These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9105#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 549 fasta sequence [TTTTTTTTTTTTTTTTTTTCCTTAAAAATATTAACTGATATTTTATATAACAATGTCAAACAAAATAATTGGGTTTGTCAATATTCACAAAATAGTAGACAGTACATTTGGATATACAATTAGTGGTTTTCTTATTTACCACGAAATCCTCCACCACGGCCAGGACCACCAGGCACACTCCCGCCACGCCCTGCTCCTCCACGACCTCGATTATTAGGGGCGTTACCACCTCGACCTCTAGCCTTATTTCTATGAAAACCCCCACGCCCAGTATCTGCAGACTGAGAACGATTACGCATTTTGGCCAGCTGCAA-GTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTATTTTATT-ATGCTTCC-ACG-AATATAACACTCCGGCATTT-TCC-AGAA-GCGATCCCCATCTCGAGATGTACAAATAACTTCTTTAAGATGAATGTTCATCCAGTCATCGCCAGGCGACAAGGTGGCCGTTATAAGTTCTCACCACTTTTCAATTCACCGAGAATATGAAAATCCGTTGCACCCTTGAGGGATG] [+] EMBL AI395646 [TTTTTTTTTTTTTTTTTTTCCTTAAAAATATTAACTGATATTTTATATAACAATGTCAAACAAAATAATTGGGTTTGTCAATATTCACAAAATAGTAGACAGTACATTTGGATATACAATTAGTGGTTTTCTTATTTACCACGAAATCCTCCACCACGGCCAGGACCACCAGGCACACTCCCGCCACGCCCTGCTCCTCCACGACCTCGATTATTAGGGGCGTTACCACCTCGACCTCTATCCTTATTTCTATGAAAACCCCCACGCCCAGTATCTGCAGACTGAGAACGATTACGCATTTTGGCCAGCTGCAA GTCCTCTTTAACCTTATCAATTACGTCGTCGGGAATCCGTAAGTATTTTATT ATGCTTCC ACG AATAAAACACTCCCGGATTT TCCTAAAA GCGATCCCCACCTCGAGAAGTAAACATAACTTCTTTAAGATGAATGTGCATCCAGGCCACGCCAGGCGAAAGGGTGGGCGTTATAAGTTCAAACAACTTTTCAATTAACCGAGAATATGAAAATCCGTTGCACCCTTGAGGGATG] [-] EMBL CD135121 [ ACCACCAGGCACACTCCCGTCACGCCCTGCTCCTCCACGACCTCGATTATTAGGGGCGTTACCACCTCGACCTCTAGCCTTATTTCTATGTGTACAACCACGGCCAGTATCTGCAGACTGAGATCGATTACGCATTTTGGCCAGCTGCAATGTGCTCGTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTATTTTATTCATGCTTCCTACGTAATATAACACTCCGGCATTTCTCC AGAATGCGATTCGCATCTCGAGATGTACAAATAtgttact ] [+] EMBL CD144405 [ CTCCTCCACGACCTCGATTATTAGGGGCGTTACCACCTCGACCTCTAGCCTTATTTCTATGAAAACCCCCACGCCCAGTATCTGCAGACTGAGAACGATTACGCATTTTGGCCAGCTGCAA GTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTATTTTATT ATGCTTCC ACG AATATAACACTCCGGCATTT TCC AGAA GCGATCCCCATCTCGAGATGTACAAATAACTTCTTTAAGATGAATGTT ] [+] EMBL CD141111 [ ATTATTAGGGGCGTTACCACCTCGACCTCTAGCCTTATTTCTATGAAAACCCCTACGCCCAGTATCTGCAGACTGAGAACGATTACGCATTTTGGCCAGCTGCAA GTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTATTTTATT ATGCTTCC ACG AATATAACACTCCGGCATTT TCC AGAA GCGATCCCCATCTCGAGATGTACAAATAACTTCTTTAAGATGAATGTTCATCCAGTCATCG CAAGCGACAAGGTGGCCGTTATAAG TCTCACCACTTTTCTATTC ] [-] EMBL CD135256 [ ATTAGGGGCGTTACCACCTCGACCTCTAGCCTTATTTCTATGAAAACCCCCACGCCCAGTATCTGCAGACTGAGAACGATTACGCATTTTGGCCAGCTGCAA GTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTATTTTATT ATGCTTCC ACG AATATAACACTCCGGCATTT TCC AGAA GCGATCCCCATCTCGAGATGTACAAATAACTTCTTTAAGATGAATGTTCATCCAGT ] [-] EMBL CD146653 [ CTTATTTCTATGAAAACCCCCACGCCCAGTATCTGCAGACTGAGAACGATTACGCATTTTGGCCAGCTGCAA GTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTATTTTATT ATGCTTCC ACG AATATAACACTCCGGCATTT TCC AGAA GCGATCCCCATCTCGAGATGTACAAATAACTTCTTTAAGATGAATGTTCATCCAGTCATCG CAAGCGACAAGGTGGCCGTTATAAGTT TCACCACTTTTCAATTCAACGAGCATAGGAAGATTCGT ] [-] EMBL BG932839 [ TTTATT ATGCTTCC ACG AATATAACACTCCGGCATTT TCC AGAA GCGATCCCCATCTCGAGATGTACAAATAACTTCTCTAAGATGAATGTTCATCCAGTCATCGCAAGc ] consensusID : consensus_9105#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [ACTGAGAACGATTACGCATTTTGGCCAGCTGCAAGTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTATTTTATTATGCTTCCACGAATATAACACTCCGGCATTTTCCAGAAGCGATCCCCATCCTATGGAGTGTAAGCTCAGCATATTTATAGGATTTACTCGAGATGTACAAATAACTTCTTTAAGATGAATGTTCATCCAGTCATCGCAAGCGACAAGGTGGCCGTTATAAGTTTCACCACTTTTCAATTCAACGAGCATAGGAAGATTCGTTGCAGCCTTGAGGAGTGTCACAGGTAACATTGAGGAATGCAATTAGGCGCCTAATATTT] [+] EMBL CD097575 [ACTGAGAACGATTACGCATTTTGGCCAGCTGCAAGTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTATTTTATTATGCTTCCACGAATATAACACTCCGGCATTTTCCAGAAGCGATCCCCATCCTATGGAGTGTAAGCTCAGCATATTTATAGGATTTACTCGAGATGTACAAATAACTTCTTTAAGATGAATGTTCATCCAGTCATCGCAAGCGACAAGGTGGCCGTTATAAGTTTCACCACTTTTCAATTCAACGAGCATAGGAAGATTCGTTGCAGCCTTGAGGAGTGTCACAGGTAACATTGAGGAATGCAATTAGGCGCCTAATATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9105#0 TTTTTTTTTTTTTTTTTTTCCTTAAAAATATTAACTGATATTTTATATAACAATGTCAAA 60 consensus_9105#1 ------------------------------------------------------------ consensus_9105#0 CAAAATAATTGGGTTTGTCAATATTCACAAAATAGTAGACAGTACATTTGGATATACAAT 120 consensus_9105#1 ------------------------------------------------------------ consensus_9105#0 TAGTGGTTTTCTTATTTACCACGAAATCCTCCACCACGGCCAGGACCACCAGGCACACTC 180 consensus_9105#1 ------------------------------------------------------------ consensus_9105#0 CCGCCACGCCCTGCTCCTCCACGACCTCGATTATTAGGGGCGTTACCACCTCGACCTCTA 240 consensus_9105#1 ------------------------------------------------------------ consensus_9105#0 GCCTTATTTCTATGAAAACCCCCACGCCCAGTATCTGCAGACTGAGAACGATTACGCATT 300 consensus_9105#1 ----------------------------------------ACTGAGAACGATTACGCATT 20 ******************** consensus_9105#0 TTGGCCAGCTGCAAGTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTAT 360 consensus_9105#1 TTGGCCAGCTGCAAGTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTAT 80 ************************************************************ consensus_9105#0 TTTATTATGCTTCCACGAATATAACACTCCGGCATTTTCCAGAAGCGATCCCCATC---- 416 consensus_9105#1 TTTATTATGCTTCCACGAATATAACACTCCGGCATTTTCCAGAAGCGATCCCCATCCTAT 140 ******************************************************** consensus_9105#0 ---------------------------------TCGAGATGTACAAATAACTTCTTTAAG 443 consensus_9105#1 GGAGTGTAAGCTCAGCATATTTATAGGATTTACTCGAGATGTACAAATAACTTCTTTAAG 200 *************************** consensus_9105#0 ATGAATGTTCATCCAGTCATCGCCAGGCGACAAGGTGGCCGTTATAAGTTCTCACCACTT 503 consensus_9105#1 ATGAATGTTCATCCAGTCATCGC-AAGCGACAAGGTGGCCGTTATAAGTT-TCACCACTT 258 *********************** * ************************ ********* consensus_9105#0 TTCAATTCACCGAGAATATGAAAATCCGTTGCACCCTTGAGGGATG-------------- 549 consensus_9105#1 TTCAATTCAACGAGCATAGGAAGATTCGTTGCAGCCTTGAGGAGTGTCACAGGTAACATT 318 ********* **** *** *** ** ******* ******** ** consensus_9105#0 ---------------------------- consensus_9105#1 GAGGAATGCAATTAGGCGCCTAATATTT 346 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||