These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9106#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 371 fasta sequence [CGGGAGCAAAGTGTTTGGTAGTCTTCAGCCTACTACAACTTCTTGTGGCATTTTCACACTGTGATATTAATGACATAACATGCAACAAGACAGTTT-GTTGCGCATCAGAAGACGGTAAAAAAGGTTCCCTATGTTGTGAGAAAGATGGTTGTCCAATTCCAAGCACTCCAGATCTTTTGCTTGGAAATTACCAGCGCCATCAACGAATGAAAAATTATTTAGAGGAAGTGTGCAAAAATTACATATAAACA-CCATAAAGTGCCGGAAAATTGGTTGTTCATGATTAATTACGTTTAAAAATATGCTAAACTGACCGACCGTGAATTTATGTATTTGATTTATTTGTACAACTTAAATAATAAAAGACGCTC] [+] EMBL AF527012 [CGGGAGCAAAGTGTTTGGTAGTCTTCAGCCTACTACAACTTCTTGTGGCATTTTCACACTGTGATATTAATGACATAACATGCAACAAGACAGTTT GTTGCGCATCAGAAGACGGTAAAANAGGTTCCCTATGTTGTGAGAAAGATGGTTGTCCAATTCCAAGCACTCCAGATCTTTTGCTTGGAAATTACCAGCGCCATCAACGAATGAAAAATTATTTAGAGGAAGTGTGCAAAAATTACATATAAACA CCATAAAATACCGGAAAATTGGTTGTTCATGATTAATTACGTTTAAAAATATGCTAAACTGACCGACCGTGAATTTATGTATTTGATTTATTTGTACAACTTAAATAATAAAAGACGCTC] [+] EMBL AW061382 [ AAACTGTNNGGTAGTCTTCAGCCTACTACAACTTCTTGTGGCATTTTCACACTGTGATATTAATGACATAACATGCAACAAGACAGTTT GTTGCGCATCAGAAGACGGTAAAAAAGGTTCCCTATGTTGTGAGAAAGATGGTTGTCCAATTCCAAGCACTCCAGATCTTTTGCTTGGAAATTACCAGCGCCATCAACGAATG AAAATTATTTAGAGG AGTGTGCGAAAATTTCATATACACG CCATAAAATACCGGAAAATTGGTTGTTCAAGATTAATTACGTT ] [+] EMBL AI764941 [ AACAAGACAGTTTCGTTGCGCATCAGAAGACGGTAAAAAAGGTTCCCTATGTTGTGAGAAAGATGGTTGTCCAATTCCAAGCACTCCAGATCTTTTGCTTGGAAATTACCAGCGCCATCAACGAATGAAAAATTATTTAGAGGAAGTGTGCGAAAATTTCATATACACG CCATAAAATACCGGAAAATTGGTTGTTCATGATTAATTACGTTTAAAAATATGCTAAACTGACCGACCGTTGATTTATGTATTTGATTTATTTGTACAACTTAAATAATAAAAGACGtt ] [+] EMBL AI764950 [ ttgTCCAAGCACTCCAGATCTTTTTCTTGAAAATTACCGGCGCCATCGACGAATGAAAAATTATTTAGAGGAAGTGTGCAAATATTACATATAAATA TCATAAAGTGCCGGAAAATTGGTTGTTCATGATTGATTACGTTT AAAATATGCTAAACTGACCGACCGTGAA TTATGTATTTGATTTATTTGTACAACTTAAATAATAAAAGACGCcc] [+] EMBL AW497753 [ tCTCGAGTTTTTTT TTGAAAATTACCGGCGCCATCGACGAATGAAAAATTATTTAGAGGAAGTGTGCAAATATTACATATAAATA TCATAAAGTGCCGGAAAATTGGTTGTTCATGATTGATTACGTTTAAAAATATGCTAAACTGACCGACCGTGAATTTATGTATTTGATTTATTTGTACAACTTAAATAATAAAAGACGCT ] [-] EMBL AI740406 [ AATTTATTTAGGGGAAGTGTGCAAATATTACATATAAATATCCATAAAGTGCCGGAAAATTGGTTGTTCATGATTCATTACGTTTAAAAATATGCTAAACTGACCGACCGTGAATTTATGTATTTGATTTATTTGTACAACTTAAATAATAAAAGACGCTC] [-] EMBL AI026177 [ CATAAAGTGCCGGAAAATTGGTTGTTCATGATTTATTACGTTTAAAAATATGCTAAACTGACCGACCGTGAATTTATGTATTTGATTTATTTGTACAACTTAAATAATAAAAGACGCTC] consensusID : consensus_9106#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 185 fasta sequence [TGACATAACATGCAACAAGACAGTTTGTTGCGCATCAGAAGACGGTAAAAAAGGTTCCCTATGGTTGTAAGAAAGATGGTTGTTTCAATTCCTAGGCACCTCCAGATCTTTTGCTTGGAAATTACCAGCGCCATCAACGAATGGAAAATTATTAAGAGGAAGTTGTGGGGAATTTTCATTTACCC] [+] EMBL AW330537 [TGACATAACATGCAACAAGACAGTTTGTTGCGCATCAGAAGACGGTAAAAAAGGTTCCCTATGGTTGTAAGAAAGATGGTTGTTTCAATTCCTAGGCACCTCCAGATCTTTTGCTTGGAAATTACCAGCGCCATCAACGAATGGAAAATTATTAAGAGGAAGTTGTGGGGAATTTTCATTTACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9106#0 CGGGAGCAAAGTGTTTGGTAGTCTTCAGCCTACTACAACTTCTTGTGGCATTTTCACACT 60 consensus_9106#1 ------------------------------------------------------------ consensus_9106#0 GTGATATTAATGACATAACATGCAACAAGACAGTTTGTTGCGCATCAGAAGACGGTAAAA 120 consensus_9106#1 ----------TGACATAACATGCAACAAGACAGTTTGTTGCGCATCAGAAGACGGTAAAA 50 ************************************************** consensus_9106#0 AAGGTTCCCTATG-TTGTGAGAAAGATGGTTGTC-CAATTCC-AAGCAC-TCCAGATCTT 176 consensus_9106#1 AAGGTTCCCTATGGTTGTAAGAAAGATGGTTGTTTCAATTCCTAGGCACCTCCAGATCTT 110 ************* **** ************** ******* * **** ********** consensus_9106#0 TTGCTTGGAAATTACCAGCGCCATCAACGAATGAAAAATTATTTAGAGGAAGT-GTGCAA 235 consensus_9106#1 TTGCTTGGAAATTACCAGCGCCATCAACGAATGGAAAATTATTAAGAGGAAGTTGTGGGG 170 ********************************* ********* ********* *** consensus_9106#0 AAATTACATATAAACACCATAAAGTGCCGGAAAATTGGTTGTTCATGATTAATTACGTTT 295 consensus_9106#1 AATTTTCATTTACCC--------------------------------------------- 185 ** ** *** ** * consensus_9106#0 AAAAATATGCTAAACTGACCGACCGTGAATTTATGTATTTGATTTATTTGTACAACTTAA 355 consensus_9106#1 ------------------------------------------------------------ consensus_9106#0 ATAATAAAAGACGCTC 371 consensus_9106#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||