cluster # 9118

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Schistosoma mansoni
cluster # 9118 cluster # 9118 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9118#0 length = 997 sequences # 7

consensus_9118#1 length = 574 sequences # 1

consensusID : consensus_9118#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 997
fasta sequence

                              [AACAGGCCANAATTTTGCACGAGGATACGCTACTCTCTTTAAAACACAATAAAATCTGAAAAGGCCATTACAAAAACAACTTTGTCTGACTCCACCACTCAAATTTTGGTTGTGGTATAGTGCTATTAATGCCCGAAACCCACTACCATATCAGTTAACTAGGTCGGTGTTCACCAACCTTTTAGAACTGAAAATTGACTAATATAAAGAACAGAAGCAAACGCGTAACTTTTCTTCTGTTATATTAAATATGAATTTGCAAAGACTGTGGATTTTTAATTTATGGAGGAACGTTAACCATATGTCTTCTCGTTATTCACATCCACATAAACTAAACTTTATTCCGTCAACAGCACTTACAAAGACAAAATATTTCTTTGGATTAACTGGTAAACTACAATATCCAAACAGAACCCTTCGTATTTCTGGTGAAAACTTATTCATAATCTGTGCGGAGTACCCCGTGTTTGAAGATTTTGTGCAACATCTTAAGCTCCCAGATACGTTTCAAACATGGTTCTCACTAACCATACTACAC-ATATGGAT-GTGCTA-CG-TGCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATGGATGGACAGGGCTCTTTGGGAAGATATGGGACACAGA-GTGCGTGCATTCAAAATCTTAACGAANAGCTCTAAGCAGATAAGAGTTTTTCGTGGGCAATATT-NTGGCAATAT-GGTCGGATATGATGAAGCTTTATTATCCTGCTCAGACTCACACTTGGCTGGTGCGCTGTGGAGCAATATATGGTTCTCTTGTCCAACAACTGCCTTTCAACAAATCGAAATATTGATTAAGTATGTCAGGAAGCAGTTAGAGCACTTAGAAAAAACTCCGTCAAATGTTTTTCTTGAAAGCGGTGCTCCAATGTTTTTACCATTAATGCAAGATGAATTAGATGCTTCCCTTGCTAAACAACGTTTGAGATGTTGTTTAACTTTTCCCAAACATTATAAATAAATA]

[+] EMBL CD079579             [AACAGGCCANAATTTTGCACGAGGATACGCTACTCTCTTTAAAACACAATAAAATCTGAAAAGGCCATTACAAAAACAACTTTGTCTGACTCCACCACTCAAATTTTGGTTGTGGTATAGTGCTATTAATGCCCGAAACCCACTACCATATCAGTTAACTAGGTCGGTGTTCACCAACCTTTTAGAACTGAAAATTGACTAATATAAAGAACAGAAGCAAACGCGTAACTTTTCTTCTGTTATATTAAATATGAATTTGCAAAGACTGTGGATTTTTAATTTATGGAGGAACGTTAACCATATGTCTTCTCGTTATTCACATCCACATAAACTAAACTTTATTCCGTCAACAGCACTTACAAAGACAAAATATTTCTTTGGATTAACTGGTAAACTACAATATCCAAACAGAACCCTTCGTATTTCTGGTGAAAACTTATTCATAATCTGTGCGGAGTACCCCGTGTTTGAAGATTTTGTGCAACATCTTAAGCTCCCAGATACGTTTCAAACATGGTTCTCACTAACCATACTACAC ATATGGAT GTGCTA CG TGCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATGGATGGACAGGGCTCTTTGGGAAGATATGGGACACAGA GTGCGTGCATTCAAAATCTTAACGAANAGCTCTAAGCAGATAAGAGTTTTTCGTGGGCAATATT NTGGCAATAT GGTCGGAT                                                                                                                                                                                                                                                                                      ]
[+] EMBL BF936505             [                                          AACACAATAAAATCTGAAAAGGCCATTACAAAAACAACTTTGTCTGACTCCACCACTCAAATTTTGGTTGTGGTATAGTGCTATTAATGCCCGAAACCCACTACCATATCAGTTAACTAGGTCGGTGTTCACCAACCTTTTAGAACTGAAAATTGACTAATATAAAGAACAGAAGCAAACGCGTAACTTTTCTTCTGTTATATTAAATATGAATTTGCAAAGACTGTGGATTTTTAATTTATGGAGGAACGTTAACCATATGTCTTCTCGTTATTCACATCCACATAAACTAAACTTTATTCCGTCAACAGCACTTACAAAGACAAAATATTTCTTTGGATTAACTGGTAAACTACAATATCCAAACAGAACCCTTCGTATTTCTGGTGAAAACTTATTCATAATCTGTGCGGAGTACCCCGTGTTTGAAGATTTTGTGCAACATCTTAAGCTCCCAAATACGTTTCAAACATGGTTCTCACTAACCATACTACACAATATGGATGGTGCTACCGTTGCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATGGATGGACAGGGCTCTTTGGGAAGATATGGGACACAGAGGTGCGTGCATTCAAAATCTTAACGAA                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD083622             [                                                        TGAAAAGGCCATTACAAAAACAAC TTGTCTGACTCCACCACTCAAATTTTGGTTGTGGTATAGTGCTATTAATGCCCGAAACCCACTACCATATCAGTTAACTAGGTCGGTGTTCACCAACCTTTTAGAACTGAAAATTGACTAATATAAAGAACAGAAGCAAACGCGTAACTTTTCTTCTGTTATATTAAATATGAATTTGCAAAGACTGTGGATTTTTAATTTATGGAGGAACGTTAACCATATGTCTTCTCGTTATTCACATCCACATAAACTAAACTTTATTCCGTCAACAGCACTTACAAAGACAAAATATTTCTTTGGATTAACTGGTAAACTACAATATCCAAACAGAACCCTTCGTATTTCTGGTGAAAACTTATTCATAATCTGTGCGGAGTACCCCGTGTTTGAAGATTTTGTGCAACATCTTAAGCTCCCAGATACGTTTCAAACATGGTTCTCACTAACCATACTACAC ATATGGAT GTGCTA CG TGCGTCTACGCCAAGAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AI976897             [                                                                                     CTGACTCCACCACTCAAATTTTGGTTGTGGTATAGTGCTATTAATGCCCGAAACCCACTACCATATCAGTTAACTAGGTCGGTGTTCACCAACCTTTTAGAACTGAAAATTGACTAATATAAAGAACAGAAGCAAACGCGTAACTTTTCTTCTGTTATATTAAATATGAATTTGCAAAGACTGTGGATTTTTAATTTATGGAGGAACGTTAACCATATGTCTTCTCGTTATTCACATCCACATAAACTAAACTTTATTCCGTCAACAGCACTTACAAAGACAAAATATTTCTTTGGATTAACTGGTAAACTACAATATCCAAACAGAACCCTTCGTATTTCTGGTGAAAACTTATTCATAATCTGTGCGGAGTACCCCGTGTTTGAAGATTTTGTGCAACATCTTAAGCTCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD080532             [                                                                                                                                          CCCACTACCATATCAGTTAACTAGGTCGGTGTTCACCAACCTTTTAGAACTGAAAATTGACTAATATAAAGAACAGAAGCAAACGCGTAACTTTTCTTCTGTTATATTAAATATGAATTTGCAAAGACTGTGGATTTTTAATTTATGGAGGAACGTTAACCATATGTCTTCTCGTTATTCACATCCACATAAACTAAACTTTATTCCGTCAACAGCACTTACAAAGACAAAATATTTCTTTGGATTAACTGGTAAACTACAATATCCAAACAGAACCCTTCGTATTTCTGGTGAAAACTTATTCATAATCTGTGCGGAGTACCCCGTGTTTGAAGATTTTGTGCAACATCTTAAGCTCCCAGATACGTTTCAAACATGGTTCTCACTAACCATACTACAC ATATGGAT GTGCTA CG TGCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATGGATGGACAGGGCTCTTTGGGAAGATATGGGACACAGA GTGCGTGCATTCAAAATCTTAACGAANAGCTCTAAGCAGATAAGAGTTTTTCGTGGGCAATATTNNTGGC ATATGGGTC GATATGAT                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD073842             [                                                                                                                                                                                                                                                                                                                                                       CCGTCAACAGCACTTACAAAGACAAAATATTTCTTTGGATTAACTGGTAAACTACAATATCCAAACAGAACCCTTCGTATTTCTGGTGAAAACTTATTCATAATCTGTGCGGAGTACCCCGTGTTTGAAGATTTTGTGCAACATCTTAAGCTCCCAGATACGTTTCAAACATGGTTCTCACTAACCATACTACAC ATATGGAT GTGCTA CG TGCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATGGATGGACAGGGCTCTTTGGGAAGATATGGGACACAGA GTGCGTGCATTCAAAATCTTAACGAAAAGCTCTAAGCAGATAAGAGTTTTTCGTGGGCAATATT TTGGCAATAT GGTCGGATATGATGAAGCTTTATTATCCTGCTCAGACTCACACTTGGCTGGTGCGCTGTGGAGCAATATATGGTTCTCTTGTCCAACAACTGCCTTTCAACAAATCGAAATATTGATTAAGTATGTCAGGAAGCAGTTAGAGCACTTAGAAAAAACTCCGTCAAATGTTTTTCTTGAAAGCGGTGCTCCAATGTTTTTACCATTAATGCAAGATGAATTAGATGCTTCCCTTGCTAAACAACGTTTGAGATGTTGTTTAACTTTTCCCAAACATTATAAATAAATA]
[+] EMBL CD138622             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTCCCAGATACGTTTCAAACATGGTTCTCACTAACCATACTACAC ATATGGAT GTGCTA CG TGCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATGGATGGACAGGGCTCTTTGGGAAGATATGGGACACAGA GTGCGTGCATTCAAAATCTTAACGAAAAGCTCTAAGCAGATAAGAGTTTTTCGTGGGCAATATT TTGGCAATAT GGTCGGATATGATG                                                                                                                                                                                                                                                                                ]




>consensus_9118#0
AACAGGCCANAATTTTGCACGAGGATACGCTACTCTCTTTAAAACACAATAAAATCTGAA
AAGGCCATTACAAAAACAACTTTGTCTGACTCCACCACTCAAATTTTGGTTGTGGTATAG
TGCTATTAATGCCCGAAACCCACTACCATATCAGTTAACTAGGTCGGTGTTCACCAACCT
TTTAGAACTGAAAATTGACTAATATAAAGAACAGAAGCAAACGCGTAACTTTTCTTCTGT
TATATTAAATATGAATTTGCAAAGACTGTGGATTTTTAATTTATGGAGGAACGTTAACCA
TATGTCTTCTCGTTATTCACATCCACATAAACTAAACTTTATTCCGTCAACAGCACTTAC
AAAGACAAAATATTTCTTTGGATTAACTGGTAAACTACAATATCCAAACAGAACCCTTCG
TATTTCTGGTGAAAACTTATTCATAATCTGTGCGGAGTACCCCGTGTTTGAAGATTTTGT
GCAACATCTTAAGCTCCCAGATACGTTTCAAACATGGTTCTCACTAACCATACTACACAT
ATGGATGTGCTACGTGCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATG
GATGGACAGGGCTCTTTGGGAAGATATGGGACACAGAGTGCGTGCATTCAAAATCTTAAC
GAANAGCTCTAAGCAGATAAGAGTTTTTCGTGGGCAATATTNTGGCAATATGGTCGGATA
TGATGAAGCTTTATTATCCTGCTCAGACTCACACTTGGCTGGTGCGCTGTGGAGCAATAT
ATGGTTCTCTTGTCCAACAACTGCCTTTCAACAAATCGAAATATTGATTAAGTATGTCAG
GAAGCAGTTAGAGCACTTAGAAAAAACTCCGTCAAATGTTTTTCTTGAAAGCGGTGCTCC
AATGTTTTTACCATTAATGCAAGATGAATTAGATGCTTCCCTTGCTAAACAACGTTTGAG
ATGTTGTTTAACTTTTCCCAAACATTATAAATAAATA

consensusID : consensus_9118#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 574
fasta sequence

                              [GCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATGGATGGACAGGGTATTGTCAGTATTACCTTTAACCAGATTTTCTTAGGCTCTTTGGGAAGATATGGGACACAGAGTGCGTGCATTCAAAATCTTAACGAAAAGCTCTAAGCAGATAAGGGTTTTTCGTGGGCAATATTTTGGCAATATGGTCGGATATGATGAAGCTTTATTATCCTGCTCAGACTCACACTTGGCTGGTGCGCTGTGGAGCAATATATGGTTCTCTTGTCCAACAACTGCCTTTCAACAAATCGAAATATTGATTAAGTATGTCAGGAAGCAGTTAGAGCACTTAGAAAAAACTCCGTCAAATGTTTTTCATGAAAGCGGTGCTCCAATGTTTTTACCATTAATGCAAGATGAATTAGATGCTTCCCTTGCTAAACAACGTTTGAGATATTGTTTAACTTTTCCCGAGCATTATAAATAAATAAAACACTTCAAAATGTTTATTATCTTTCTATGTTAATATTATTTATGTACCGTGTTCGGTATTCACAAAGGAATATATATTTCACTTAAAGATTAT]

[+] EMBL CD124991             [GCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATGGATGGACAGGGTATTGTCAGTATTACCTTTAACCAGATTTTCTTAGGCTCTTTGGGAAGATATGGGACACAGAGTGCGTGCATTCAAAATCTTAACGAAAAGCTCTAAGCAGATAAGGGTTTTTCGTGGGCAATATTTTGGCAATATGGTCGGATATGATGAAGCTTTATTATCCTGCTCAGACTCACACTTGGCTGGTGCGCTGTGGAGCAATATATGGTTCTCTTGTCCAACAACTGCCTTTCAACAAATCGAAATATTGATTAAGTATGTCAGGAAGCAGTTAGAGCACTTAGAAAAAACTCCGTCAAATGTTTTTCATGAAAGCGGTGCTCCAATGTTTTTACCATTAATGCAAGATGAATTAGATGCTTCCCTTGCTAAACAACGTTTGAGATATTGTTTAACTTTTCCCGAGCATTATAAATAAATAAAACACTTCAAAATGTTTATTATCTTTCTATGTTAATATTATTTATGTACCGTGTTCGGTATTCACAAAGGAATATATATTTCACTTAAAGATTAT]




>consensus_9118#1
GCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATGGATGGACAGGGTATT
GTCAGTATTACCTTTAACCAGATTTTCTTAGGCTCTTTGGGAAGATATGGGACACAGAGT
GCGTGCATTCAAAATCTTAACGAAAAGCTCTAAGCAGATAAGGGTTTTTCGTGGGCAATA
TTTTGGCAATATGGTCGGATATGATGAAGCTTTATTATCCTGCTCAGACTCACACTTGGC
TGGTGCGCTGTGGAGCAATATATGGTTCTCTTGTCCAACAACTGCCTTTCAACAAATCGA
AATATTGATTAAGTATGTCAGGAAGCAGTTAGAGCACTTAGAAAAAACTCCGTCAAATGT
TTTTCATGAAAGCGGTGCTCCAATGTTTTTACCATTAATGCAAGATGAATTAGATGCTTC
CCTTGCTAAACAACGTTTGAGATATTGTTTAACTTTTCCCGAGCATTATAAATAAATAAA
ACACTTCAAAATGTTTATTATCTTTCTATGTTAATATTATTTATGTACCGTGTTCGGTAT
TCACAAAGGAATATATATTTCACTTAAAGATTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9118#0      AACAGGCCANAATTTTGCACGAGGATACGCTACTCTCTTTAAAACACAATAAAATCTGAA 60
consensus_9118#1      ------------------------------------------------------------
                                                                                  

consensus_9118#0      AAGGCCATTACAAAAACAACTTTGTCTGACTCCACCACTCAAATTTTGGTTGTGGTATAG 120
consensus_9118#1      ------------------------------------------------------------
                                                                                  

consensus_9118#0      TGCTATTAATGCCCGAAACCCACTACCATATCAGTTAACTAGGTCGGTGTTCACCAACCT 180
consensus_9118#1      ------------------------------------------------------------
                                                                                  

consensus_9118#0      TTTAGAACTGAAAATTGACTAATATAAAGAACAGAAGCAAACGCGTAACTTTTCTTCTGT 240
consensus_9118#1      ------------------------------------------------------------
                                                                                  

consensus_9118#0      TATATTAAATATGAATTTGCAAAGACTGTGGATTTTTAATTTATGGAGGAACGTTAACCA 300
consensus_9118#1      ------------------------------------------------------------
                                                                                  

consensus_9118#0      TATGTCTTCTCGTTATTCACATCCACATAAACTAAACTTTATTCCGTCAACAGCACTTAC 360
consensus_9118#1      ------------------------------------------------------------
                                                                                  

consensus_9118#0      AAAGACAAAATATTTCTTTGGATTAACTGGTAAACTACAATATCCAAACAGAACCCTTCG 420
consensus_9118#1      ------------------------------------------------------------
                                                                                  

consensus_9118#0      TATTTCTGGTGAAAACTTATTCATAATCTGTGCGGAGTACCCCGTGTTTGAAGATTTTGT 480
consensus_9118#1      ------------------------------------------------------------
                                                                                  

consensus_9118#0      GCAACATCTTAAGCTCCCAGATACGTTTCAAACATGGTTCTCACTAACCATACTACACAT 540
consensus_9118#1      ------------------------------------------------------------
                                                                                  

consensus_9118#0      ATGGATGTGCTACGTGCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATG 600
consensus_9118#1      ---------------GCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATG 45
                                     *********************************************

consensus_9118#0      GATGGACAGGG------------------------------------CTCTTTGGGAAGA 624
consensus_9118#1      GATGGACAGGGTATTGTCAGTATTACCTTTAACCAGATTTTCTTAGGCTCTTTGGGAAGA 105
                      ***********                                    *************

consensus_9118#0      TATGGGACACAGAGTGCGTGCATTCAAAATCTTAACGAANAGCTCTAAGCAGATAAGAGT 684
consensus_9118#1      TATGGGACACAGAGTGCGTGCATTCAAAATCTTAACGAAAAGCTCTAAGCAGATAAGGGT 165
                      *************************************** ***************** **

consensus_9118#0      TTTTCGTGGGCAATATTNTGGCAATATGGTCGGATATGATGAAGCTTTATTATCCTGCTC 744
consensus_9118#1      TTTTCGTGGGCAATATTTTGGCAATATGGTCGGATATGATGAAGCTTTATTATCCTGCTC 225
                      ***************** ******************************************

consensus_9118#0      AGACTCACACTTGGCTGGTGCGCTGTGGAGCAATATATGGTTCTCTTGTCCAACAACTGC 804
consensus_9118#1      AGACTCACACTTGGCTGGTGCGCTGTGGAGCAATATATGGTTCTCTTGTCCAACAACTGC 285
                      ************************************************************

consensus_9118#0      CTTTCAACAAATCGAAATATTGATTAAGTATGTCAGGAAGCAGTTAGAGCACTTAGAAAA 864
consensus_9118#1      CTTTCAACAAATCGAAATATTGATTAAGTATGTCAGGAAGCAGTTAGAGCACTTAGAAAA 345
                      ************************************************************

consensus_9118#0      AACTCCGTCAAATGTTTTTCTTGAAAGCGGTGCTCCAATGTTTTTACCATTAATGCAAGA 924
consensus_9118#1      AACTCCGTCAAATGTTTTTCATGAAAGCGGTGCTCCAATGTTTTTACCATTAATGCAAGA 405
                      ******************** ***************************************

consensus_9118#0      TGAATTAGATGCTTCCCTTGCTAAACAACGTTTGAGATGTTGTTTAACTTTTCCCAAACA 984
consensus_9118#1      TGAATTAGATGCTTCCCTTGCTAAACAACGTTTGAGATATTGTTTAACTTTTCCCGAGCA 465
                      ************************************** **************** * **

consensus_9118#0      TTATAAATAAATA----------------------------------------------- 997
consensus_9118#1      TTATAAATAAATAAAACACTTCAAAATGTTTATTATCTTTCTATGTTAATATTATTTATG 525
                      *************                                               

consensus_9118#0      -------------------------------------------------
consensus_9118#1      TACCGTGTTCGGTATTCACAAAGGAATATATATTTCACTTAAAGATTAT 574