cluster # 9109

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Schistosoma mansoni
cluster # 9109 cluster # 9109 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9109#0 length = 990 sequences # 7

consensus_9109#1 length = 266 sequences # 1

consensusID : consensus_9109#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 990
fasta sequence

                              [GGAAAACCGAATTAAATGAAAATACAAATG--AATCTTCGTG-GTGAAAA-TCGGAAG-CCAAACCACTCCTTATTCATTAACACAGGCAGAT-ATACAGATTCTATTCCGGATACTAAAAATAAGCCAAATTTAACTGGTGATATTTTATTGCCTTTGGATGAAGATTGTCCAAGAGATGTTATGATAGTTGAAACCCCGGATGGTGAAACGCTTTATGTTCATCATCAGCCTAATGAAGACGGTTCTAGTGGTCTAGTCATTTTAAATGACGCAGGTGAACAGGTGAATAATCCAACTTTGATGGCACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTGAAAAAGAGTCCAAATAACAGGAACCCGAGGCCAGAATTCAACAAGACAATCGCTAACTATGATAGGGTTTTTCAATCTAGCACTAATGGATGTCAAACAGGTCGACCACTAAGCCCTACGCATACTATAGATAATGAAGATGATGATGAAGATCTCGACAACGATGAATCAGAATCATTAGTAGCTCACTTAGCCGCATTCGCCAATCAGCCTGAATCCCAACAAACAACTATCTGTGTAGAAGGAATGGGATCTGGTGCTTCGACCCATGACCTAATAATGTGGTGCTTGTACAACGGAATATTTATTCGTGGCTATGCAGATGAACCAACTTTTGTCATCGAATTCGTTTACCAAGGTGAGGCATACACCCTTTCGGCGTCATATGATTCACAATCTGGTACTATCAATTTCTATCATGTGGAGACTAACCAGAAGTTATAAGAACATCAAAACAGAAAGTTATTTCAATTTTATTCTGTACATACGTTTATTGCATTTTTATCAAAAACATAAAAACCTTGTTTACTTAATAATAAGTTTAAAAGAATGTAAAAAAAAAAAAAAAAA]

[+] EMBL CD083512             [GGAAAACCGAATTAAATGAAAATACAAATGTCAATCTTCGTG GTGAAAATTCGGAAGCCCAAACCACTCCTTATTCATTAACACAGGCAGATAATACAGATTCTATTCCGGATACTAAAAATAAGCCAAATTTAACTGGTGATATTTTATTGCCTTTGGATGAAGATTGTCCAAGAGATGTTATGATAGTTGAAACCCCGGATGGTGAAACGCTTTATGTTCATCATCAGCCTAATGAAGACGGTTCTAGTGGTCTAGTCATTTTAAATGACGCAGGTGAACAGGTGAATAATCCAACTTTGATGGCACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTG  AAAGAGTCCAAATAACAGGAACCCGAGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD083950             [                             G  AATCGGCACGAGGGAAAA TCGGAAG TCAAACCACTCCTTATTCATTAACACAGGCAGAT ATACAGATTCTATTCCGGATACTAAAAATAAGCCAAATTTAACTGGTGATATTTT TTGCCTTTGGATGAAGATTGTCCAAGAGATGTTATGATAGTTGAAACCCCGGATGGTGAAACGCTTTATGTTCATCATCAGCCTAATGAAGACGGTTCTAGTGGTCTAGTCATTTTAAATGACGCAGGTGAACAGGTGAATAATCCAACTTTGATGGCACAAGTCATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTGAAAAAGAGTCCAAATAACAGGAACCCGAGGCCAGAATTCAACAAGACAATCGCTAACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD113505             [                                                                                                ACAGATTCTATTCCGGATACTAAAAATAAGCCAAATTTAACTGGTGATATTTTATTGCCTTTGGATGAAGATTGTCCAAGAGATGTTATGATAGTTGAAACCCCGGATGGTGAAACGCTTTATGTTCATCATCAGCCTAATGAAGACGGTTCTAGTGGTCTAGTCATTTTAAATGACGCAGGTGAACAGGTGAATAATCCAACTTTGATGGCACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTGAAAAAGAGTCCAAATAACAGGAACCCGAGGCCAGAATTCAACAAGACAATCGCTAACTATGATAGGGTTTTTCAATCTAGCACTAATGGATGTCAAACAGGTCGACCACTAAGCCCTACGCATACTATAGATAATGAAGATGATGATGAAGATCTCGACAACGATGAATCAGAATCATTAGTAGCTCACTTAGCCGCATTCGCCAATCAGCCTGAATCCCAAC                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD113509             [                                                                                                ACAGATTCTATTCCGGATACTAAAAATAAGCCAAATTTAACTGGTGATATTTTATTGCCTTTGGATGAAGATTGTCCAAGAGATGTTATGATAGTTGAAACCCCGGATGGTGAAACGCTTTATGTTCATCATCAGCCTAATGAAGACGGTTCTAGTGGTCTAGTCATTTTAAATGACGCAGGTGAACAGGTGAATAATCCAACTTTGATGGCACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTGAAAAAGAGTCCAAATAACAGGAACCCGAGGCCAGAATTCAACAAGACAATCGCTAACTATGATAGGGTTTTTCAATCTAGCACTAATGGATGTCAAACAGGTCGACCACTAAGCCCTACGCATACTATAGATAATGAAGATGATGATGAAGATCTCGACAACGATGAATCAGAATCATTAGTAGCTCACTTAGCCGCATTCGCCAATCAGCCTGAATCCCAAC                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD188963             [                                                                                                                           AAGCCAAATTTAACTGGTGATATTTTATTGCCTTTGGATGAAGATTGTCCAAGAGATGTTATGATAGTTGAAACCCCGGATGGTGAAACGCTTTATGTTCATCATCAGCCTAATGAAGACGGTTCTAGTGGTCTAGTCATTTTAAATGACGCAGGTGAACAGGTGAATAATCCAACTTTGATGGCACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATAGTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTGAAAAAGAGTTCAAATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL BG930978             [                                                                                                                                                                                                                                                                                                                                        TCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTGAAAAAGAGTCCAAATAACAGGAt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL AI395147             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGATCTCGACAACGATG ATCAGAATCATTAGTAGCTCACTTAGCCGCATTCGCCATNCAGCTTGAATCCCAACAAACAACTATCTGTGTAGAAGGAATGGGATCTGGTGCTTCGACCCATGACCTAATAATGTGGTGCTTGTACAACGGAATATTTATTCGTGGCTATGCAGATGAACCAACTTTTGTCATCGAATTCGTTTACCAAGGTGAGGCATACACCCTTTCGGCGTCATATGATTCACAATCTGGTACTATCAATTTCTATCATGTGGAGACTAACCAGAAGTTATAAGAACATCAAAACAGAAAGTTATTTCAATTTTATTCTGTACATACGTTTATTGCATTTTTATCAAAAACATAAAAACCTTGTTTACTTAATAATAAGTTTAAAAGAATGTAAAAAAAAAAAAAAAAA]




>consensus_9109#0
GGAAAACCGAATTAAATGAAAATACAAATGAATCTTCGTGGTGAAAATCGGAAGCCAAAC
CACTCCTTATTCATTAACACAGGCAGATATACAGATTCTATTCCGGATACTAAAAATAAG
CCAAATTTAACTGGTGATATTTTATTGCCTTTGGATGAAGATTGTCCAAGAGATGTTATG
ATAGTTGAAACCCCGGATGGTGAAACGCTTTATGTTCATCATCAGCCTAATGAAGACGGT
TCTAGTGGTCTAGTCATTTTAAATGACGCAGGTGAACAGGTGAATAATCCAACTTTGATG
GCACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGT
GCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTG
AAAAAGAGTCCAAATAACAGGAACCCGAGGCCAGAATTCAACAAGACAATCGCTAACTAT
GATAGGGTTTTTCAATCTAGCACTAATGGATGTCAAACAGGTCGACCACTAAGCCCTACG
CATACTATAGATAATGAAGATGATGATGAAGATCTCGACAACGATGAATCAGAATCATTA
GTAGCTCACTTAGCCGCATTCGCCAATCAGCCTGAATCCCAACAAACAACTATCTGTGTA
GAAGGAATGGGATCTGGTGCTTCGACCCATGACCTAATAATGTGGTGCTTGTACAACGGA
ATATTTATTCGTGGCTATGCAGATGAACCAACTTTTGTCATCGAATTCGTTTACCAAGGT
GAGGCATACACCCTTTCGGCGTCATATGATTCACAATCTGGTACTATCAATTTCTATCAT
GTGGAGACTAACCAGAAGTTATAAGAACATCAAAACAGAAAGTTATTTCAATTTTATTCT
GTACATACGTTTATTGCATTTTTATCAAAAACATAAAAACCTTGTTTACTTAATAATAAG
TTTAAAAGAATGTAAAAAAAAAAAAAAAAA

consensusID : consensus_9109#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 266
fasta sequence

                              [AAAGAGATGTTATGATAGTTGAAACCCCGGATGGTGAAACGCTTNNNNTTTTTTTTTCATCCTAATGAAGACGGAGGTAGTGGTCTAGTCATTTTAAATGACGCAGGGGGACAGGTGAAGAATCCCACCTTTATGTGACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTGAAAAAGAGTCC]

[-] EMBL CD122983             [AAAGAGATGTTATGATAGTTGAAACCCCGGATGGTGAAACGCTTNNNNTTTTTTTTTCATCCTAATGAAGACGGAGGTAGTGGTCTAGTCATTTTAAATGACGCAGGGGGACAGGTGAAGAATCCCACCTTTATGTGACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTGAAAAAGAGTCC]




>consensus_9109#1
AAAGAGATGTTATGATAGTTGAAACCCCGGATGGTGAAACGCTTNNNNTTTTTTTTTCAT
CCTAATGAAGACGGAGGTAGTGGTCTAGTCATTTTAAATGACGCAGGGGGACAGGTGAAG
AATCCCACCTTTATGTGACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATC
AGTGAAACATTAAGTGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCA
CTACTTCAACGCTTGAAAAAGAGTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9109#0      GGAAAACCGAATTAAATGAAAATACAAATGAATCTTCGTGGTGAAAATCGGAAGCCAAAC 60
consensus_9109#1      ------------------------------------------------------------
                                                                                  

consensus_9109#0      CACTCCTTATTCATTAACACAGGCAGATATACAGATTCTATTCCGGATACTAAAAATAAG 120
consensus_9109#1      ------------------------------------------------------------
                                                                                  

consensus_9109#0      CCAAATTTAACTGGTGATATTTTATTGCCTTTGGATGAAGATTGTCCAAGAGATGTTATG 180
consensus_9109#1      ----------------------------------------------AAAGAGATGTTATG 14
                                                                     *************

consensus_9109#0      ATAGTTGAAACCCCGGATGGTGAAACGCTTTATGTTCATCAT-CAGCCTAATGAAGACGG 239
consensus_9109#1      ATAGTTGAAACCCCGGATGGTGAAACGCTTNNNNTTTTTTTTTCATCCTAATGAAGACGG 74
                      ******************************    **  *  * ** **************

consensus_9109#0      TTCTAGTGGTCTAGTCATTTTAAATGACGCAGGTGAACAGGTGAATAATCCAACTTTGAT 299
consensus_9109#1      AGGTAGTGGTCTAGTCATTTTAAATGACGCAGGGGGACAGGTGAAGAATCCCACCTTTAT 134
                         ****************************** * ********* ***** ** ** **

consensus_9109#0      GGCACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAG 359
consensus_9109#1      GTGACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAG 194
                      *  *********************************************************

consensus_9109#0      TGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTT 419
consensus_9109#1      TGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTT 254
                      ************************************************************

consensus_9109#0      GAAAAAGAGTCCAAATAACAGGAACCCGAGGCCAGAATTCAACAAGACAATCGCTAACTA 479
consensus_9109#1      GAAAAAGAGTCC------------------------------------------------ 266
                      ************                                                

consensus_9109#0      TGATAGGGTTTTTCAATCTAGCACTAATGGATGTCAAACAGGTCGACCACTAAGCCCTAC 539
consensus_9109#1      ------------------------------------------------------------
                                                                                  

consensus_9109#0      GCATACTATAGATAATGAAGATGATGATGAAGATCTCGACAACGATGAATCAGAATCATT 599
consensus_9109#1      ------------------------------------------------------------
                                                                                  

consensus_9109#0      AGTAGCTCACTTAGCCGCATTCGCCAATCAGCCTGAATCCCAACAAACAACTATCTGTGT 659
consensus_9109#1      ------------------------------------------------------------
                                                                                  

consensus_9109#0      AGAAGGAATGGGATCTGGTGCTTCGACCCATGACCTAATAATGTGGTGCTTGTACAACGG 719
consensus_9109#1      ------------------------------------------------------------
                                                                                  

consensus_9109#0      AATATTTATTCGTGGCTATGCAGATGAACCAACTTTTGTCATCGAATTCGTTTACCAAGG 779
consensus_9109#1      ------------------------------------------------------------
                                                                                  

consensus_9109#0      TGAGGCATACACCCTTTCGGCGTCATATGATTCACAATCTGGTACTATCAATTTCTATCA 839
consensus_9109#1      ------------------------------------------------------------
                                                                                  

consensus_9109#0      TGTGGAGACTAACCAGAAGTTATAAGAACATCAAAACAGAAAGTTATTTCAATTTTATTC 899
consensus_9109#1      ------------------------------------------------------------
                                                                                  

consensus_9109#0      TGTACATACGTTTATTGCATTTTTATCAAAAACATAAAAACCTTGTTTACTTAATAATAA 959
consensus_9109#1      ------------------------------------------------------------
                                                                                  

consensus_9109#0      GTTTAAAAGAATGTAAAAAAAAAAAAAAAAA 990
consensus_9109#1      -------------------------------