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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9110#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 777 fasta sequence
[TCTCAATTTTGTTGTCGCCAGTTTCAACTTTAGATGTCTCTGGTTACACTCCTGAACATAGGTTCAGGGAGAATGGGATTTTCAGTCAGATGGATGGAATTTCGATTAAATCATCGTCTGGAGTTCTAACTTTAGTTTCCGGGGGTCACGTATTTTCAACCGACGAAAAACAGCAGCTGCAGGAG-TCTGCCAGAGCCGGGTACA-TGTATAGCG-TTCGTATGCCTG-TTAAAAACGAAGAATATATTGAAGCTTCGATTCGTTCGTGTCAAATTATTTCCTCTAGGATGAGATTAAAGCTCACAGTTAGTGTGAATGACGCCGGGGACCCAGTTGCAATACATATGAGTACTCCAAAATTTATCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACATTATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGGAGGAAATGTTGGAGGTGGTAATCAGCAGTAGACGAAAACTTAGTACAAATCAATCCATAATACTATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTTTATTTTATATGTTATTTTTCATTTTGTTAATATAAAGTTTTGACTTGAAAAAAAAAAAAAAAAAAAAAAAAACATCCATGCAGCTGCATTACCGT]
[+] EMBL CD164890 [TCTCAATTTTGTTGTCGCCAGTTTCAACTTTAGATGTCTCTGGTTACACTCCTGAACATAGGTTCAGGGAGAATGGGATTTTCAGTCAGATGGATGGAATTTCGATTAAATCATCGTCTGGAGTTCTAACTTTAGTTTCCGGGGGTCACGTATTTTCAACCGACGAAAAACAGCAGCTGCAGGAG TCTGCCAGAGCCGGGTACA TGTATAGCG TTCGTATGCCTG TTAAAAACGAAGAATATATTGAAGCTTCGATTCGTTCGTGTCAAATTATTTCCTCTAGGATGAGATTAAAGCTCACAGTTAGTGTGAATGACGCCGGGGACCCAGTTGCAATACATATGAGTACTCCAAAATTTATCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGTCCGGAAACTGCANAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGNGCCTACATTATTCCAGCAGTTNTCTTATTTATTCTGTTCTCCAGTATGCANGATCCTAATGCACCTGNAGGGAGTGTTGNAG ]
[-] EMBL CD171553 [ TCCGGGGGTCACGTTTTTTCAACCGACGAAAAACAGCAGCTGCAGGAGTTCTGCCAGAGCCGGGTACATTGTATAGCGTTTCGTATGCCTGTTTAAAAACGAAGAATATTTTGAAGCTTCGATTCGTTCGTGTCAAATTTTTTCCTCTAGGATGAGATTAAAG ]
[-] EMBL AI395439 [ atttttgacCTCCAGGATTTATCTTAAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACATTATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCAGCTGGAGGAAATGTTGGAGGTGGTAATCAGCAGTAGACGAAAACTTAGTACAAATCAATCCATAATACTATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTTTATTTTATATGTTATTTTTCATTTTGTTAATATAAAGTTTTGACTTGAAAAAAAAAAAAAAAA ]
[-] EMBL AI395636 [ cCCAAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACATTATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGGAGGAAATGTTGGAGGTGGTAATCAGCAGTAGACGAAAACTTAGTACAAATCAATCCATAATACTATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTCTATTTTATATTTTATTNTTCATTTTGGGAGGCCCAAGTTTTGACTTGNAAAAAAAA ]
[-] EMBL AA756908 [ AGCAGTAGACGAAAACTTAGTACAAATCAATCCATAATACNATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTTTATTTTATATGTTATTTTTCATTTTGTTAATATAAAGTTTTGACTTGAAAAAAAAAAAAAAAAAAAAAAAAACATCCATGCAGCTGCATTACCGT]
consensusID : consensus_9110#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[TATGTAGCTTCTATTTATGAACTTTCAAGGAGTCTGCCAGAGCCGGGTACATGTATAGCGTTCGTATGCCTGTTAAAAACGAAGAATATATTGAAGCTTCGATTCGTTCGGTAACGGAATTTTTGATCTAGCGTGTTAGTGTCAAATTATTTCCTCTAGGATGAGATTAAAGCTCACAGTTAGTGTGAATGACGCCGGGGACCCAGTTGCAATACATATGAGTACTCCAAAGTATGATTGCTCATATGACATTTCTGAGAGTTTTCTGGACCTTCCAGATTTATCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGGTATAAATAATATCCATGTCTTACTTTTTAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACATTATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGNNAG]
[+] EMBL CD134159 [TATGTAGCTTCTATTTATGAACTTTCAAGGAGTCTGCCAGAGCCGGGTACATGTATAGCGTTCGTATGCCTGTTAAAAACGAAGAATATATTGAAGCTTCGATTCGTTCGGTAACGGAATTTTTGATCTAGCGTGTTAGTGTCAAATTATTTCCTCTAGGATGAGATTAAAGCTCACAGTTAGTGTGAATGACGCCGGGGACCCAGTTGCAATACATATGAGTACTCCAAAGTATGATTGCTCATATGACATTTCTGAGAGTTTTCTGGACCTTCCAGATTTATCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGGTATAAATAATATCCATGTCTTACTTTTTAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACATTATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGNNAG]
consensusID : consensus_9110#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 476 fasta sequence
[GGCTCGAGGACGGGGACCCAGTTGCAATACATATGAGTACTCCTAAGTATGATTGCTCATATGACATTTCTGAGAGTTTTCTGGACCTTCCAGATTTATCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACATTATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGGAGGAAATGTTGGAGGTGGTAATCAGCAGTAGACGAAAACTTAGTACAAATCAATCCATAATACTATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTTTATTTTATATGTTATTTTTCATTTTGTTAATATAAAAAAAAATATGNCCGCGGGCG]
[+] EMBL CD082156 [GGCTCGAGGACGGGGACCCAGTTGCAATACATATGAGTACTCCTAAGTATGATTGCTCATATGACATTTCTGAGAGTTTTCTGGACCTTCCAGATTTATCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACATTATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGGAGGAAATGTTGGAGGTGGTAATCAGCAGTAGACGAAAACTTAGTACAAATCAATCCATAATACTATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTTTATTTTATATGTTATTTTTCATT ]
[-] EMBL CD075772 [ CGGGGACCCAGTTGCAATACATATGAGTACTCCAAAGTATGATTGCTCATATGACATTTCTGAGAGTTTTCTGGACCTTCCAGATTTATCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACATTATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGGAGGAAATGTTGGAGGTGGTAATCAGCAGTAGACGAAAACTTAGTACAAATCAATCCATAATACTATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTTTATTTTATATGTTATTTTTCATTTTGTTAATATAAAAAAAAATATGNCCGCGGGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9110#0 TCTCAATTTTGTTGTCGCCAGTTTCAACTTTAGATGTCTCTGGTTACACTCCTGAACATA 60
consensus_9110#2 ------------------------------------------------------------
consensus_9110#1 ------------------------------------------------------------
consensus_9110#0 GGTTCAGGGAGAATGGGATTTTCAGTCAGATGGATGGAATTTCGATTAAATCATCGTCTG 120
consensus_9110#2 ------------------------------------------------------------
consensus_9110#1 -------TATGTAGCTTCTATTTATGAACTTTCAAGGAGTCTGCCAGAGCCGGGTACATG 53
consensus_9110#0 GAGTTCTAACTTTAGTTTCCGGGGGTCACGTATTTTCAACCGACGAAAAACAGCAGCTGC 180
consensus_9110#2 ------------------------------------------------------------
consensus_9110#1 TATAGCGTTCGTATGCCTGTTAAAAACGAAGAATATATTGAAGCTTCGATTCGTTCGGTA 113
consensus_9110#0 AGGAGTCTGCCAGAGCCGGGTACATGTATAGCGTTCGTATGCCTGTTAAAAACGAAGAAT 240
consensus_9110#2 ------------------------------------------------------------
consensus_9110#1 ACGGAATTTTTGATCTAGCGTGTTAGTGTCAAATTATTTCCTCTAGGATGAGATTAAAGC 173
consensus_9110#0 ATATTGAAGCTTCGATTCGTTCGTGTCAAATTATTTCCTCTAGGATGAGATTAAAGCTCA 300
consensus_9110#2 -------------GGCTCGAGGACGGGGACCCAGTTGCAATAC----ATATGAGTACTCC 43
consensus_9110#1 TCACAGTTAGTGTGAAT-GACGCCGGGGACCCAGTTGCAATAC----ATATGAGTACTCC 228
* * * * * * ** * ** * ** * ***
consensus_9110#0 CAGTTAGTGTGAATGACGCCGGGGACCCAGTTGCAATACATATGAGTACTCCAAAATTTA 360
consensus_9110#2 TA---AGTATGATTG-CTCATATGACATTTCTGAGAGTTTTCTGGAC-CTTCCAGATTTA 98
consensus_9110#1 AA---AGTATGATTG-CTCATATGACATTTCTGAGAGTTTTCTGGAC-CTTCCAGATTTA 283
* *** *** ** * * *** ** * * ** ** * * *****
consensus_9110#0 TCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAG------------------- 401
consensus_9110#2 TCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAG------------------- 139
consensus_9110#1 TCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGGTATAAATAATATCCATGT 343
*****************************************
consensus_9110#0 ------------TCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGA 449
consensus_9110#2 ------------TCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGA 187
consensus_9110#1 CTTACTTTTTAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGA 403
************************************************
consensus_9110#0 AATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACAT 509
consensus_9110#2 AATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACAT 247
consensus_9110#1 AATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACAT 463
************************************************************
consensus_9110#0 TATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGG 569
consensus_9110#2 TATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGG 307
consensus_9110#1 TATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGN 523
***********************************************************
consensus_9110#0 AGGAAATGTTGGAGGTGGTAATCAGCAGTAGACGAAAACTTAGTACAAATCAATCCATAA 629
consensus_9110#2 AGGAAATGTTGGAGGTGGTAATCAGCAGTAGACGAAAACTTAGTACAAATCAATCCATAA 367
consensus_9110#1 NAG--------------------------------------------------------- 526
*
consensus_9110#0 TACTATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTTTATTTTA 689
consensus_9110#2 TACTATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTTTATTTTA 427
consensus_9110#1 ------------------------------------------------------------
consensus_9110#0 TATGTTATTTTTCATTTTGTTAATATAAAGTTTTGACTTGAAAAAAAAAAAAAAAAAAAA 749
consensus_9110#2 TATGTTATTTTTCATTTTGTTAATATAAAAAAA-AATATGNCCGCGGGCG---------- 476
consensus_9110#1 ------------------------------------------------------------
consensus_9110#0 AAAAACATCCATGCAGCTGCATTACCGT 777
consensus_9110#2 ----------------------------
consensus_9110#1 ----------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||