cluster # 9107

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Schistosoma mansoni
cluster # 9107 cluster # 9107 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9107#0 length = 404 sequences # 4

consensus_9107#1 length = 326 sequences # 4

consensusID : consensus_9107#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 404
fasta sequence

                              [GCGGTGTACGACCAAGGGATCGCGCGGGCTGCAGGAAGTACGAGTTAAATGTGGTAATGGGACGGATGCAGGGTCCTGATCTTGGGAAAATCAAACCAAGACATTACC-GACAGACTTCAGAT-GTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCAGATGTCGCTAATACACATTACGGAACTACCGTTGCAGCGTTCAGTTTATCTATTCTTATTATGAGC]

[+] EMBL BG930658             [GCGGTGTACGACCAAGGGATCGCGCGGGCTGCAGGAAGTACGAGTTAAATGTGGTAATGGGACGGATGCAGGGGCCTGAGCTTGGGAAAATCAGACCAAGACATTACC GACAGACTTCAGAT GTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGACGATGGTGTTTGTGATGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCAGATGTCGCTAATACACATTACGGAACTACCGTTGCAGCGTTCAGTTTATCTATTCTTATTATGA  ]
[+] EMBL BG930537             [                                                                        GTCCTGATCTTGGGAAAATCAAACCAAGACATTACC GACAGACTTCAGAT GTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCAGATGTCGCTAATACACATTACGGAACTACCGTTGCAGCGTTCAGTTTATCTATTCTTATTATGA  ]
[-] EMBL BG930523             [                                                                         TCCTGATCTTGGGAAAATCAAACCAAGACATTCCC GACAGACTTCAGAT GTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCAGATGTCGCTAATACACATTACGGAACTACCGTTGCAGCGTTCAGTTTATCTATTCTTATTATGAGC]
[-] EMBL BG930479             [                                                                                           CAAACCAAGACATTCCCGGACAGCCTTCA ATGGTAACAATACCAATCCATCCAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCAGATGTCGCTAATACACATTACGGAACTACCGTTGCAGCGTTCAGTTTATCTATTCTTATTATGAG ]




>consensus_9107#0
GCGGTGTACGACCAAGGGATCGCGCGGGCTGCAGGAAGTACGAGTTAAATGTGGTAATGG
GACGGATGCAGGGTCCTGATCTTGGGAAAATCAAACCAAGACATTACCGACAGACTTCAG
ATGTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGC
CGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGA
TGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTAC
CTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCAGATGTCGCTAATACACATTACG
GAACTACCGTTGCAGCGTTCAGTTTATCTATTCTTATTATGAGC

consensusID : consensus_9107#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 326
fasta sequence

                              [TATGTTACGATGATTAAATCGGAAGTCAGTTGCGATGCTTCTGCGGCTCCTGATCTTGGGAAAATCAAACCAAGACATTACCGACAGACTTCAGATGTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCCGATGTCGCTAATAC]

[+] EMBL CD098027             [TATGTTACGATGATTAAATCGGAAGTCAGTTGCGATGCTTCTGCGGCTCCTGATCTTGGGAAAATCAAACCAAGACATTACCGACAGACTTCAGATGTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCCGATGTCGCTAATAC]
[-] EMBL CD097642             [ ATGTTACGATGATTAAATCGGAAGTCAGTTGCGATGCTTCTGCGGCTCCTGATCTTGGGAAAATCAAACCAAGACATTACCGACAGACTTCAGATGTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCT                                 ]
[-] EMBL CD192057             [                                                                           CATTACCGACAGACTTCAGATGTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATAC                       ]
[-] EMBL CD192592             [                                                                                              ATGTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAATAC                       ]




>consensus_9107#1
TATGTTACGATGATTAAATCGGAAGTCAGTTGCGATGCTTCTGCGGCTCCTGATCTTGGG
AAAATCAAACCAAGACATTACCGACAGACTTCAGATGTAACAATACCAATCCATACAGAT
AGCACATATTCGACTACCAGCAAATCTACCATGCCGTTTTGTCGCCGATGGTGTTTGTGT
TGCAGGCAAACAATGTGGTCAAATAAATTTTGGATGGTATTCACGGCATCCACTTGGGGT
TTCTTATCTAATGTTGAACGTGCTGTGATATTACCTACGCTCTGGCTATATCTTAAAGAA
TACTGGGGAGCCGATGTCGCTAATAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9107#0      GCGGTGTACGACCAAGGGATCGCGCGGGCTGCAGGAAGTACGAGTTAAATGTGGTAATGG 60
consensus_9107#1      ------------------------TATGTTACGATGATTA-AATCGGAAGTCAGTTGCGA 35
                                                 * * *    * **  *    **    **   * 

consensus_9107#0      GACGGATGCAGGGTCCTGATCTTGGGAAAATCAAACCAAGACATTACCGACAGACTTCAG 120
consensus_9107#1      TGCTTCTGC-GGCTCCTGATCTTGGGAAAATCAAACCAAGACATTACCGACAGACTTCAG 94
                        *   *** ** ***********************************************

consensus_9107#0      ATGTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGC 180
consensus_9107#1      ATGTAACAATACCAATCCATACAGATAGCACATATTCGACTACCAGCAAATCTACCATGC 154
                      ************************************************************

consensus_9107#0      CGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGA 240
consensus_9107#1      CGTTTTGTCGCCGATGGTGTTTGTGTTGCAGGCAAACAATGTGGTCAAATAAATTTTGGA 214
                      ************************************************************

consensus_9107#0      TGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTAC 300
consensus_9107#1      TGGTATTCACGGCATCCACTTGGGGTTTCTTATCTAATGTTGAACGTGCTGTGATATTAC 274
                      ************************************************************

consensus_9107#0      CTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCAGATGTCGCTAATACACATTACG 360
consensus_9107#1      CTACGCTCTGGCTATATCTTAAAGAATACTGGGGAGCCGATGTCGCTAATAC-------- 326
                      ************************************* **************        

consensus_9107#0      GAACTACCGTTGCAGCGTTCAGTTTATCTATTCTTATTATGAGC 404
consensus_9107#1      --------------------------------------------