cluster # 9106

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Schistosoma mansoni
cluster # 9106 cluster # 9106 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9106#0 length = 371 sequences # 7

consensus_9106#1 length = 185 sequences # 1

consensusID : consensus_9106#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 371
fasta sequence

                              [CGGGAGCAAAGTGTTTGGTAGTCTTCAGCCTACTACAACTTCTTGTGGCATTTTCACACTGTGATATTAATGACATAACATGCAACAAGACAGTTT-GTTGCGCATCAGAAGACGGTAAAAAAGGTTCCCTATGTTGTGAGAAAGATGGTTGTCCAATTCCAAGCACTCCAGATCTTTTGCTTGGAAATTACCAGCGCCATCAACGAATGAAAAATTATTTAGAGGAAGTGTGCAAAAATTACATATAAACA-CCATAAAGTGCCGGAAAATTGGTTGTTCATGATTAATTACGTTTAAAAATATGCTAAACTGACCGACCGTGAATTTATGTATTTGATTTATTTGTACAACTTAAATAATAAAAGACGCTC]

[+] EMBL AF527012             [CGGGAGCAAAGTGTTTGGTAGTCTTCAGCCTACTACAACTTCTTGTGGCATTTTCACACTGTGATATTAATGACATAACATGCAACAAGACAGTTT GTTGCGCATCAGAAGACGGTAAAANAGGTTCCCTATGTTGTGAGAAAGATGGTTGTCCAATTCCAAGCACTCCAGATCTTTTGCTTGGAAATTACCAGCGCCATCAACGAATGAAAAATTATTTAGAGGAAGTGTGCAAAAATTACATATAAACA CCATAAAATACCGGAAAATTGGTTGTTCATGATTAATTACGTTTAAAAATATGCTAAACTGACCGACCGTGAATTTATGTATTTGATTTATTTGTACAACTTAAATAATAAAAGACGCTC]
[+] EMBL AW061382             [       AAACTGTNNGGTAGTCTTCAGCCTACTACAACTTCTTGTGGCATTTTCACACTGTGATATTAATGACATAACATGCAACAAGACAGTTT GTTGCGCATCAGAAGACGGTAAAAAAGGTTCCCTATGTTGTGAGAAAGATGGTTGTCCAATTCCAAGCACTCCAGATCTTTTGCTTGGAAATTACCAGCGCCATCAACGAATG AAAATTATTTAGAGG AGTGTGCGAAAATTTCATATACACG CCATAAAATACCGGAAAATTGGTTGTTCAAGATTAATTACGTT                                                                             ]
[+] EMBL AI764941             [                                                                                   AACAAGACAGTTTCGTTGCGCATCAGAAGACGGTAAAAAAGGTTCCCTATGTTGTGAGAAAGATGGTTGTCCAATTCCAAGCACTCCAGATCTTTTGCTTGGAAATTACCAGCGCCATCAACGAATGAAAAATTATTTAGAGGAAGTGTGCGAAAATTTCATATACACG CCATAAAATACCGGAAAATTGGTTGTTCATGATTAATTACGTTTAAAAATATGCTAAACTGACCGACCGTTGATTTATGTATTTGATTTATTTGTACAACTTAAATAATAAAAGACGtt ]
[+] EMBL AI764950             [                                                                                                                                                           ttgTCCAAGCACTCCAGATCTTTTTCTTGAAAATTACCGGCGCCATCGACGAATGAAAAATTATTTAGAGGAAGTGTGCAAATATTACATATAAATA TCATAAAGTGCCGGAAAATTGGTTGTTCATGATTGATTACGTTT AAAATATGCTAAACTGACCGACCGTGAA TTATGTATTTGATTTATTTGTACAACTTAAATAATAAAAGACGCcc]
[+] EMBL AW497753             [                                                                                                                                                                     tCTCGAGTTTTTTT  TTGAAAATTACCGGCGCCATCGACGAATGAAAAATTATTTAGAGGAAGTGTGCAAATATTACATATAAATA TCATAAAGTGCCGGAAAATTGGTTGTTCATGATTGATTACGTTTAAAAATATGCTAAACTGACCGACCGTGAATTTATGTATTTGATTTATTTGTACAACTTAAATAATAAAAGACGCT ]
[-] EMBL AI740406             [                                                                                                                                                                                                                    AATTTATTTAGGGGAAGTGTGCAAATATTACATATAAATATCCATAAAGTGCCGGAAAATTGGTTGTTCATGATTCATTACGTTTAAAAATATGCTAAACTGACCGACCGTGAATTTATGTATTTGATTTATTTGTACAACTTAAATAATAAAAGACGCTC]
[-] EMBL AI026177             [                                                                                                                                                                                                                                                              CATAAAGTGCCGGAAAATTGGTTGTTCATGATTTATTACGTTTAAAAATATGCTAAACTGACCGACCGTGAATTTATGTATTTGATTTATTTGTACAACTTAAATAATAAAAGACGCTC]




>consensus_9106#0
CGGGAGCAAAGTGTTTGGTAGTCTTCAGCCTACTACAACTTCTTGTGGCATTTTCACACT
GTGATATTAATGACATAACATGCAACAAGACAGTTTGTTGCGCATCAGAAGACGGTAAAA
AAGGTTCCCTATGTTGTGAGAAAGATGGTTGTCCAATTCCAAGCACTCCAGATCTTTTGC
TTGGAAATTACCAGCGCCATCAACGAATGAAAAATTATTTAGAGGAAGTGTGCAAAAATT
ACATATAAACACCATAAAGTGCCGGAAAATTGGTTGTTCATGATTAATTACGTTTAAAAA
TATGCTAAACTGACCGACCGTGAATTTATGTATTTGATTTATTTGTACAACTTAAATAAT
AAAAGACGCTC

consensusID : consensus_9106#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 185
fasta sequence

                              [TGACATAACATGCAACAAGACAGTTTGTTGCGCATCAGAAGACGGTAAAAAAGGTTCCCTATGGTTGTAAGAAAGATGGTTGTTTCAATTCCTAGGCACCTCCAGATCTTTTGCTTGGAAATTACCAGCGCCATCAACGAATGGAAAATTATTAAGAGGAAGTTGTGGGGAATTTTCATTTACCC]

[+] EMBL AW330537             [TGACATAACATGCAACAAGACAGTTTGTTGCGCATCAGAAGACGGTAAAAAAGGTTCCCTATGGTTGTAAGAAAGATGGTTGTTTCAATTCCTAGGCACCTCCAGATCTTTTGCTTGGAAATTACCAGCGCCATCAACGAATGGAAAATTATTAAGAGGAAGTTGTGGGGAATTTTCATTTACCC]




>consensus_9106#1
TGACATAACATGCAACAAGACAGTTTGTTGCGCATCAGAAGACGGTAAAAAAGGTTCCCT
ATGGTTGTAAGAAAGATGGTTGTTTCAATTCCTAGGCACCTCCAGATCTTTTGCTTGGAA
ATTACCAGCGCCATCAACGAATGGAAAATTATTAAGAGGAAGTTGTGGGGAATTTTCATT
TACCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9106#0      CGGGAGCAAAGTGTTTGGTAGTCTTCAGCCTACTACAACTTCTTGTGGCATTTTCACACT 60
consensus_9106#1      ------------------------------------------------------------
                                                                                  

consensus_9106#0      GTGATATTAATGACATAACATGCAACAAGACAGTTTGTTGCGCATCAGAAGACGGTAAAA 120
consensus_9106#1      ----------TGACATAACATGCAACAAGACAGTTTGTTGCGCATCAGAAGACGGTAAAA 50
                                **************************************************

consensus_9106#0      AAGGTTCCCTATG-TTGTGAGAAAGATGGTTGTC-CAATTCC-AAGCAC-TCCAGATCTT 176
consensus_9106#1      AAGGTTCCCTATGGTTGTAAGAAAGATGGTTGTTTCAATTCCTAGGCACCTCCAGATCTT 110
                      ************* **** **************  ******* * **** **********

consensus_9106#0      TTGCTTGGAAATTACCAGCGCCATCAACGAATGAAAAATTATTTAGAGGAAGT-GTGCAA 235
consensus_9106#1      TTGCTTGGAAATTACCAGCGCCATCAACGAATGGAAAATTATTAAGAGGAAGTTGTGGGG 170
                      ********************************* ********* ********* ***   

consensus_9106#0      AAATTACATATAAACACCATAAAGTGCCGGAAAATTGGTTGTTCATGATTAATTACGTTT 295
consensus_9106#1      AATTTTCATTTACCC--------------------------------------------- 185
                      ** ** *** **  *                                             

consensus_9106#0      AAAAATATGCTAAACTGACCGACCGTGAATTTATGTATTTGATTTATTTGTACAACTTAA 355
consensus_9106#1      ------------------------------------------------------------
                                                                                  

consensus_9106#0      ATAATAAAAGACGCTC 371
consensus_9106#1      ----------------