCATACAAGACAAAATTTTTATGATAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAGCCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACGAGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACGGATACTAGAGTTCCCCTCTGCTGATGTATACATCAGAACCNNNNNNCCCCGGATGTCTCAGAAAAANAAATCTCACATAAGTTTGGTCGAGGATAAAAGGAGCNNNNNNNNNNNNNNNANCNAGCTCGGCTACGAGATGCAACTACGTCATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTACANNNNATTTNTGTAGAAAGGAACCCATTTTTTTCTCCTTTTGGGCCAAAAGGGGGTCCAAATTTTTCTTTTCCGGAAGGGGTTTCAAAACCGGGTTTTTAAAATTTTAAAGGGAACCCCCTGTCACTTCCAACTTTGTGTTTTTTGTTTTCGCCCGGGAACCCCCTTTATTTAAACCGGGGGAAAAACAAAGG]

[-] EMBL CD189669             [ACTCTTAAAGGATACTTCTGATTGGCAACGTTCAACCGGTCCCGAATTAGATGGGTCTTCTAATTATTTTACTGATTTGCCTGTATTAGTCATGACACCTATCAATGAAATGATTGGTAAAGGTAATTTATTACATTATCTGGGAAATGCTGTAAGAGAACAATTTTTTACTCAA TGTGTTGAAGAGATGGCGCTTTTCGTGAAAGATTACGATGATGATATTAAAAAGTACCGAGCAGCCTACATACAAGACAGATCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAATGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGATGAATTGGCTGAAGATTCACATCTTAAAGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD157701             [                                                                                                                                                                  tagTTGTACTCAAGTG GGAGAAGAGATGGCGCTTTTCGTGAAAGATTACGATGATGATATTAAAAAGTACCGAGCAGCCTACATACAAGACAGATCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAATGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGATGAATTGGCTGAAGATTCACATCTTAAAGGGGACCTGACAGCTAGGATTAGTCATTTGAAATCAG ATATGANAAAGTAGCTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD092289             [                                                                                                                                                                                                                                              nGCCTTCATACAAGACAGATCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAATGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGACGAATTGGCTGAAGATTCACATCTTAAAGGGAACCTGACAGCTAGGATTAGTCATTTGAAATCAGAATATGAAAAAGTAGCTGAACAATGGATAGCTTA TGCTGAAGAAACAGTATTCATGGATTTA AATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD092387             [                                                                                                                                                                                                                                                                 TCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAATGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGACGAATTGGCTGAAGATTCACATCTTAAAGGGAACCTGACAGCTAGGATTAGTCATTTGAAATCAGAATATGAAAAAGTAGCTGAACAATGGATAGCTTA TGCTGAAGAAACAGTATTCATGGATTTA AATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD083143             [                                                                                                                                                                                                                                                                                                                                                                                                                                             gcacgaGGA ACCTTANTGCTGAAGAAACAGTATTCATGGATTTATAATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCTGGTTGGTACATTAGCCGATTATGACGAAACACTGAAGCATACAAGACAAAATTTTTATGATAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAGCCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACGAGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACGGATACTAGAGTTCCCCTCTGCTGATGTATACATCAGAACCNNNNNNCCCCGGATGTCTCAGAAAAANAAATCTCACATAAGTTTGGTCGAGGATAAAAGGAGCNNNNNNNNNNNNNNNANCNAGCTCGGCTACGAGATGCAACTACGTCATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTACANNNNATTTNTGTAGAAAGGAACCCATTTTTTTCTCCTTTTGGGCCAAAAGGGGGTCCAAATTTTTCTTTTCCGGAAGGGGTTTCAAAACCGGGTTTTTAAAATTTTAAAGGGAACCCCCTGTCACTTCCAACTTTGTGTTTTTTGTTTTCGCCCGGGAACCCCCTTTATTTAAACCGGGGGAAAAACAAAGG]


>consensus_9103#0 ACTCTTAAAGGATACTTCTGATTGGCAACGTTCAACCGGTCCCGAATTAGATGGGTCTTC TAATTATTTTACTGATTTGCCTGTATTAGTCATGACACCTATCAATGAAATGATTGGTAA AGGTAATTTATTACATTATCTGGGAAATGCTGTAAGAGAACAATTTTTTACTCAATGTGT TGAAGAGATGGCGCTTTTCGTGAAAGATTACGATGATGATATTAAAAAGTACCGAGCAGC CTACATACAAGACAGATCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAA TGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGATGAATTGGCTGAAGA TTCACATCTTAAAGGGAACCTGACAGCTAGGATTAGTCATTTGAAATCAGAATATGAAAA AGTAGCTGAACAATGGATAGCTTATGCTGAAGAAACAGTATTCATGGATTTAAATCGTGT ACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCT GGTTGGTACATTAGCCGATTATGACGAAACACTGAAGCATACAAGACAAAATTTTTATGA TAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAG CCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACG AGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAAT TGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACGGATACTAGAGT TCCCCTCTGCTGATGTATACATCAGAACCNNNNNNCCCCGGATGTCTCAGAAAAANAAAT CTCACATAAGTTTGGTCGAGGATAAAAGGAGCNNNNNNNNNNNNNNNANCNAGCTCGGCT ACGAGATGCAACTACGTCATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTACAN NNNATTTNTGTAGAAAGGAACCCATTTTTTTCTCCTTTTGGGCCAAAAGGGGGTCCAAAT TTTTCTTTTCCGGAAGGGGTTTCAAAACCGGGTTTTTAAAATTTTAAAGGGAACCCCCTG TCACTTCCAACTTTGTGTTTTTTGTTTTCGCCCGGGAACCCCCTTTATTTAAACCGGGGG AAAAACAAAGG



consensusID : consensus_9103#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 795
fasta sequence
                              [GATAGCTTATGCTGAAGAAACAGTATTCATGGATTTAAATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCTGGTTGGTACATTAGCCGATTATGACGAAACACTGAAG-CATACAAGACAAAATTTATATGATAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAGCCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACGAGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACTGATACATCAATGTTACCCTTGGATATTGCTAATTTGAAACGTCAATTTCCTGATGTTCGTTCTGATCAAGTTTATGCGTTGCTTGTGGCTCGTGGAGATGTTTCATCAGACAATGCTAAAGGACTTTCGGCGGACTCTCATTACGGGAGGGAATTGTCACAGAAGCCATCACCGTTCGCAATTTTCACACGATTAGTCGTTGCAATGGACACGCATTAGTGTTCACCTTTTGGCCGAAAAAGGGATGCAAAATTTATCAATTTCGCGACTGGTTTTTTCAATCCTGATTTTTTTAAATCTTTACGATGTAATCACCTTGTTACTTTCCACATTCTGTTTATTTGTCTTATGCTTCGGATAAACCCCTATATTAAATCACGTATGTAATACTAACAACGGTA]

[+] EMBL CD079766             [GATAGCTTATGCTGAAGAAACAGTATTCATGGATTTAAATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCTGGTTGGTACATTAGCCGATTATGACGAAACACTGAAG CATACAAGACAAAATTTATATGATAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAGCCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACGAGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACTGATACATCAATGTTACCCTTGGATATTGCTAATTTGAAACGTCAATTTCCTGATGTTCGTTCTGATCAAGTTTATGCGTTGCTTGTGGCTCGTGGAGATGTTTCATCAGACAATGCTAAAGGACTTTCGGCGGACTCTCATTACGGGAGGGAATTGTCACAGAAGCCATCACCGTTCGCAATTTTCACACGATTAGTCGTTGCAATGGACACGCATTAGTGTTCACCTTTTGGCCGAAAAGGGGATGCANAATTTATCAATTTC                                                                                                                                         ]
[-] EMBL CD074026             [                                                                                                                                          GAAGCCAT CAAGACAAAATTTATATGATAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAGCCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACGAGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACTGATACATCAATGTTACCCTTGGATATTGCTAATTTGAAACGTCAATTTCCTGATGTTCGTTCTGATCAAGTTTATGCGTTGCTTGTGGCTCGTGGAGATGTTTCATCAGACAATGCTAAAGGACTTTCGGCGGACTCTCATTACGGGAGGGAATTGTCACAGAAGCCATCACCGTTCGCAATTTTCACACGATTAGTCGTTGCAATGGACACGCATTAGTGTTCACCTTTTGGCCGAAAAAGGGATGCAAAATTTATCAATTTCGCGACTGGTTTTTTCAATCCTGATTTTTTTAAATCTTTACGATGTAATCACCTTGTTACTTTCCACATTCTGTTTATTTGTCTTATGCTTCGGATAAACCCCTATATTAAATCACGTATGTAATACTAACAACGGTA]
[-] EMBL CD076714             [                                                                                                                                                                                                                                                                                                                                                   AAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACTGATACATCAATGTTACCCTTGGATATTGCTAATTTGAAACGTCAATTTCCTGATGTTCGTTCTGATCAAGTTTATGCGTTGCTTGTGGCTCGTGGAGATGTTTCATCAGACAATGTTAAAGGACTTTCGGCGGACTCTCATTACGGGAGGGAATTGTCACAGAAGCCATCCCCGTTCGCAATTTTCACACGATTAGTCGTTGCAATGGACACGCATTAGTGTTCCCCTTTTGGCCGAAAAAGGGATGCAAAATTTATCAATTTCGCGACTGGTTTTTTCAATCCTGATTTTTTTAAATCTTTATAATGTAATCCCCTTGTTACTTTCCACATTCTGTTTATTTGTCTTATGCTTCGGATAAACCCCTATATTAAATCACGTATGTAATACTAACAACGGTA]


>consensus_9103#1 GATAGCTTATGCTGAAGAAACAGTATTCATGGATTTAAATCGTGTACTGAGCGTGATTAT GACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCTGGTTGGTACATTAGC CGATTATGACGAAACACTGAAGCATACAAGACAAAATTTATATGATAAATTAGCTGAAAA ATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAGCCGACGAAGTCCACT TTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACGAGATGGACATGATTT GAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAATTGTGGCCTACGACGC TTTAACAACTATCGGTCAGTTGTTCCTTACAACTGATACATCAATGTTACCCTTGGATAT TGCTAATTTGAAACGTCAATTTCCTGATGTTCGTTCTGATCAAGTTTATGCGTTGCTTGT GGCTCGTGGAGATGTTTCATCAGACAATGCTAAAGGACTTTCGGCGGACTCTCATTACGG GAGGGAATTGTCACAGAAGCCATCACCGTTCGCAATTTTCACACGATTAGTCGTTGCAAT GGACACGCATTAGTGTTCACCTTTTGGCCGAAAAAGGGATGCAAAATTTATCAATTTCGC GACTGGTTTTTTCAATCCTGATTTTTTTAAATCTTTACGATGTAATCACCTTGTTACTTT CCACATTCTGTTTATTTGTCTTATGCTTCGGATAAACCCCTATATTAAATCACGTATGTA ATACTAACAACGGTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9103#0      ACTCTTAAAGGATACTTCTGATTGGCAACGTTCAACCGGTCCCGAATTAGATGGGTCTTC 60
consensus_9103#1      ------------------------------------------------------------
                                                                                  

consensus_9103#0      TAATTATTTTACTGATTTGCCTGTATTAGTCATGACACCTATCAATGAAATGATTGGTAA 120
consensus_9103#1      ------------------------------------------------------------
                                                                                  

consensus_9103#0      AGGTAATTTATTACATTATCTGGGAAATGCTGTAAGAGAACAATTTTTTACTCAATGTGT 180
consensus_9103#1      ------------------------------------------------------------
                                                                                  

consensus_9103#0      TGAAGAGATGGCGCTTTTCGTGAAAGATTACGATGATGATATTAAAAAGTACCGAGCAGC 240
consensus_9103#1      ------------------------------------------------------------
                                                                                  

consensus_9103#0      CTACATACAAGACAGATCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAA 300
consensus_9103#1      ------------------------------------------------------------
                                                                                  

consensus_9103#0      TGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGATGAATTGGCTGAAGA 360
consensus_9103#1      ------------------------------------------------------------
                                                                                  

consensus_9103#0      TTCACATCTTAAAGGGAACCTGACAGCTAGGATTAGTCATTTGAAATCAGAATATGAAAA 420
consensus_9103#1      ------------------------------------------------------------
                                                                                  

consensus_9103#0      AGTAGCTGAACAATGGATAGCTTATGCTGAAGAAACAGTATTCATGGATTTAAATCGTGT 480
consensus_9103#1      ---------------GATAGCTTATGCTGAAGAAACAGTATTCATGGATTTAAATCGTGT 45
                                     *********************************************

consensus_9103#0      ACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCT 540
consensus_9103#1      ACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCT 105
                      ************************************************************

consensus_9103#0      GGTTGGTACATTAGCCGATTATGACGAAACACTGAAGCATACAAGACAAAATTTTTATGA 600
consensus_9103#1      GGTTGGTACATTAGCCGATTATGACGAAACACTGAAGCATACAAGACAAAATTTATATGA 165
                      ****************************************************** *****

consensus_9103#0      TAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAG 660
consensus_9103#1      TAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAG 225
                      ************************************************************

consensus_9103#0      CCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACG 720
consensus_9103#1      CCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACG 285
                      ************************************************************

consensus_9103#0      AGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAAT 780
consensus_9103#1      AGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAAT 345
                      ************************************************************

consensus_9103#0      TGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACGGATAC--TAGA 838
consensus_9103#1      TGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACTGATACATCAAT 405
                      ************************************************ *****   *  

consensus_9103#0      GTTCCCCTCTGCTGATGTATACATCAGAACCNNNNNNCCCCGGATGTCTCAGAAAAANAA 898
consensus_9103#1      GTTACCCTTGGATATTGC-TA-ATTTGAAACGTCAATTTCCTGATGT-TCGTTCTGATCA 462
                      *** ****  * *  **  ** **  *** *        ** ***** **      *  *

consensus_9103#0      ATCTCACATAAGTTTGGTCGAGGATAAAAGGAGCNNNNNNNNNNNNNNNANCNAGCTCGG 958
consensus_9103#1      AGTTTATGCGTTGCTTGTGGCTCGTGGAGATGTTTCATCAGACAATGCTAAAGGACTTT- 521
                      *  * *        * ** *    *  *                     *     **   

consensus_9103#0      CTACGAGATGCAACTACGTCATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAC 1018
consensus_9103#1      CGGCGGACTCTCATTACGGGAGGGAATTGTCACAGAAGCCATCACCGTTCGCAATTTT-C 580
                      *  **   *   * ****  *                                 **** *

consensus_9103#0      ANNNNATTTNT-GTAGAAAGGAACCCATTTTT---TTCTCCTTTTGGGCCAAAAGGGGGT 1074
consensus_9103#1      ACACGATTAGTCGTTGCAATGGACACGCATTAGTGTTCACCTTTTGGCCGAAAAAGGGAT 640
                      *    ***  * ** * ** * ** *   **    *** ******** * **** *** *

consensus_9103#0      CCAAATTTT-TCTTTTCCGGAAGGGGTTT---CAAAACCGGGTTTTTAAAATTTTAAAGG 1130
consensus_9103#1      GCAAAATTTATCAATTTCGCGACTGGTTTTTTCAATCCTGATTTTTTTAAATCTTTACGA 700
                       **** *** **  ** **  *  *****   ***  * *  ***** **** ** * * 

consensus_9103#0      ---GAACCCCCTGTCACTTCCAACTTTGTGTTT-TTTGTTTT---CGCCCGGGAACCCCC 1183
consensus_9103#1      TGTAATCACCTTGTTACTTTCCACATTCTGTTTATTTGTCTTATGCTTCGGATAAACCCC 760
                          * * ** *** **** * ** ** ***** ***** **   *  * *  ** ****

consensus_9103#0      TTTATTTAAAC-CGGGGGAAAAACAAAGG------ 1211
consensus_9103#1      TATATTAAATCACGTATGTAATACTAACAACGGTA 795
                      * **** ** * **   * ** ** **        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)