cluster # 9119

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Schistosoma mansoni
cluster # 9119 cluster # 9119 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9119#0 length = 675 sequences # 7

consensus_9119#1 length = 275 sequences # 1

consensusID : consensus_9119#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 675
fasta sequence

                              [TATATTGTCAACGAAAATAAATCAATTGAATTTCGATATGTTACTTCAGCTAGTTCTTCTTCGCTTACTCCTTTCACAGCAGAAACAACTTCTAGAACTTGAACAAGGTTAGCGGGTTCATTGCGTCCTTTGACCATGTGGGATTCATCCCATGAATTATGCTTACGATAAGTGTGATGTGTCTTAACAAAATGATATCCTGCATGAGTTCTTCTAATATCACACCAAGGAGCATCTGTTTCTAATAAAAGCCGATCAAGTGGAATTTTCTGCACAACTTCCAAATTACTTTGGTTCTTCAGACTGCAACCGTTGACACCAATATACAATCCCATATCAGTGAAACATTTGACCATTTCGTCTGTACCGTCAAATGAATGTACAACACCTCGAAAAGGCTTGTTTTGAAAATATTTATGTTCAGCATCTTTGATCATTTTCAGAAAATCTTCATGTGCAGCTCGACAATGCAAAAACAGAGGTAGATTAACATCACTAGCCAACTTAAGTTGGGTGTCAAAATATTCTTTCTGGATATCTTTTGGGCAAAACTCTTCACGGTCATAATCGAGACCACATTCACCAACAGCTACTACTTTTTTCGTCGTGAGAATTAAGTTTTCCAGTTTATTCAGGTAGTTATCGGGATCCTCGTTGAACTCCAAACACCCCGTG]

[+] EMBL CD077080             [TATATTGTCAACGAAAATAAATCAATTGAATTTCGATATGTTACTTCAGCTAGTTCTTCTTCGCTTACTCCTTTCACAGCAGAAACAACTTCTAGAACTTGAACAAGGTTAGCGGGTTCATTGCGTCCTTTGACCATGTGGGATTCATCCCATGAATTATGCTTACGATAAGTGTGATGTGTCTTAACAAAATGATATCCTGCATGAGTTCTTCTAATATCACACCAAGGAGCATCTGTTTCTAATAAAAGCCGATCAAGTGGAATTTTCTGCACAACTTCCAAATTACTTTGGTTCTTCAGACTGCAACCGTTGACACCAATATACAATCCCATATCAGTGAAACATTTGACCATTTCGTCTGTACCGTCAAATGAATGTACAACACCTCGAAAAGGCTTGTTTTGAAAATATTTATGTTCAGCATCTTTGATCATTTTCAGAAAATCTTCATGTGCAGCTCGACAATGCAAAAACAGAGGTAGATTAACATCACTAGCCAACTTAAGTTGGGTGTCAAAATATTCTTTCTGGATATCTTTTGGGCAAAACTCTTCACGGTCATAATCGAGACCACATTCACCAACAGCTACTACTTTTTTCGTCGTGAGAATTAAGTTTTCC                                                   ]
[-] EMBL CD137904             [                                                                                                                                   GACCATGTGGGATTCATCCCATGAATTATGCTTACGATAAGTGTGATGTGTCTTAACAAAATGATATCNTGCATGAGTTCTTCTAATATCACACCAAGGAGCATCTGTTTCTAATAAAAGCCGATCAAGTGGAATTTTCTGCACAACTTCCAAATTACTTTGGTTCTTCAGACTGCAACCGTTGACACCAATATACAATCCCATATCAGTGAAACATTTGACCATTTTGTCTGTACCGTCAAATGAATGTACAACACCTCGAAAAGGCTTGTTTTGAAAATATTTATGTTCAGCATCTTTGATCATTTTCAGAAAATCTTCATGCGCAGCTCGACAATGCAAAAACAGAGGTAGATTAACATCACTAGCCAACTTAAGTTGGGTGTCAAAATATTCTTTCTGGATATCTTTTGGGCAAAACTCTTCACGGTCATAATCGAGACCACATTCACCAACAGCTACTACTTTTTTCGTCGTGAGAATTAAGTTTTCCAGTTTATTCAGGTAGTTATCGGGATCCTCGTTGAACTCCAAACA       ]
[-] EMBL CD090846             [                                                                                                                                   GACCATGTGGGATTCATCCCATGAATTATGCTANCGATAAGTGTGATGTGTCTTAACANAATGATATCNTGCATGAGTTCTTCTAATATCACACCAAGGAGCATCTGTTTCTAATAAAAGCCGATCAAGTGGAATTTTCTGCACAACTTCCAAATTACTTTGGTTCTTCGGACTGCAACCGTTGACACCAATATACAATCCCATATCAGTGAAACATTTGACCATTTCGTCTGTACCGTCAAATGAATGTACAACACCTCGAAAAGGCTTGTTTTGAAAATATTTATGTTCAGCATCTTTGATCATTTTCAGAAAATCTTCATGTGCAGCTCGACAATGCAAAAACAGAGGTAGATTAACATCACTAGCCAACTTAAGTTGGGTGTCAAAATATTCTTTCTGGATATCTTTTGGGCAAAACT     CGGTCATAATCGAGACCACATTCACCAACAGCTACTACTTTTTTCGTCGTGAGAATTAAGTTTTCCAGTTTATTCAGGTTGTTATCGGGATCCTCGTAGAACTCCAAACA       ]
[-] EMBL CD137841             [                                                                                                                                                                                               ATGATATCCGGCATGAGTTCTTTTAATATCACACCAAGGAGCATCTGTTTTTAATAAAAGCCGATCAAGTGGAATTTTCTGCACAACTTCCAAATTACTTTGGTTCTTCAGACTGCAACCGTTGACACCAATATACAATCCCATATCAGTGAAACATTTGACCATTTCGTCTGTACCGTCAAATGAATGTACAACACCTCGAAAAGGCTTGTTTTGAAAATATTTATGTTCAGCATCTTTGATCATTTTCAGAAAATCTTCATGTGCAGCTCGACAATGCAAAAACAGAGGTAGATTAACATCACTAGCCAACTTAAGTTGGGTGTCAAAATATTCTTTCTGGATATCTTTTGGGCAAAACTCTTCACGGTCATAATCGAGACCACATTCACCAACAGCTACTACTTTTTTCGTCGTGAGAATTAAGTTTTCCAGTTTATTCAGGTAGTTATCGGGATCCTCGTTGAACTCCAAACA       ]
[-] EMBL CD137698             [                                                                                                                                                                                                                    TCTAATATCACACCAAGGAGCATCTGTGTCTAATAAAAGCCGATCAAGTGGAATTTTCTGCACAACTTCCAAATTACTTTGGTTCTTCAGACTGCAACCGTTGACACCAATATACAATCCCATATCAGTGAAACATTTGACCATTTCGTCTGTACCGTCAAATGAATGCACAACACCTCGAAAAGGCTTGTTTTGAAAATGTTTATGTTCAGCATCTTCGATCATTTTCAGAAAATCTTCATGTGCAGCTCGACAGTGCAAAAACAGAGGTAGATTAACATCACTAGCCAACTTAAGCTGGGTGTCAAAATATTCTTTCTGGATATCTTTTGGGCAAAACTCTTCACGGTCATAATCGAGACCACATTCACCAACAGCTACTACTTTTTTCGTCGTGAGAATTAAGTTTTCCAG TTATTCAGGTAGTTATCGGGATCCTCGTTGAACTCCAAACA       ]
[-] EMBL CD121213             [                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATCTTCATGTGCAGCTCGACAATGCAAAAACAGAGGTAGATTAACATCACTAGCCAACTTAAGTTGGGTGTCAAAATATTCTTTCTGGATATCTTTTGGGCAAAACTCTTCACGGTCATAATCGAGACCACATTCACCAACAGCTACTACTTTTTTCGTCGTGAGAATTAAGTTTTCCAGTTTATTCAGGTAGTTATCGG                             ]
[-] EMBL CD090845             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TCGACAATGCAAAAACAGAGGTAGATTAACATCACTAGCCAACTTAAGTTGGGTGTCAAAATATTCTTTCTGGATATCTTTTGGGCAAAACT     CGGTCATAATCGAGACCACATTCACCAACAGCTACTACTTTTTTCGTCGTGAGAATTAAGTTTTCCAGTTTATTCAGGTTGTTATCGGGATCCTCGTAGAATTTCCTGGGCCCCGTG]




>consensus_9119#0
TATATTGTCAACGAAAATAAATCAATTGAATTTCGATATGTTACTTCAGCTAGTTCTTCT
TCGCTTACTCCTTTCACAGCAGAAACAACTTCTAGAACTTGAACAAGGTTAGCGGGTTCA
TTGCGTCCTTTGACCATGTGGGATTCATCCCATGAATTATGCTTACGATAAGTGTGATGT
GTCTTAACAAAATGATATCCTGCATGAGTTCTTCTAATATCACACCAAGGAGCATCTGTT
TCTAATAAAAGCCGATCAAGTGGAATTTTCTGCACAACTTCCAAATTACTTTGGTTCTTC
AGACTGCAACCGTTGACACCAATATACAATCCCATATCAGTGAAACATTTGACCATTTCG
TCTGTACCGTCAAATGAATGTACAACACCTCGAAAAGGCTTGTTTTGAAAATATTTATGT
TCAGCATCTTTGATCATTTTCAGAAAATCTTCATGTGCAGCTCGACAATGCAAAAACAGA
GGTAGATTAACATCACTAGCCAACTTAAGTTGGGTGTCAAAATATTCTTTCTGGATATCT
TTTGGGCAAAACTCTTCACGGTCATAATCGAGACCACATTCACCAACAGCTACTACTTTT
TTCGTCGTGAGAATTAAGTTTTCCAGTTTATTCAGGTAGTTATCGGGATCCTCGTTGAAC
TCCAAACACCCCGTG

consensusID : consensus_9119#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 275
fasta sequence

                              [TTCTAGAACTTGAACAAGGTTAGCGGGTTCATTGCGTCCTTTGACCATGTGGGATTCATCCCATGAATTATGCTTACGATAAGTGTGATGTGTCTTAACAAAATGATATCCTAGGACGGGAAAAAATGAGATCAGATCTATATTACCTGCATGAGTTCTTCTAATATCACACCAAGGAGCATCTGTTTCTAATAAAAGCCGATCAAGTGGAATTTTCTGCACAACTTCCNAATACTTTGGTTCTTCAGACTGCAACCGTTGACACCAATATACAA]

[+] EMBL CD144192             [TTCTAGAACTTGAACAAGGTTAGCGGGTTCATTGCGTCCTTTGACCATGTGGGATTCATCCCATGAATTATGCTTACGATAAGTGTGATGTGTCTTAACAAAATGATATCCTAGGACGGGAAAAAATGAGATCAGATCTATATTACCTGCATGAGTTCTTCTAATATCACACCAAGGAGCATCTGTTTCTAATAAAAGCCGATCAAGTGGAATTTTCTGCACAACTTCCNAATACTTTGGTTCTTCAGACTGCAACCGTTGACACCAATATACAA]




>consensus_9119#1
TTCTAGAACTTGAACAAGGTTAGCGGGTTCATTGCGTCCTTTGACCATGTGGGATTCATC
CCATGAATTATGCTTACGATAAGTGTGATGTGTCTTAACAAAATGATATCCTAGGACGGG
AAAAAATGAGATCAGATCTATATTACCTGCATGAGTTCTTCTAATATCACACCAAGGAGC
ATCTGTTTCTAATAAAAGCCGATCAAGTGGAATTTTCTGCACAACTTCCNAATACTTTGG
TTCTTCAGACTGCAACCGTTGACACCAATATACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9119#0      TATATTGTCAACGAAAATAAATCAATTGAATTTCGATATGTTACTTCAGCTAGTTCTTCT 60
consensus_9119#1      ------------------------------------------------------------
                                                                                  

consensus_9119#0      TCGCTTACTCCTTTCACAGCAGAAACAACTTCTAGAACTTGAACAAGGTTAGCGGGTTCA 120
consensus_9119#1      -----------------------------TTCTAGAACTTGAACAAGGTTAGCGGGTTCA 31
                                                   *******************************

consensus_9119#0      TTGCGTCCTTTGACCATGTGGGATTCATCCCATGAATTATGCTTACGATAAGTGTGATGT 180
consensus_9119#1      TTGCGTCCTTTGACCATGTGGGATTCATCCCATGAATTATGCTTACGATAAGTGTGATGT 91
                      ************************************************************

consensus_9119#0      GTCTTAACAAAATGATATCCT------------------------------------GCA 204
consensus_9119#1      GTCTTAACAAAATGATATCCTAGGACGGGAAAAAATGAGATCAGATCTATATTACCTGCA 151
                      *********************                                    ***

consensus_9119#0      TGAGTTCTTCTAATATCACACCAAGGAGCATCTGTTTCTAATAAAAGCCGATCAAGTGGA 264
consensus_9119#1      TGAGTTCTTCTAATATCACACCAAGGAGCATCTGTTTCTAATAAAAGCCGATCAAGTGGA 211
                      ************************************************************

consensus_9119#0      ATTTTCTGCACAACTTCCAAATTACTTTGGTTCTTCAGACTGCAACCGTTGACACCAATA 324
consensus_9119#1      ATTTTCTGCACAACTTCCNAAT-ACTTTGGTTCTTCAGACTGCAACCGTTGACACCAATA 270
                      ****************** *** *************************************

consensus_9119#0      TACAATCCCATATCAGTGAAACATTTGACCATTTCGTCTGTACCGTCAAATGAATGTACA 384
consensus_9119#1      TACAA------------------------------------------------------- 275
                      *****                                                       

consensus_9119#0      ACACCTCGAAAAGGCTTGTTTTGAAAATATTTATGTTCAGCATCTTTGATCATTTTCAGA 444
consensus_9119#1      ------------------------------------------------------------
                                                                                  

consensus_9119#0      AAATCTTCATGTGCAGCTCGACAATGCAAAAACAGAGGTAGATTAACATCACTAGCCAAC 504
consensus_9119#1      ------------------------------------------------------------
                                                                                  

consensus_9119#0      TTAAGTTGGGTGTCAAAATATTCTTTCTGGATATCTTTTGGGCAAAACTCTTCACGGTCA 564
consensus_9119#1      ------------------------------------------------------------
                                                                                  

consensus_9119#0      TAATCGAGACCACATTCACCAACAGCTACTACTTTTTTCGTCGTGAGAATTAAGTTTTCC 624
consensus_9119#1      ------------------------------------------------------------
                                                                                  

consensus_9119#0      AGTTTATTCAGGTAGTTATCGGGATCCTCGTTGAACTCCAAACACCCCGTG 675
consensus_9119#1      ---------------------------------------------------