These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9108#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 873 fasta sequence [GAGGCGATCATTGTGAATCACCTACAAGTCGGATTGTAACTATATCAGATTTAGCATTTTTCATTACATTATGCAGTTTAGCTACATTTGAACGTACTGAATTAGCAACCTTAGTTCTTGGGAATGCATCGTTGAGGTTACTTTTGGAAGCAGAACCTGCTTGTCGTGACATATTACAGTCGTTCCATCAAGCAGATTACGCGTCTTGTTTGGGGCGATTAAATAAACTACGAAATGTTTTACGGTTAGATATATTTTTGTCTGATCATGTATCTGCATTATTCCGAGAGATTCGATCACGTGCACTTTGTCAGTATTTCAGTCCATATTCATCAGCCGACTTAAATTTGATGGCTAAAGCATTCGATACAAATGTAGCTAGTCTAGAAAATGAATTAGCAGTACTTATTCAAGATGGAAGTATTAAAGCTCGTATTGATTCACATAAACAGCTTCTTCGTGTTCTTGACGTGGATCAGCGATGTCTAACGTTTGCTCGGGCTGTACGACTTGTTGATGAGTATAAAAATCGTACACATTCACTGATACTTCGAATGGCATTAGCACGTCAAAAACTTACTGTTAAGTCTACCAGAGATGATATTGATCCTATGTATCATTACATGTCATAAAACAATCAATCTTTGGATTAATAATAACAATGCTTATAAAATAGTCATAGTAGTATGGCATTATGGAGCTATTCAAATTTCTGTGATGGGACAAAACTCTGAGAACTTTGAATTAATGAAAGAGAACACACACCGACCTGCTTTTACAACAGATTTACAATATCCTCCATATTTGATTAGGACTGTAGAAATGCTGTCCTGTTTTTCTCACATAGAACTGTTTATTTACACCTAAACACAA] [+] EMBL CD083288 [GAGGCGATCATTGTGAATCACCTACAAGTCGGATTGTAACTATATCAGATTTAGCATTTTTCATTACATTATGCAGTTTAGCTACATTTGAACGTACTGAATTAGCAACCTTAGTTCTTGGGAATGCATCGTTGAGGTTACTTTTGGAAGCAGAACCTGCTTGTCGTGACATATTACAGTCGTTCCATCAAGCAGATTACGCGTCTTGTTTGGGGCGATTAAATAAACTACGAAATGTTTTACGGTTAGATATATTTTTGTCTGATCATGTATCTGCATTATTCCGAGAGATTCGATCACGTGCACTTTGTCAGTATTTCAGTCCATATTCATCAGCCGACTTAAATTTGATGGCTAAAGCATTCGATACAAATGTAGCTAGTCTAGAAAATGAATTAGCAGTACTTATTCAAGATGGAAGTATTAAAGCTCGTATTGATTCACATAAACAGCTTCTTCGTGTTCTTGACGTGGATCAGCGATGTCTAACGTTTGCTCGGGCTGTACGACTTGTTGATGAGTATAAAAATCGTACACATTCACTGATACTTCGAATGGCATTAGCACGTCAAAAACTTACTGTTAAGTCTACCAGAGATGATATTGATCCTATGTATCATTACATGTCATAAAACAATCA ] [+] EMBL CD089959 [ GAATCACCTACAAGTCGGATTGTAACTATATCAGATTTAGCATTTTTCATTACATTATGCAGTTTAGCTACATTTGAACGTACTGAATTAGCAACCTTAGTTCTTGGGAATGCATCGTTGAGGTTACTTTTGGAAGCAGAACCTGCTTGTCGTGACATATTACAGTCGTTCCATCAAGCAGATTACGCGTCTTGTTTGGGGCGATTAAATAAACTACGAAATGTTTTACGGTTAGATATATTTTTGTCTGATCATGTATCTGCATTATTCCGAGAGATTCGATCACGTGCACTTTGTCAGTATTTCAGTCCATATTCATCAGCCGACTTAAATTTGATGGCTAAAGCATTCGATACAAATGTAGCTAGTCTAGAAAATGA ] [+] EMBL CD193923 [ GATTACGCGTCTTGTTTGGGGCGATTAAATAAACTACGAAATGTTTTACGGTTAGATATATTTTTGTCTGATCATGTATCTGCATTATTCCGAGAGATTCGATCACGTGCACTTTGTCAGTATTTCAGTCCATATTCATCAGCCGACTTAAATTTGATGGCTAAAGCATTCGATACAAATGTAGCTAGTCTAGAAAATGAATTAGCAGTACTTATTCAAGATGGAAGTATTAAAGCTCGTATTGATTCACATAA ] [+] EMBL CD141496 [ GTGCACTTTGTCAGTATTTCAGTCCATATTCATCAGCCGACTTAAATTTGATGGCTAAAGCATTCGATACAAATGTAGCTAGTCTAGAAAATGAATTAGCAGTACTTATTCAAGATGGAAGTATTAAAGCTCGTATTGATTCACATATACAGCTTCTTCGTGTTCTTGACGTGGATCAGCGATGTCTAACGTTTGCTCGGGCTGTACGACTTGTTGATGAGTATAANAATCGTACACATTCACTGATACTTCGAATGGCATTAGCACGTCANAAACTTACTGTTAAGTCTACCAGAGATGATATTGATCCTATGTATCATTACATGTCATAAAACAtc ] [+] EMBL CD083404 [ ATGGCTAAAGCATTCGAT C AATGTAGCTAGTCTAGAAAATGAATTAGCAGTACTTATTCAAGATGGAAGTATTAAAGCTCGTATTGATTCACATAAACAGCTTCTTCGTGTTCTTGACGTGGATCAGCGATGTCTAACGTTTGCTCGGGCTGTACGACTTGTTGATGAGTATAAAAATCGTACACATTCACTGATACTTCGAATGGCATTAGCACGTCAAAAACTTACTGTTAAGTCTACCAGAGATGATATTGATCCTATGTATCATTACATGTCATAAAACAATCAATCTTTGGATTAATAATAACAATGCTTATAAAATAGTCATAGTAGTATGGCATTATGGAGCTATTCAAATTTCTGTGATGGGACAAAACTCTGAGAACTTTGAATTAATGAAAGAGAACACACACCGACCTGCTTTTACAACAGATTTACAATATCCTCCATATTTGATTAGGACTGTAGAAATGCTGTCCTGTTTTTCTCACATAGAACTGTTTATTTACACCTAAACACAA] consensusID : consensus_9108#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [CTCGCGGCCAGAAATTCGGCACGAGGTTAGCACGTCAAAAACTTACTGTTAAGTCTACCAGAGATGATATTGATCCTATGTATCATTACATGTCATAAAACAATCAATCTTTGGATTAATAATAACAATGCTTATAAAATAGTCATAGTAGTATGGCATTATGGAGCTATTCAAATTTCTGTGATGGGACAAAACTCTGAGAACTTTGAATTAATGAAAGAGAACACACACCGACCTGCTTTTACAACAGATTTACAATATCCTCCATATTTGATTAGGACTGTAGAAATGCTGTCCTGTTTTTCTCACATAGAACTGTTAATNTACACCTAAACACANATGTNTACTGCTTCTACCATAAAGTCGTCCTCGNTACTTCGATGACACATGGCTAATTCATTTGTACTTNATTTTCACATTGATATTTTTAAAGCTGTCACTTACCCCTCTCGCACAATCTGTGGTCCCAGTTCACGTCACAACTATAATGACCCACTCTGCACCAGTCGAATCTATCTATTAAGCTATACGNTAGGTATTGCGAATCATTAGGTATA] [+] EMBL CD077764 [CTCGCGGCCAGAAATTCGGCACGAGGTTAGCACGTCAAAAACTTACTGTTAAGTCTACCAGAGATGATATTGATCCTATGTATCATTACATGTCATAAAACAATCAATCTTTGGATTAATAATAACAATGCTTATAAAATAGTCATAGTAGTATGGCATTATGGAGCTATTCAAATTTCTGTGATGGGACAAAACTCTGAGAACTTTGAATTAATGAAAGAGAACACACACCGACCTGCTTTTACAACAGATTTACAATATCCTCCATATTTGATTAGGACTGTAGAAATGCTGTCCTGTTTTTCTCACATAGAACTGTTAATNTACACCTAAACACANATGTNTACTGCTTCTACCATAAAGTCGTCCTCGNTACTTCGATGACACATGGCTAATTCATTTGTACTTNATTTTCACATTGATATTTTTAAAGCTGTCACTTACCCCTCTCGCACAATCTGTGGTCCCAGTTCACGTCACAACTATAATGACCCACTCTGCACCAGTCGAATCTATCTATTAAGCTATACGNTAGGTATTGCGAATCATTAGGTATA] consensusID : consensus_9108#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 327 fasta sequence [ATAAACAGCTTCTTCGTGTTCTTGACGTGGATCAGCGATGTCTAACGTTTGCTCGGGCTGTACGACTTGTTGATGAGTATAAAAATCGTACACATTCACTGATACTTCGAATGGCATTAGCACGTCAAAAACTTACTGTTAAGCTGTCAACTTACCCCCTCTCGCCACAATCCTGTTGGTCCCCAGTTTTCACGTTCACAAACTATCACATGTACACAACTCCTGCACACCAAGTCGGAATACTATCCTTATTTAAAAGCTTATAATCGGTATAGTGTTATTGGTCGATATTTCATTTTAGGTTTTATTATTGTATAAAATGTTGGT] [-] EMBL AI068107 [ATAAACAGCTTCTTCGTGTTCTTGACGTGGATCAGCGATGTCTAACGTTTGCTCGGGCTGTACGACTTGTTGATGAGTATAAAAATCGTACACATTCACTGATACTTCGAATGGCATTAGCACGTCAAAAACTTACTGTTAAGCTGTCAACTTACCCCCTCTCGCCACAATCCTGTTGGTCCCCAGTTTTCACGTTCACAAACTATCACATGTACACAACTCCTGCACACCAAGTCGGAATACTATCCTTATTTAAAAGCTTATAATCGGTATAGTGTTATTGGTCGATATTTCATTTTAGGTTTTATTATTGTATAAAATGTTGGT] [-] EMBL CD076859 [ CTGTCAACTTACCCCCTCTCGCCACAATCCTGTTGGTCCCCAGTTTTCACGTTCACAAACTATCACATGTACACAACTCCTGCACACCAAGTCGGAATACTATCCTTATTTAAAAGCTTATAATCGGTATAGTGTTATTGGTCGATATTTCATTTTAGGTTTTATTATTGTATAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9108#0 GAGGCGATCATTGTGAATCACCTACAAGTCGGATTGTAACTATATCAGATTTAGCATTTT 60 consensus_9108#1 ------------------------------------------------------------ consensus_9108#2 ------------------------------------------------------------ consensus_9108#0 TCATTACATTATGCAGTTTAGCTACATTTGAACGTACTGAATTAGCAACCTTAGTTCTTG 120 consensus_9108#1 ------------------------------------------------------------ consensus_9108#2 ------------------------------------------------------------ consensus_9108#0 GGAATGCATCGTTGAGGTTACTTTTGGAAGCAGAACCTGCTTGTCGTGACATATTACAGT 180 consensus_9108#1 ------------------------------------------------------------ consensus_9108#2 ------------------------------------------------------------ consensus_9108#0 CGTTCCATCAAGCAGATTACGCGTCTTGTTTGGGGCGATTAAATAAACTACGAAATGTTT 240 consensus_9108#1 ------------------------------------------------------------ consensus_9108#2 ------------------------------------------------------------ consensus_9108#0 TACGGTTAGATATATTTTTGTCTGATCATGTATCTGCATTATTCCGAGAGATTCGATCAC 300 consensus_9108#1 ------------------------------------------------------------ consensus_9108#2 ------------------------------------------------------------ consensus_9108#0 GTGCACTTTGTCAGTATTTCAGTCCATATTCATCAGCCGACTTAAATTTGATGGCTAAAG 360 consensus_9108#1 ------------------------------------------------------------ consensus_9108#2 ------------------------------------------------------------ consensus_9108#0 CATTCGATACAAATGTAGCTAGTCTAGAAAATGAATTAGCAGTACTTATTCAAGATGGAA 420 consensus_9108#1 ------------------------------------------------------------ consensus_9108#2 ------------------------------------------------------------ consensus_9108#0 GTATTAAAGCTCGTATTGATTCACATAAACAGCTTCTTCGTGTTCTTGACGTGGATCAGC 480 consensus_9108#1 ------------------------------------------------------------ consensus_9108#2 ------------------------------------------------------------ consensus_9108#0 GATGTCTAACGTTTGCTCGGGCTGTACGACTTGTTGATGAGTATAAAAATCGTACACATT 540 consensus_9108#1 ------------------------------------------------------CTCGCG 6 consensus_9108#2 ------------------------------------------------------------ consensus_9108#0 CACTGATACTTCGAATGGCATTAGCACGTCAAAAACTTACTGTTAAGTCTACCAGAGATG 600 consensus_9108#1 GCCAGAAATTCGGCACGAGGTTAGCACGTCAAAAACTTACTGTTAAGTCTACCAGAGATG 66 consensus_9108#2 ---------------ATAAACAGCTTCTTCGTGTTCTTGACGT-GGATCAGCGATGTCTA 44 * ** *** ** ** * * * consensus_9108#0 ATATTGATCCTATGTATCATTACATGTCATAAAACAATCAATCTTTGGATTAATAATAAC 660 consensus_9108#1 ATATTGATCCTATGTATCATTACATGTCATAAAACAATCAATCTTTGGATTAATAATAAC 126 consensus_9108#2 ACGTTTGCTCGGGCTGT-ACGACTTGTTGATGAGTATAAAAATCGTACACATTCACTGAT 103 * ** * * * * ** *** * * ** * * * * * consensus_9108#0 AATGCTTATAAAATAGTCATAGTAGTATGGCATTATGGAGCTATTCAAAT-TTCTGTGAT 719 consensus_9108#1 AATGCTTATAAAATAGTCATAGTAGTATGGCATTATGGAGCTATTCAAAT-TTCTGTGAT 185 consensus_9108#2 ACTTCGAATGGCATTAGCACGTCAAAAACTTACTGTTAAGCTGTCAACTTACCCCCTCTC 163 * * * ** ** ** * * * * * **** * * * * * consensus_9108#0 GGGACAAAACTCTGAGAACTTTGAATTAATGAAAGAGAACA--CACACCGAC-CTGCTTT 776 consensus_9108#1 GGGACAAAACTCTGAGAACTTTGAATTAATGAAAGAGAACA--CACACCGAC-CTGCTTT 242 consensus_9108#2 GCCACAATCCTGTTGGTCCCCAGTTTTCACGTTCACAAACTATCACATGTACACAACTCC 223 * **** ** * * * * ** * * *** **** ** * ** consensus_9108#0 TACA-ACAGATTTACAATATCCTCCATATTTGATTAGGACTGTAGAAATGCTGTCCTGTT 835 consensus_9108#1 TACA-ACAGATTTACAATATCCTCCATATTTGATTAGGACTGTAGAAATGCTGTCCTGTT 301 consensus_9108#2 TGCACACCAAGTCGGAATACTATCCTTATT----TAAAAGCTTATAATCGGTATAGTGTT 279 * ** ** * * **** *** **** ** * ** ** * * * **** consensus_9108#0 TTTCTCACATAGAACTGTTTATTTACACCTAAACACAA---------------------- 873 consensus_9108#1 TTTCTCACATAGAACTGTTAATNTACACCTAAACACANATGTNTACTGCTTCTACCATAA 361 consensus_9108#2 ATTG----GTCGATATTTCATTTTAGGTTTTATTAT-TGTATAAAATGTTGGT------- 327 ** * ** * * * ** * * * consensus_9108#0 ------------------------------------------------------------ consensus_9108#1 AGTCGTCCTCGNTACTTCGATGACACATGGCTAATTCATTTGTACTTNATTTTCACATTG 421 consensus_9108#2 ------------------------------------------------------------ consensus_9108#0 ------------------------------------------------------------ consensus_9108#1 ATATTTTTAAAGCTGTCACTTACCCCTCTCGCACAATCTGTGGTCCCAGTTCACGTCACA 481 consensus_9108#2 ------------------------------------------------------------ consensus_9108#0 ------------------------------------------------------------ consensus_9108#1 ACTATAATGACCCACTCTGCACCAGTCGAATCTATCTATTAAGCTATACGNTAGGTATTG 541 consensus_9108#2 ------------------------------------------------------------ consensus_9108#0 ---------------- consensus_9108#1 CGAATCATTAGGTATA 557 consensus_9108#2 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||