These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9110#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 777 fasta sequence [TCTCAATTTTGTTGTCGCCAGTTTCAACTTTAGATGTCTCTGGTTACACTCCTGAACATAGGTTCAGGGAGAATGGGATTTTCAGTCAGATGGATGGAATTTCGATTAAATCATCGTCTGGAGTTCTAACTTTAGTTTCCGGGGGTCACGTATTTTCAACCGACGAAAAACAGCAGCTGCAGGAG-TCTGCCAGAGCCGGGTACA-TGTATAGCG-TTCGTATGCCTG-TTAAAAACGAAGAATATATTGAAGCTTCGATTCGTTCGTGTCAAATTATTTCCTCTAGGATGAGATTAAAGCTCACAGTTAGTGTGAATGACGCCGGGGACCCAGTTGCAATACATATGAGTACTCCAAAATTTATCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACATTATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGGAGGAAATGTTGGAGGTGGTAATCAGCAGTAGACGAAAACTTAGTACAAATCAATCCATAATACTATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTTTATTTTATATGTTATTTTTCATTTTGTTAATATAAAGTTTTGACTTGAAAAAAAAAAAAAAAAAAAAAAAAACATCCATGCAGCTGCATTACCGT] [+] EMBL CD164890 [TCTCAATTTTGTTGTCGCCAGTTTCAACTTTAGATGTCTCTGGTTACACTCCTGAACATAGGTTCAGGGAGAATGGGATTTTCAGTCAGATGGATGGAATTTCGATTAAATCATCGTCTGGAGTTCTAACTTTAGTTTCCGGGGGTCACGTATTTTCAACCGACGAAAAACAGCAGCTGCAGGAG TCTGCCAGAGCCGGGTACA TGTATAGCG TTCGTATGCCTG TTAAAAACGAAGAATATATTGAAGCTTCGATTCGTTCGTGTCAAATTATTTCCTCTAGGATGAGATTAAAGCTCACAGTTAGTGTGAATGACGCCGGGGACCCAGTTGCAATACATATGAGTACTCCAAAATTTATCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGTCCGGAAACTGCANAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGNGCCTACATTATTCCAGCAGTTNTCTTATTTATTCTGTTCTCCAGTATGCANGATCCTAATGCACCTGNAGGGAGTGTTGNAG ] [-] EMBL CD171553 [ TCCGGGGGTCACGTTTTTTCAACCGACGAAAAACAGCAGCTGCAGGAGTTCTGCCAGAGCCGGGTACATTGTATAGCGTTTCGTATGCCTGTTTAAAAACGAAGAATATTTTGAAGCTTCGATTCGTTCGTGTCAAATTTTTTCCTCTAGGATGAGATTAAAG ] [-] EMBL AI395439 [ atttttgacCTCCAGGATTTATCTTAAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACATTATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCAGCTGGAGGAAATGTTGGAGGTGGTAATCAGCAGTAGACGAAAACTTAGTACAAATCAATCCATAATACTATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTTTATTTTATATGTTATTTTTCATTTTGTTAATATAAAGTTTTGACTTGAAAAAAAAAAAAAAAA ] [-] EMBL AI395636 [ cCCAAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACATTATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGGAGGAAATGTTGGAGGTGGTAATCAGCAGTAGACGAAAACTTAGTACAAATCAATCCATAATACTATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTCTATTTTATATTTTATTNTTCATTTTGGGAGGCCCAAGTTTTGACTTGNAAAAAAAA ] [-] EMBL AA756908 [ AGCAGTAGACGAAAACTTAGTACAAATCAATCCATAATACNATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTTTATTTTATATGTTATTTTTCATTTTGTTAATATAAAGTTTTGACTTGAAAAAAAAAAAAAAAAAAAAAAAAACATCCATGCAGCTGCATTACCGT] consensusID : consensus_9110#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [TATGTAGCTTCTATTTATGAACTTTCAAGGAGTCTGCCAGAGCCGGGTACATGTATAGCGTTCGTATGCCTGTTAAAAACGAAGAATATATTGAAGCTTCGATTCGTTCGGTAACGGAATTTTTGATCTAGCGTGTTAGTGTCAAATTATTTCCTCTAGGATGAGATTAAAGCTCACAGTTAGTGTGAATGACGCCGGGGACCCAGTTGCAATACATATGAGTACTCCAAAGTATGATTGCTCATATGACATTTCTGAGAGTTTTCTGGACCTTCCAGATTTATCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGGTATAAATAATATCCATGTCTTACTTTTTAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACATTATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGNNAG] [+] EMBL CD134159 [TATGTAGCTTCTATTTATGAACTTTCAAGGAGTCTGCCAGAGCCGGGTACATGTATAGCGTTCGTATGCCTGTTAAAAACGAAGAATATATTGAAGCTTCGATTCGTTCGGTAACGGAATTTTTGATCTAGCGTGTTAGTGTCAAATTATTTCCTCTAGGATGAGATTAAAGCTCACAGTTAGTGTGAATGACGCCGGGGACCCAGTTGCAATACATATGAGTACTCCAAAGTATGATTGCTCATATGACATTTCTGAGAGTTTTCTGGACCTTCCAGATTTATCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGGTATAAATAATATCCATGTCTTACTTTTTAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACATTATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGNNAG] consensusID : consensus_9110#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 476 fasta sequence [GGCTCGAGGACGGGGACCCAGTTGCAATACATATGAGTACTCCTAAGTATGATTGCTCATATGACATTTCTGAGAGTTTTCTGGACCTTCCAGATTTATCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACATTATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGGAGGAAATGTTGGAGGTGGTAATCAGCAGTAGACGAAAACTTAGTACAAATCAATCCATAATACTATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTTTATTTTATATGTTATTTTTCATTTTGTTAATATAAAAAAAAATATGNCCGCGGGCG] [+] EMBL CD082156 [GGCTCGAGGACGGGGACCCAGTTGCAATACATATGAGTACTCCTAAGTATGATTGCTCATATGACATTTCTGAGAGTTTTCTGGACCTTCCAGATTTATCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACATTATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGGAGGAAATGTTGGAGGTGGTAATCAGCAGTAGACGAAAACTTAGTACAAATCAATCCATAATACTATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTTTATTTTATATGTTATTTTTCATT ] [-] EMBL CD075772 [ CGGGGACCCAGTTGCAATACATATGAGTACTCCAAAGTATGATTGCTCATATGACATTTCTGAGAGTTTTCTGGACCTTCCAGATTTATCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGAAATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACATTATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGGAGGAAATGTTGGAGGTGGTAATCAGCAGTAGACGAAAACTTAGTACAAATCAATCCATAATACTATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTTTATTTTATATGTTATTTTTCATTTTGTTAATATAAAAAAAAATATGNCCGCGGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9110#0 TCTCAATTTTGTTGTCGCCAGTTTCAACTTTAGATGTCTCTGGTTACACTCCTGAACATA 60 consensus_9110#2 ------------------------------------------------------------ consensus_9110#1 ------------------------------------------------------------ consensus_9110#0 GGTTCAGGGAGAATGGGATTTTCAGTCAGATGGATGGAATTTCGATTAAATCATCGTCTG 120 consensus_9110#2 ------------------------------------------------------------ consensus_9110#1 -------TATGTAGCTTCTATTTATGAACTTTCAAGGAGTCTGCCAGAGCCGGGTACATG 53 consensus_9110#0 GAGTTCTAACTTTAGTTTCCGGGGGTCACGTATTTTCAACCGACGAAAAACAGCAGCTGC 180 consensus_9110#2 ------------------------------------------------------------ consensus_9110#1 TATAGCGTTCGTATGCCTGTTAAAAACGAAGAATATATTGAAGCTTCGATTCGTTCGGTA 113 consensus_9110#0 AGGAGTCTGCCAGAGCCGGGTACATGTATAGCGTTCGTATGCCTGTTAAAAACGAAGAAT 240 consensus_9110#2 ------------------------------------------------------------ consensus_9110#1 ACGGAATTTTTGATCTAGCGTGTTAGTGTCAAATTATTTCCTCTAGGATGAGATTAAAGC 173 consensus_9110#0 ATATTGAAGCTTCGATTCGTTCGTGTCAAATTATTTCCTCTAGGATGAGATTAAAGCTCA 300 consensus_9110#2 -------------GGCTCGAGGACGGGGACCCAGTTGCAATAC----ATATGAGTACTCC 43 consensus_9110#1 TCACAGTTAGTGTGAAT-GACGCCGGGGACCCAGTTGCAATAC----ATATGAGTACTCC 228 * * * * * * ** * ** * ** * *** consensus_9110#0 CAGTTAGTGTGAATGACGCCGGGGACCCAGTTGCAATACATATGAGTACTCCAAAATTTA 360 consensus_9110#2 TA---AGTATGATTG-CTCATATGACATTTCTGAGAGTTTTCTGGAC-CTTCCAGATTTA 98 consensus_9110#1 AA---AGTATGATTG-CTCATATGACATTTCTGAGAGTTTTCTGGAC-CTTCCAGATTTA 283 * *** *** ** * * *** ** * * ** ** * * ***** consensus_9110#0 TCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAG------------------- 401 consensus_9110#2 TCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAG------------------- 139 consensus_9110#1 TCTATAAGTTTAACAGTACAGAAACCGAAATTAGGACCAAGGTATAAATAATATCCATGT 343 ***************************************** consensus_9110#0 ------------TCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGA 449 consensus_9110#2 ------------TCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGA 187 consensus_9110#1 CTTACTTTTTAGTCCGGAAACTGCAAAGTATCTAGAGAAACTCGAGAAGCAACGCGAAGA 403 ************************************************ consensus_9110#0 AATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACAT 509 consensus_9110#2 AATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACAT 247 consensus_9110#1 AATGGCTCGTGCTGAGCAAAGTGACAATCGTTCTTTCTTTGCTAAATATTGGACCTACAT 463 ************************************************************ consensus_9110#0 TATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGG 569 consensus_9110#2 TATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGG 307 consensus_9110#1 TATTCCAGCAGTTTTCTTATTTATTCTGTTCTCCAGTATGCAAGATCCTAATGCACCTGN 523 *********************************************************** consensus_9110#0 AGGAAATGTTGGAGGTGGTAATCAGCAGTAGACGAAAACTTAGTACAAATCAATCCATAA 629 consensus_9110#2 AGGAAATGTTGGAGGTGGTAATCAGCAGTAGACGAAAACTTAGTACAAATCAATCCATAA 367 consensus_9110#1 NAG--------------------------------------------------------- 526 * consensus_9110#0 TACTATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTTTATTTTA 689 consensus_9110#2 TACTATTTAAGTATTTTGTAAATCGTGTTTAGTTTTAACGATACTTGTATGTTTATTTTA 427 consensus_9110#1 ------------------------------------------------------------ consensus_9110#0 TATGTTATTTTTCATTTTGTTAATATAAAGTTTTGACTTGAAAAAAAAAAAAAAAAAAAA 749 consensus_9110#2 TATGTTATTTTTCATTTTGTTAATATAAAAAAA-AATATGNCCGCGGGCG---------- 476 consensus_9110#1 ------------------------------------------------------------ consensus_9110#0 AAAAACATCCATGCAGCTGCATTACCGT 777 consensus_9110#2 ---------------------------- consensus_9110#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||