These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 404 fasta sequence [GCGGTGTACGACCAAGGGATCGCGCGGGCTGCAGGAAGTACGAGTTAAATGTGGTAATGGGACGGATGCAGGGTCCTGATCTTGGGAAAATCAAACCAAGACATTACC-GACAGACTTCAGAT-GTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCAGATGTCGCTAATACACATTACGGAACTACCGTTGCAGCGTTCAGTTTATCTATTCTTATTATGAGC] [+] EMBL BG930658 [GCGGTGTACGACCAAGGGATCGCGCGGGCTGCAGGAAGTACGAGTTAAATGTGGTAATGGGACGGATGCAGGGGCCTGAGCTTGGGAAAATCAGACCAAGACATTACC GACAGACTTCAGAT GTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGACGATGGTGTTTGTGATGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCAGATGTCGCTAATACACATTACGGAACTACCGTTGCAGCGTTCAGTTTATCTATTCTTATTATGA ] [+] EMBL BG930537 [ GTCCTGATCTTGGGAAAATCAAACCAAGACATTACC GACAGACTTCAGAT GTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCAGATGTCGCTAATACACATTACGGAACTACCGTTGCAGCGTTCAGTTTATCTATTCTTATTATGA ] [-] EMBL BG930523 [ TCCTGATCTTGGGAAAATCAAACCAAGACATTCCC GACAGACTTCAGAT GTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCAGATGTCGCTAATACACATTACGGAACTACCGTTGCAGCGTTCAGTTTATCTATTCTTATTATGAGC] [-] EMBL BG930479 [ CAAACCAAGACATTCCCGGACAGCCTTCA ATGGTAACAATACCAATCCATCCAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCAGATGTCGCTAATACACATTACGGAACTACCGTTGCAGCGTTCAGTTTATCTATTCTTATTATGAG ] consensusID : consensus_9107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 326 fasta sequence [TATGTTACGATGATTAAATCGGAAGTCAGTTGCGATGCTTCTGCGGCTCCTGATCTTGGGAAAATCAAACCAAGACATTACCGACAGACTTCAGATGTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCCGATGTCGCTAATAC] [+] EMBL CD098027 [TATGTTACGATGATTAAATCGGAAGTCAGTTGCGATGCTTCTGCGGCTCCTGATCTTGGGAAAATCAAACCAAGACATTACCGACAGACTTCAGATGTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCCGATGTCGCTAATAC] [-] EMBL CD097642 [ ATGTTACGATGATTAAATCGGAAGTCAGTTGCGATGCTTCTGCGGCTCCTGATCTTGGGAAAATCAAACCAAGACATTACCGACAGACTTCAGATGTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCT ] [-] EMBL CD192057 [ CATTACCGACAGACTTCAGATGTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATAC ] [-] EMBL CD192592 [ ATGTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9107#0 GCGGTGTACGACCAAGGGATCGCGCGGGCTGCAGGAAGTACGAGTTAAATGTGGTAATGG 60 consensus_9107#1 ------------------------TATGTTACGATGATTA-AATCGGAAGTCAGTTGCGA 35 * * * * ** * ** ** * consensus_9107#0 GACGGATGCAGGGTCCTGATCTTGGGAAAATCAAACCAAGACATTACCGACAGACTTCAG 120 consensus_9107#1 TGCTTCTGC-GGCTCCTGATCTTGGGAAAATCAAACCAAGACATTACCGACAGACTTCAG 94 * *** ** *********************************************** consensus_9107#0 ATGTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGC 180 consensus_9107#1 ATGTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGC 154 ************************************************************ consensus_9107#0 CGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGA 240 consensus_9107#1 CGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGA 214 ************************************************************ consensus_9107#0 TGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTAC 300 consensus_9107#1 TGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTAC 274 ************************************************************ consensus_9107#0 CTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCAGATGTCGCTAATACACATTACG 360 consensus_9107#1 CTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCCGATGTCGCTAATAC-------- 326 ************************************* ************** consensus_9107#0 GAACTACCGTTGCAGCGTTCAGTTTATCTATTCTTATTATGAGC 404 consensus_9107#1 -------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||