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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1033 fasta sequence
[TANAACGAGCATATGTCTGGAGATTTTCGCAACATTCGTGGAGCCAACTAATCTTATCCATCATCACTCTTAGTAAATGGGAGACTTGAGGGAAATAACCGTACTTGCAATCTGATAATTGCTTGCTGAAGCCCTCAAAAACATCACTAGATAAGACGAAATCAAACTTTTCCTTCCCATTACAAATAATGTGAACGACAATTTGCAAAAATCGAAAAGTATCTTTGACTTTATTGGCTTTAGAACATAAGGTCGCTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAACGGCGGAATATCTAGCTTCTGAAGACGTTTCTGAAAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGAGTTTGAAGACATTAGGTTTTGATAAGTTTC-TTTTAAAAAACAACTTAAGTTTGTGATTAAATGTTTCGGTGCTTGAAGACTCATTTCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAACAGGACAATATGTTGAAGCAATGTTTTAGCGAACTCGTCATCAATCTCCTTTATTCTACCAGATGCACAAAGCACTCTTGTGCATGCTAAGTACGCCAGTTTCACAGATGAACGTTCATTTTGAGTGGACGGCTCTGAGGCAAAAATTTGAACACTCATGGATTCCGCTAGTTCTTTGGTTGAAGTTTCCGTTGGAAAATCCTTGAGGAAACGTATAAGACATTGCTCATAGCTGGACCTTGTAGACTCCTCAAATGACTTCAGACCTTTAACAAGCCTTTGCCTTGTATACGTGAAGTAAGTGGTTTTCACTTCATCCGTTTTACCACTTAGCAAAGTTACCAGCTTGTTAGAAGATTCTATTCTTTGTTTTTCATCTCGCGCTGATAATCCCCAAAACAGATCCAAAAAAGCACGGTC]
[+] EMBL CD126105 [TANAACGAGCATATGTCTGGAGATTTTCGCAACATTCGTGGAGCCAACTAATCTTATCCATCATCACTCTTAGTAAATGGGAGACTTGAGGGAAATAACCGTACTTGCAATCTGATAATTGCTTGCTGAAGCCCTCAAAAACATCACTAGATAAGACGAAATCAAACTTTTCCTTCCCATTACAAATAATGTGAACGACAATTTGCAAAAATCGAAAAGTATCTTTGACTTTATTGGCTTTAGAACATAAGGTCGCTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGAAGAATTCCAAATAAAA ]
[+] EMBL CD170288 [ gaGCGCTTTAAGACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAACGGCGGAATATCTAGCTTCTGAAGACGTTTCTGAAAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGAGTTTGAAGGCATTAGGTTTTGATAAGTTTC TTTTAAAAAACAACTTAAGTTTGTGATTAAATGTTTCGGTGCTTGAAGACTCATTTCTGATATTG ]
[-] EMBL CD115833 [ AAGCGATGTGGAAAAGACAGAATGCGCAGCAAGAGTTCGCCAGTGAAATCAGAATTTGAAGACATTAGGTTTTGATAAGTGTCTTTTTAAAAAACAACTTAAGTTTGTAATAAAATGTTTCGGTGCTTAAAGACTCATTTCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAACAGGACAATATGTTGAAGCAATGTTTTAGCGAACTCGTCATCAATCTCCTTTATTCTACCAGATGCACAAAGCACTCTTGTGCATGCTAAGTACGCCAGTTTCACAGATGAACGTTCATTTTGAGTGGACGGCTCTGAGGCAAAAATTTGAACACTCATGGATTCCGCTAGTTCTTTGGTTGAAGTTTCCGTTGGAAAATCCTTGAGGAAACGTATAAGACATTGCTCATAGCTGGACCTTGTAGACTCCTCAAATGACTTCAGACCTTTAACAAGCCTTTGCCTTGTATACGTGAAGTAAGTGGTTTTCACTTCATCCGTTTTACCACTTAGCAAAGTTACCAGCTTGTTAGAAGATCCTATTCTTTGTTTTTCATCTCGCGCTGATAATCCCCAAAACAGATCCAAAAAAGCACGGTC]
[-] EMBL CD154256 [ TTCGCCAGTGATATCCGAGTNTGAAGACATTAGGTTNTGATAAGTTTC TTTTAAANAACAACTTAAGTTTGTGATTAAATGTTTCGGTGCTTGAAGACTCATTTCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAACAGGACAATATGTTGAAGCAATGTTTTAGCGAACTCGTCATCAATCTCCTTTATTCTACCAGATGCACAAAGCACTCTTGTGCATGCTAAGTACGCCAGTTTCACAGATGAACGTTCATTTTGAGTGGACGGCTCTGAGGCAAAAATTTGAACACTCATGGATTCCGCTAGTTCTTTGGTTGAAGTTTCCGTTGGAAAATCCTTGAGGAAACGTATAAGACATTGCTCATAGCTGGACCTTGTAGACTCCTCAAATGACTTCAGACCTTTAACAAGCCTTTGCCTTGTATACGTGAAGTAAGTGGTTTTCACTTCATCCGTTTTACCACTTAGCAAAGTTACCAGCTTGTTAGAAGATTCTATTCTTTGTTTTTCATCTCGCGCTGATAATCCCCAAAACAGATCCAAAAAAGCACGGTC]
[-] EMBL CD115762 [ acccaaAGCAAAG TACCAGCTTGTTAGAAGATTCTATTCTTTGTTTTTCATCTCGCGCTGACAATCCCCAAAACAGATCCAAAAAAGCACGGTC]
consensusID : consensus_9114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence
[CTGTATTAACCCATCGATGAAGGTTTAACAGACTCATAGGTGTGGATTATGGGATGTCACTTTAGCCAGCTTATCCACATGCATAGGAAATCGTTAGGTCCAAATGCTCACCTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGCTTGCTAGATAAAATTAACTTGAAAGGTTCTTACAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAACGGCGGAATATCTAGCTTCTGAAGACGTTTCTGAAAGTGCAATCATATTTATGGATTTAGTACCTGAAAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGAGTTTGAAGACATTAGGTTTTGATAAGTTTCTTTTAAAAAACAACTTAAGTTTGTGATTAAATGTTTCGGTGCCTAATAATTGTATATTAACGACTCAAACAGATTACTTGAAGACTCATTTCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAACAGGACAATATGTTGAAGCAATGTTTTAGCGAACTCGTCATCAATCTGTACTTAGTGACGACAA]
[+] EMBL CD076997 [CTGTATTAACCCATCGATGAAGGTTTAACAGACTCATAGGTGTGGATTATGGGATGTCACTTTAGCCAGCTTATCCACATGCATAGGAAATCGTTAGGTCCAAATGCTCACCTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGCTTGCTAGATAAAATTAACTTGAAAGGTTCTTACAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAACGGCGGAATATCTAGCTTCTGAAGACGTTTCTGAAAGTGCAATCATATTTATGGATTTAGTACCTGAAAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGAGTTTGAAGACATTAGGTTTTGATAAGTTTCTTTTAAAAAACAACTTAAGTTTGTGATTAAATGTTTCGGTGCCTAATAATTGTATATTAACGACTCAAACAGATTACTTGAAGACTCATTTCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAACAGGACAATATGTTGAAGCAATGTTTTAGCGAACTCGTCATCAATCTGTACTTAGTGACGACAA]
consensusID : consensus_9114#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence
[AGTCAAGTAGTGGGTAGTTTAAAGCAATTGATTTCAACAGACGGTCTGGAGACATAGAAACCGTAGATTTCTGGAGATTTTCGCCAACATTCGTGGAGCCAATAATCTTATCCATCATCACTCTTAGTAAATGGGAGACTTGAGGGAAATAACCGTACTCGCAATCTGATGATTGCTTGCTGAAGCCCTCAAAAACATCACTAGATAAGACGAAATCAAACTTTTCCTTCCCATTACAAATAATGTGAACGACAATTTGCAAAAATCGAAAAGTATTTTTGACTTTATTGGCTTTAGAACATAAGGTCGCTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAACGGCGGAATATCTAGCTTCTGAAGACGTTTCTGANAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGAGTTTGAGACAT]
[+] EMBL CD194989 [AGTCAAGTAGTGGGTAGTTTAAAGCAATTGATTTCAACAGACGGTCTGGAGACATAGAAACCGTAGATTTCTGGAGATTTTCGCCAACATTCGTGGAGCCAATAATCTTATCCATCATCACTCTTAGTAAATGGGAGACTTGAGGGAAATAACCGTACTCGCAATCTGATGATTGCTTGCTGAAGCCCTCAAAAACATCACTAGATAAGACGAAATCAAACTTTTCCTTCCCATTACAAATAATGTGAACGACAATTTGCAAAAATCGAAAAGTATTTTTGACTTTATTGGCTTTAGAACATAAGGTCGCTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAACGGCGGAATATCTAGCTTCTGAAGACGTTTCTGANAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGAGTTTGAGACAT]
consensusID : consensus_9114#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence
[GACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAACGGCGGAATATCTAGCTTCTGAAAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGAGTTTGAAGACATTAGGTTTTGATAAGTTTCTTTTAAAAAACAACTTAAGTTTGTGATTAAATGTTTCGGTGCTTGAAGACTCATTTCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAA]
[-] EMBL CD154459 [GACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAACGGCGGAATATCTAGCTTCTGAAAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGAGTTTGAAGACATTAGGTTTTGATAAGTTTCTTTTAAAAAACAACTTAAGTTTGTGATTAAATGTTTCGGTGCTTGAAGACTCATTTCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9114#1 ------------------------------------------------------------
consensus_9114#3 ------------------------------------------------------------
consensus_9114#0 ------------------------------------------------------TANAAC 6
consensus_9114#2 AGTCAAGTAGTGGGTAGTTTAAAGCAATTGATTTCAACAGACGGTCTGGAGACATAGAAA 60
consensus_9114#1 ------------------------------------------------------------
consensus_9114#3 ------------------------------------------------------------
consensus_9114#0 GAGCATATGTCTGGAGATTTTCGCAACATTCGTGGAGCCAACTAATCTTATCCATCATCA 66
consensus_9114#2 CCGTAGATTTCTGGAGATTTTCGCCAACATTCGTGGAGCCAATAATCTTATCCATCATCA 120
consensus_9114#1 ------------------------------------------------------------
consensus_9114#3 ------------------------------------------------------------
consensus_9114#0 CTCTTAGTAAATGGGAGACTTGAGGGAAATAACCGTACTTGCAATCTGATAATTGCTTGC 126
consensus_9114#2 CTCTTAGTAAATGGGAGACTTGAGGGAAATAACCGTACTCGCAATCTGATGATTGCTTGC 180
consensus_9114#1 --------CTGTATTAACCCATCGATGAAGGTTTAACAGACTCATA------GGTGTGGA 46
consensus_9114#3 ------------------------------------------------------------
consensus_9114#0 TGAAGCCCTCAAAAACATCACTAGATAAGACGAAATCAAACTTTTCCTTCCCATTACAAA 186
consensus_9114#2 TGAAGCCCTCAAAAACATCACTAGATAAGACGAAATCAAACTTTTCCTTCCCATTACAAA 240
consensus_9114#1 TTATG-GGATGTCACTTTAGCCAGCTTATCCACATGCATAGGAAATCGTTAGGTCCAAAT 105
consensus_9114#3 ------------------------------------------------------------
consensus_9114#0 TAATGTGAACGACAATTT-GCAAAAATCGAAAAGTATCTTTGACTTTATTGGCTTTAGAA 245
consensus_9114#2 TAATGTGAACGACAATTT-GCAAAAATCGAAAAGTATTTTTGACTTTATTGGCTTTAGAA 299
consensus_9114#1 GCTCAC----CTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCA 161
consensus_9114#3 -----------------------------------------------------GACTTCA 7
consensus_9114#0 CATAAGGTCGCTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCA 305
consensus_9114#2 CATAAGGTCGCTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCA 359
*******
consensus_9114#1 TCGATTAACCGCATCACGATGGCATCGTGAGAATGCTTGCTAGATAAAATTAACTTGAAA 221
consensus_9114#3 TCGATTAACCGCATCACGATGGCATCGTGAGAATG------------------------- 42
consensus_9114#0 TCGATTAACCGCATCACGATGGCATCGTGAGAATG------------------------- 340
consensus_9114#2 TCGATTAACCGCATCACGATGGCATCGTGAGAATG------------------------- 394
***********************************
consensus_9114#1 GGTTCTTACAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAA 281
consensus_9114#3 ---------AAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAA 93
consensus_9114#0 ---------AAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAA 391
consensus_9114#2 ---------AAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAA 445
***************************************************
consensus_9114#1 CGGCGGAATATCTAGCTTCTGAAGACGTTTCTGAAAGTGCAATCATATTTATGGATTTAG 341
consensus_9114#3 CGGCGGAATATCTAGCTTCTGAA------------------------------------- 116
consensus_9114#0 CGGCGGAATATCTAGCTTCTGAAGACGTTTCTGAA------------------------- 426
consensus_9114#2 CGGCGGAATATCTAGCTTCTGAAGACGTTTCTGAN------------------------- 480
***********************
consensus_9114#1 TACCTGAAAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGA 401
consensus_9114#3 --------AGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGA 168
consensus_9114#0 --------AGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGA 478
consensus_9114#2 --------AGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGA 532
****************************************************
consensus_9114#1 GTTTGAAGACATTAGGTTTTGATAAGTTTCTTTTAAAAAACAACTTAAGTTTGTGATTAA 461
consensus_9114#3 GTTTGAAGACATTAGGTTTTGATAAGTTTCTTTTAAAAAACAACTTAAGTTTGTGATTAA 228
consensus_9114#0 GTTTGAAGACATTAGGTTTTGATAAGTTTCTTTTAAAAAACAACTTAAGTTTGTGATTAA 538
consensus_9114#2 GTTTGA-GACAT------------------------------------------------ 543
****** *****
consensus_9114#1 ATGTTTCGGTGCCTAATAATTGTATATTAACGACTCAAACAGATTACTTGAAGACTCATT 521
consensus_9114#3 ATGTTTCGGTGC-----------------------------------TTGAAGACTCATT 253
consensus_9114#0 ATGTTTCGGTGC-----------------------------------TTGAAGACTCATT 563
consensus_9114#2 ------------------------------------------------------------
consensus_9114#1 TCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAACAGGACAATA 581
consensus_9114#3 TCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAA---------- 303
consensus_9114#0 TCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAACAGGACAATA 623
consensus_9114#2 ------------------------------------------------------------
consensus_9114#1 TGTTGAAGCAATGTTTTAGCGAACTCGTCATCAATCTGTACTTAGTGACGACAA------ 635
consensus_9114#3 ------------------------------------------------------------
consensus_9114#0 TGTTGAAGCAATGTTTTAGCGAACTCGTCATCAATCTCCTTTATTCTACCAGATGCACAA 683
consensus_9114#2 ------------------------------------------------------------
consensus_9114#1 ------------------------------------------------------------
consensus_9114#3 ------------------------------------------------------------
consensus_9114#0 AGCACTCTTGTGCATGCTAAGTACGCCAGTTTCACAGATGAACGTTCATTTTGAGTGGAC 743
consensus_9114#2 ------------------------------------------------------------
consensus_9114#1 ------------------------------------------------------------
consensus_9114#3 ------------------------------------------------------------
consensus_9114#0 GGCTCTGAGGCAAAAATTTGAACACTCATGGATTCCGCTAGTTCTTTGGTTGAAGTTTCC 803
consensus_9114#2 ------------------------------------------------------------
consensus_9114#1 ------------------------------------------------------------
consensus_9114#3 ------------------------------------------------------------
consensus_9114#0 GTTGGAAAATCCTTGAGGAAACGTATAAGACATTGCTCATAGCTGGACCTTGTAGACTCC 863
consensus_9114#2 ------------------------------------------------------------
consensus_9114#1 ------------------------------------------------------------
consensus_9114#3 ------------------------------------------------------------
consensus_9114#0 TCAAATGACTTCAGACCTTTAACAAGCCTTTGCCTTGTATACGTGAAGTAAGTGGTTTTC 923
consensus_9114#2 ------------------------------------------------------------
consensus_9114#1 ------------------------------------------------------------
consensus_9114#3 ------------------------------------------------------------
consensus_9114#0 ACTTCATCCGTTTTACCACTTAGCAAAGTTACCAGCTTGTTAGAAGATTCTATTCTTTGT 983
consensus_9114#2 ------------------------------------------------------------
consensus_9114#1 --------------------------------------------------
consensus_9114#3 --------------------------------------------------
consensus_9114#0 TTTTCATCTCGCGCTGATAATCCCCAAAACAGATCCAAAAAAGCACGGTC 1033
consensus_9114#2 --------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||