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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9103#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1211 fasta sequence
[ACTCTTAAAGGATACTTCTGATTGGCAACGTTCAACCGGTCCCGAATTAGATGGGTCTTCTAATTATTTTACTGATTTGCCTGTATTAGTCATGACACCTATCAATGAAATGATTGGTAAAGGTAATTTATTACATTATCTGGGAAATGCTGTAAGAGAACAATTTTTTACTCAA-TGTGTTGAAGAGATGGCGCTTTTCGTGAAAGATTACGATGATGATATTAAAAAGTACCGAGCAGCCTACATACAAGACAGATCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAATGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGATGAATTGGCTGAAGATTCACATCTTAAAGGGAACCTGACAGCTAGGATTAGTCATTTGAAATCAGAATATGAAAAAGTAGCTGAACAATGGATAGCTTA-TGCTGAAGAAACAGTATTCATGGATTTA-AATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCTGGTTGGTACATTAGCCGATTATGACGAAACACTGAAGCATACAAGACAAAATTTTTATGATAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAGCCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACGAGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACGGATACTAGAGTTCCCCTCTGCTGATGTATACATCAGAACCNNNNNNCCCCGGATGTCTCAGAAAAANAAATCTCACATAAGTTTGGTCGAGGATAAAAGGAGCNNNNNNNNNNNNNNNANCNAGCTCGGCTACGAGATGCAACTACGTCATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTACANNNNATTTNTGTAGAAAGGAACCCATTTTTTTCTCCTTTTGGGCCAAAAGGGGGTCCAAATTTTTCTTTTCCGGAAGGGGTTTCAAAACCGGGTTTTTAAAATTTTAAAGGGAACCCCCTGTCACTTCCAACTTTGTGTTTTTTGTTTTCGCCCGGGAACCCCCTTTATTTAAACCGGGGGAAAAACAAAGG]
[-] EMBL CD189669 [ACTCTTAAAGGATACTTCTGATTGGCAACGTTCAACCGGTCCCGAATTAGATGGGTCTTCTAATTATTTTACTGATTTGCCTGTATTAGTCATGACACCTATCAATGAAATGATTGGTAAAGGTAATTTATTACATTATCTGGGAAATGCTGTAAGAGAACAATTTTTTACTCAA TGTGTTGAAGAGATGGCGCTTTTCGTGAAAGATTACGATGATGATATTAAAAAGTACCGAGCAGCCTACATACAAGACAGATCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAATGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGATGAATTGGCTGAAGATTCACATCTTAAAGGGA ]
[+] EMBL CD157701 [ tagTTGTACTCAAGTG GGAGAAGAGATGGCGCTTTTCGTGAAAGATTACGATGATGATATTAAAAAGTACCGAGCAGCCTACATACAAGACAGATCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAATGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGATGAATTGGCTGAAGATTCACATCTTAAAGGGGACCTGACAGCTAGGATTAGTCATTTGAAATCAG ATATGANAAAGTAGCTGAA ]
[+] EMBL CD092289 [ nGCCTTCATACAAGACAGATCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAATGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGACGAATTGGCTGAAGATTCACATCTTAAAGGGAACCTGACAGCTAGGATTAGTCATTTGAAATCAGAATATGAAAAAGTAGCTGAACAATGGATAGCTTA TGCTGAAGAAACAGTATTCATGGATTTA AATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTAC ]
[+] EMBL CD092387 [ TCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAATGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGACGAATTGGCTGAAGATTCACATCTTAAAGGGAACCTGACAGCTAGGATTAGTCATTTGAAATCAGAATATGAAAAAGTAGCTGAACAATGGATAGCTTA TGCTGAAGAAACAGTATTCATGGATTTA AATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTAC ]
[+] EMBL CD083143 [ gcacgaGGA ACCTTANTGCTGAAGAAACAGTATTCATGGATTTATAATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCTGGTTGGTACATTAGCCGATTATGACGAAACACTGAAGCATACAAGACAAAATTTTTATGATAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAGCCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACGAGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACGGATACTAGAGTTCCCCTCTGCTGATGTATACATCAGAACCNNNNNNCCCCGGATGTCTCAGAAAAANAAATCTCACATAAGTTTGGTCGAGGATAAAAGGAGCNNNNNNNNNNNNNNNANCNAGCTCGGCTACGAGATGCAACTACGTCATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTACANNNNATTTNTGTAGAAAGGAACCCATTTTTTTCTCCTTTTGGGCCAAAAGGGGGTCCAAATTTTTCTTTTCCGGAAGGGGTTTCAAAACCGGGTTTTTAAAATTTTAAAGGGAACCCCCTGTCACTTCCAACTTTGTGTTTTTTGTTTTCGCCCGGGAACCCCCTTTATTTAAACCGGGGGAAAAACAAAGG]
consensusID : consensus_9103#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 795 fasta sequence
[GATAGCTTATGCTGAAGAAACAGTATTCATGGATTTAAATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCTGGTTGGTACATTAGCCGATTATGACGAAACACTGAAG-CATACAAGACAAAATTTATATGATAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAGCCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACGAGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACTGATACATCAATGTTACCCTTGGATATTGCTAATTTGAAACGTCAATTTCCTGATGTTCGTTCTGATCAAGTTTATGCGTTGCTTGTGGCTCGTGGAGATGTTTCATCAGACAATGCTAAAGGACTTTCGGCGGACTCTCATTACGGGAGGGAATTGTCACAGAAGCCATCACCGTTCGCAATTTTCACACGATTAGTCGTTGCAATGGACACGCATTAGTGTTCACCTTTTGGCCGAAAAAGGGATGCAAAATTTATCAATTTCGCGACTGGTTTTTTCAATCCTGATTTTTTTAAATCTTTACGATGTAATCACCTTGTTACTTTCCACATTCTGTTTATTTGTCTTATGCTTCGGATAAACCCCTATATTAAATCACGTATGTAATACTAACAACGGTA]
[+] EMBL CD079766 [GATAGCTTATGCTGAAGAAACAGTATTCATGGATTTAAATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCTGGTTGGTACATTAGCCGATTATGACGAAACACTGAAG CATACAAGACAAAATTTATATGATAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAGCCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACGAGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACTGATACATCAATGTTACCCTTGGATATTGCTAATTTGAAACGTCAATTTCCTGATGTTCGTTCTGATCAAGTTTATGCGTTGCTTGTGGCTCGTGGAGATGTTTCATCAGACAATGCTAAAGGACTTTCGGCGGACTCTCATTACGGGAGGGAATTGTCACAGAAGCCATCACCGTTCGCAATTTTCACACGATTAGTCGTTGCAATGGACACGCATTAGTGTTCACCTTTTGGCCGAAAAGGGGATGCANAATTTATCAATTTC ]
[-] EMBL CD074026 [ GAAGCCAT CAAGACAAAATTTATATGATAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAGCCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACGAGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACTGATACATCAATGTTACCCTTGGATATTGCTAATTTGAAACGTCAATTTCCTGATGTTCGTTCTGATCAAGTTTATGCGTTGCTTGTGGCTCGTGGAGATGTTTCATCAGACAATGCTAAAGGACTTTCGGCGGACTCTCATTACGGGAGGGAATTGTCACAGAAGCCATCACCGTTCGCAATTTTCACACGATTAGTCGTTGCAATGGACACGCATTAGTGTTCACCTTTTGGCCGAAAAAGGGATGCAAAATTTATCAATTTCGCGACTGGTTTTTTCAATCCTGATTTTTTTAAATCTTTACGATGTAATCACCTTGTTACTTTCCACATTCTGTTTATTTGTCTTATGCTTCGGATAAACCCCTATATTAAATCACGTATGTAATACTAACAACGGTA]
[-] EMBL CD076714 [ AAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACTGATACATCAATGTTACCCTTGGATATTGCTAATTTGAAACGTCAATTTCCTGATGTTCGTTCTGATCAAGTTTATGCGTTGCTTGTGGCTCGTGGAGATGTTTCATCAGACAATGTTAAAGGACTTTCGGCGGACTCTCATTACGGGAGGGAATTGTCACAGAAGCCATCCCCGTTCGCAATTTTCACACGATTAGTCGTTGCAATGGACACGCATTAGTGTTCCCCTTTTGGCCGAAAAAGGGATGCAAAATTTATCAATTTCGCGACTGGTTTTTTCAATCCTGATTTTTTTAAATCTTTATAATGTAATCCCCTTGTTACTTTCCACATTCTGTTTATTTGTCTTATGCTTCGGATAAACCCCTATATTAAATCACGTATGTAATACTAACAACGGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9103#0 ACTCTTAAAGGATACTTCTGATTGGCAACGTTCAACCGGTCCCGAATTAGATGGGTCTTC 60
consensus_9103#1 ------------------------------------------------------------
consensus_9103#0 TAATTATTTTACTGATTTGCCTGTATTAGTCATGACACCTATCAATGAAATGATTGGTAA 120
consensus_9103#1 ------------------------------------------------------------
consensus_9103#0 AGGTAATTTATTACATTATCTGGGAAATGCTGTAAGAGAACAATTTTTTACTCAATGTGT 180
consensus_9103#1 ------------------------------------------------------------
consensus_9103#0 TGAAGAGATGGCGCTTTTCGTGAAAGATTACGATGATGATATTAAAAAGTACCGAGCAGC 240
consensus_9103#1 ------------------------------------------------------------
consensus_9103#0 CTACATACAAGACAGATCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAA 300
consensus_9103#1 ------------------------------------------------------------
consensus_9103#0 TGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGATGAATTGGCTGAAGA 360
consensus_9103#1 ------------------------------------------------------------
consensus_9103#0 TTCACATCTTAAAGGGAACCTGACAGCTAGGATTAGTCATTTGAAATCAGAATATGAAAA 420
consensus_9103#1 ------------------------------------------------------------
consensus_9103#0 AGTAGCTGAACAATGGATAGCTTATGCTGAAGAAACAGTATTCATGGATTTAAATCGTGT 480
consensus_9103#1 ---------------GATAGCTTATGCTGAAGAAACAGTATTCATGGATTTAAATCGTGT 45
*********************************************
consensus_9103#0 ACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCT 540
consensus_9103#1 ACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCT 105
************************************************************
consensus_9103#0 GGTTGGTACATTAGCCGATTATGACGAAACACTGAAGCATACAAGACAAAATTTTTATGA 600
consensus_9103#1 GGTTGGTACATTAGCCGATTATGACGAAACACTGAAGCATACAAGACAAAATTTATATGA 165
****************************************************** *****
consensus_9103#0 TAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAG 660
consensus_9103#1 TAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAG 225
************************************************************
consensus_9103#0 CCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACG 720
consensus_9103#1 CCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACG 285
************************************************************
consensus_9103#0 AGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAAT 780
consensus_9103#1 AGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAAT 345
************************************************************
consensus_9103#0 TGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACGGATAC--TAGA 838
consensus_9103#1 TGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACTGATACATCAAT 405
************************************************ ***** *
consensus_9103#0 GTTCCCCTCTGCTGATGTATACATCAGAACCNNNNNNCCCCGGATGTCTCAGAAAAANAA 898
consensus_9103#1 GTTACCCTTGGATATTGC-TA-ATTTGAAACGTCAATTTCCTGATGT-TCGTTCTGATCA 462
*** **** * * ** ** ** *** * ** ***** ** * *
consensus_9103#0 ATCTCACATAAGTTTGGTCGAGGATAAAAGGAGCNNNNNNNNNNNNNNNANCNAGCTCGG 958
consensus_9103#1 AGTTTATGCGTTGCTTGTGGCTCGTGGAGATGTTTCATCAGACAATGCTAAAGGACTTT- 521
* * * * ** * * * * **
consensus_9103#0 CTACGAGATGCAACTACGTCATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAC 1018
consensus_9103#1 CGGCGGACTCTCATTACGGGAGGGAATTGTCACAGAAGCCATCACCGTTCGCAATTTT-C 580
* ** * * **** * **** *
consensus_9103#0 ANNNNATTTNT-GTAGAAAGGAACCCATTTTT---TTCTCCTTTTGGGCCAAAAGGGGGT 1074
consensus_9103#1 ACACGATTAGTCGTTGCAATGGACACGCATTAGTGTTCACCTTTTGGCCGAAAAAGGGAT 640
* *** * ** * ** * ** * ** *** ******** * **** *** *
consensus_9103#0 CCAAATTTT-TCTTTTCCGGAAGGGGTTT---CAAAACCGGGTTTTTAAAATTTTAAAGG 1130
consensus_9103#1 GCAAAATTTATCAATTTCGCGACTGGTTTTTTCAATCCTGATTTTTTTAAATCTTTACGA 700
**** *** ** ** ** * ***** *** * * ***** **** ** * *
consensus_9103#0 ---GAACCCCCTGTCACTTCCAACTTTGTGTTT-TTTGTTTT---CGCCCGGGAACCCCC 1183
consensus_9103#1 TGTAATCACCTTGTTACTTTCCACATTCTGTTTATTTGTCTTATGCTTCGGATAAACCCC 760
* * ** *** **** * ** ** ***** ***** ** * * * ** ****
consensus_9103#0 TTTATTTAAAC-CGGGGGAAAAACAAAGG------ 1211
consensus_9103#1 TATATTAAATCACGTATGTAATACTAACAACGGTA 795
* **** ** * ** * ** ** **
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||