These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 802 fasta sequence [CTCCAGGCCAAAAATTCGGCACGAGGAGCATTATTACAAGATGTTTGCTTCGAACTTCTTAACCTTCTCAAGGGACAAGACGTTAGTGGCTATTTTCTTTATCCACTACCACACCTCAAACCTTCATGTCCATTTGGATTACTGGATATGGAAAAACAACTTTTCCAGAAATATTACAAAAGCCTGTCTGAGTTTCAAAAAGATGTTTCTGGACTCCTCAATAGCGCTCTTCAATATTATCAAATTGAATCAATGGCTCACAATGAAGCGCAACGTTTGCTAAATCTAACTACTGATTGGTTTAATTCATTGAATGCAAATTATGTCACTATTTTGAATCGTCCACCAGATAGTGGAGTGACAGTTGATAGAAACTTGCAAGTCAAAACATCAGATAGTAATGACATATCCAGGGAAACTTATTTAAACATTTTAAATCCAGATAATAATGGTATTATCAGTGAAACAGAACGAGTTCAAAGTATTGGGGACGAGGTTTGTATATATCTTATTAGCTTTTCCTTTTGTTACCACTGATTTAAGAGTAGGATATAACGATACAAATTTGAATAGCTCTTCGATTTGAACCTTAGTCATAGTTAAATACTTTTTTTATCAATGAGTTAGGCTTATTTGTGTGTCTTATTTATTCAATAGTTNTAAAGCACTTTGATTANGCCACTCAACCAATCAGCGCTAGCGAATAATTGGAGAAGAATCTAGAATCTTCTGGTGT-AAGTTATAAATAT-AT-ACG-TTTTATTA-TGTGA-TCACTACCA-TCTACCTGG--TTTTTGG-ATACA-TTACG] [+] EMBL CD079513 [CTCCAGGCCAAAAATTCGGCACGAGGAGCATTATTACAAGATGTTTGCTTCGAACTTCTTAACCTTCTCAAGGGACAAGACGTTAGTGGCTATTTTCTTTATCCACTACCACACCTCAAACCTTCATGTCCATTTGGATTACTGGATATGGAAAAACAACTTTTCCAGAAATATTACAAAAGCCTGTCTGAGTTTCAAAAAGATGTTTCTGGACTCCTCAATAGCGCTCTTCAATATTATCAAATTGAATCAATGGCTCACAATGAAGCGCAACGTTTGCTAAATCTAACTACTGATTGGTTTAATTCATTGAATGCAAATTATGTCACTATTTTGAATCGTCCACCAGATAGTGGAGTGACAGTTGATAGAAACTTGCAAGTCAAAACATCAGATAGTAATGACATATCCAGGGAAACTTATTTAAACATTTTAAATCCAGATAATAATGGTATTATCAGTGAAACAGAACGAGTTCAAAGTATTGGGGACGAGGTTTGTATATATCTTATTAGCTTTTCCTTTTGTTACCACTGATTTAAGAGTAGGATATAACGATACAAATTTGAATAGCTCTTCGATTTGAACCTTAGTCATAGTTAAATACTTTTTTTATCAATGAGTTAGGCTTATTTGTGTGTCTTATTTATTCAATAGTTNTAAAGCACTTTGATTANGCCACTCAACCAATCAGCGCTAGCGAATAATTGGAGAAGAATCTAGAATCTTCTGGTGT AAGTTATAAATAT AT ACG TTTTATTA TGTGA TCACTACCA TCTACCTGG TTTTTGG ATACA TTA ] [-] EMBL CD073781 [ ATTTGGATTACTGGATATGGAAAAACAACTTTTCCAGAAATATTACAAAAGCCTGTCTGAGTTTCAAAAAGATGTTTCTGGACTCCTCAATAGCGCTCTTCAATATTATCAAATTGAATCAATGGCTCACAATGAAGCGCAACGTTTGCTAAATCTAACTACTGATTGGTTTAATTCATTGAATGCAAATTATGTCACTATTTTGAATCGTCCACCAGATAGTGGAGTGACAGTTGATAGAAACTTGCAAGTCAAAACATCAGATAGTAATGACATATCCAGGGAAACTTATTTAAACATTTTAAATCCAGATAATAATGGTATTATCAGTGAAACAGAACGAGTTCAAAGTATTGGGGACGAGGTTTGTATATATCTTATTAGCTTTTCCTTTTGTTACCACTGATTTAAGAGTAGGATATAACGATACAAATTTGAATAGCTCTTCGATTTGAACCTTAGTCATAGTTAAATACTTTTTTTATCAATGAGTTAGGCTTATTTGTGTGTCTTATTTATTCAATAGTTTTAAAGCACTTTGATTAGGCCACTCAACCAATCAGCGCTAGCGAATAATTGGAGAAGAATCTAGAATCTTCTGGTGTAAAGTTATAAATATAATAACGTTTTTATTATTGTGATTCACTGCCATTCTACCTGGGTTTTTTGGAATACAGTTACG] consensusID : consensus_9121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 703 fasta sequence [TGACAGTTGATAGAAACTTGCAAGTCAAAACATCAGATAGTAATGACATATCCAGGGAAACTTATTTAAACATTTTAAATCCAGATAATAATGGTATTATCAGTGAAACAGAACGAGTTCAAAGTATTGGGGACGAGGCAGGCCACTTGTATTCAGGTTCGTATTTACTTCCTAATGGTGGCTACCGAGAAGATCGACGCAATAAAATCATACCGTACACATATTTAGACTATGGCCCTTATTACTCATTTGCCCCAGTTTACGACAGTGGGGCTTCTCATTGCACT-CCAGAGTCAAATCAATTGTTATTAGGAACCACATGGCTACCGGCACGTACTCCATTTGTACTTGGAAGCTGTTCATCGAATAGTTTTGATCCATATAGTTGTGCAAATGGTTTCGAGATAACAGATGAAATAATATCAACTGTCTTGGAAATGGGAGATCAACAGTTAGCTGTCTCTCTTGCGGTTGCAGAAGGTGAACAACGTGGAATAGCCCAATTATCATCTGAATTAGAAGACATAATTCCTGGTCCTGATGTACCTGATGAGTATGTATTTAGTATGTGTTTAGCTAATGCATTTACACGTGACCTTATTAAGAAGGAAGGGAAACTGTCTGCTTTTGATTCTTTTGATTCGTGTTCAGAAGTTAATTCTGATGAAAAAAGTATCAAATCTACAGATGCACACTCTCCTGC] [+] EMBL CD181153 [TGACAGTTGATAGAAACTTGCAAGTCAAAACATCAGATAGTAATGACATATCCAGGGAAACTTATTTAAACATTTTAAATCCAGATAATAATGGTATTATCAGTGAAACAGAACGAGTTCAAAGTATTGGGGACGAGGCAGGCCACTTGTATTCAGGTTCGTATTTACTTCCTAATGGTGGCTACCGAGAAGATCGACGCAATAAAATCATACCGTACACATATTTAGACTATGGCCCTTATTACTCATTTGCCCCAGTTTACGACAGTGGGGCTTCTCATTGCACT CCAGAGTCAAATCAATTGTTATTAGGAACCACATGGCTACCGGCACGTACTCCATTTGTACTTGGAAGCTGTTCATCGAATAGTTTTGATCCATATAGTTGTGCAAATGGTTTCGAGATAACAGATGAAATAATATCAACTGTCTTGGAAATGGGAGATCAACAGTTAGCT ] [+] EMBL CD143175 [TGACAGTTGATAGAAACTTGCAAGTCAAAACATCAGATAGTAATGACATATCCAGGGAAACTTATTTAAACATTTTAAATCCAGATAATAATGGTATTATCAGTGAAATAGAACGAGTTCAAAGTATTGGGGACGAGGCAGGCCACTTGTATTCAGGTTCGTATTTACTTCCTAATGGTGGCTACCGAGAAGATCGACGCAATAAAATCATACCGTACACATATTTAGACTATGGCCCTTATTACTCATTTGCCCCAGTTTACGACAGTGGGGCTTCTCATTGCACTCCCAGAGTC AATCAATTGTTATTAGGAACCACATGGCTACCGGCACGTACTCCATTTGTACTTGGGAGCTGTTC ] [+] EMBL CD132263 [ TGAAACAGAACGAGTTCAAAGTATTGGGGACGAGGCAGGCCACTTGTATTCAGGTTCGTATTTACTTCCTAATGGTGGCTACCGAGAAGATCGACGCAATAAAATCATACCGTACACATATTTAGACTATGGCCCTTATTACTCATTTGCCCCAGTTTACGACAGTGGGGCTTCTCATTGCACT CCAGAGTCAAATCAATTGTTATTAGGAACCACATGGCTACCGGCACGTACTCCATTTGTACTTGGAAGCTGTTCATCGAATAGTTTTGATCCATATAGTTGTGCAAATGGTTTCGAGATAACAGATGAAATAATATCAACTGTCTTGGAAATGGGAGATCAACAGTTAGCTGTCTCT ] [-] EMBL CD167690 [ gcccacaccCACG ACT CA CGCACTTGGAAGCTGTTCATCGAATAGTTTTGATCCATATAGTTGTGCAAATGGTTTCGAGATAACAGATGAAATAATATCAACTGTCTTGGAAATGGGAGATCAACAGTTAGCTGTCTCTCTTGCGGTTGCAGAAGGTGAACAACGTGGAATAGCCCAATTATCATCTGAATTAGAAGACATAATTCCTGGTCCTGATGTACCTGATGAGTATGTATTTAGTATGTGTTTAGCTAATGCATTTACACGTGACCTTATTAAGAAGGAAGGGAAACTGTCTGCTTTTGATTCTTTTGATTCGTGTTCAGAAGTTAATTCTGATGAAAAAAGTATCAAATCTACAGATGCACACTCTCCTGC] consensusID : consensus_9121#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 572 fasta sequence [CCATGGCTAATGCTTTACATGTGCAGTTTACCAACAAATATGGACAAGCTCATATAACTTTGGAGTCACTCCTCGATTCCACAGGTCTCATACCTCATTCATCTCTCCATGAATCAGTCAATAATTCACTAATAGATATGAATTCTGTTCCTGTTATGAAACATTCCGTACCTCTCAATTATTATCCTAACCAAAATTTGTATGCTTCGGAACAAACGTCAACTGAATTAAGTGAAAGTTCTTGTATCACTGAAACTCAAAGACAAGCATTATTACAAGATGTTTGCTTCGAACTTCTTAACCTTCTCAAGGGACAAGACGTTAGTGGCTATTTTCTTTATCCACTACCACACCTCAAACCTTCATGTCCATTTGGATTACTGGATATGGAAAAACAACTTTTCCAGAAATATTACAAAAGCCTGTCTGAGTTTCAAAAAGATGTTTCTGGACTCCTCAATAGCGCTCTTCAATATTATCAAATTGAATCAATGGCTCACAATGAAGCGCAACGTTTGCTAAATCTAACTACTGGGATGGTTAATTCATTGAATGCAAATTATGTCACTATT] [+] EMBL AI975675 [CCATGGCTAATGCTTTACATGTGCAGTTTACCAACAAATATGGACAAGCTCATATAACTTTGGAGTCACTCCTCGATTCCACAGGTCTCATACCTCATTCATCTCTCCATGAATCAGTCAATAATTCACTAATAGATATGAATTCTGTTCCTGTTATGAAACATTCCGTACCTCTCAATTATTATCCTAACCAAAATTTGTATGCTTCGGAACAAACGTCAACTGAATTAAGTGAAAGTTCTTGTATCACTGAAACTCAAAGACAAGCATTATTACAAGATGTTTGCTTCGAACTTCTTAACCTTCTCAAGGGACAAGACGTTAGTGGCTATTTTCTTT ] [+] EMBL CD189405 [ CTCGATTCCACAGGTCTCATACCTCATTCATCTCTCCATGAATCAGTCAATAATTCACTAATAGATATGAATTCTGTTCCTGTTATGAAACATTCCGTACCTCTCAATTATTATCCTAACCAAAATTTGTATGCTTCGGAACAAACGTCAACTGAATTAAGTGAAAGTTCTTGTATCACTGAAACTCAAAGACAAGCATTATTACAAGATGTTTGCTTCGAACTTCTTAACCTTCTCAAGGGACAAGACGTTAGTGGCTATTTTCTTTATCCACTACCACACCTCAAACCTTCATGTCCATTTGGATTACTGGATATGGAAAAACAACTTTTCCAGAAATATTACAAAAGCCTGTCTGAGTTTCAAAAAGATGTTTCTGGACTCCTCAATAGCGCTCTTCAATATTATCAAATTGAATCAATGGCTCACAATGAAGCGCAACGTTTGCTAAATCTAACTACTGGGATGGTTAATTCATTGAATGCAAATTATGTCACTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9121#0 ------------------------------------------------------------ consensus_9121#2 CCATGGCTAATGCTTTACATGTGCAGTTTACCAACAAATATGGACAAGCTCATATAACTT 60 consensus_9121#1 ------------------------------------------------------------ consensus_9121#0 ------------------------------------------------------------ consensus_9121#2 TGGAGTCACTCCTCGATTCCACAGGTCTCATACCTCATTCATCTCTCCATGAATCAGTCA 120 consensus_9121#1 ------------------------------------------------------------ consensus_9121#0 ------------------------------------------------------------ consensus_9121#2 ATAATTCACTAATAGATATGAATTCTGTTCCTGTTATGAAACATTCCGTACCTCTCAATT 180 consensus_9121#1 ------------------------------------------------------------ consensus_9121#0 ------------------------------------------------------------ consensus_9121#2 ATTATCCTAACCAAAATTTGTATGCTTCGGAACAAACGTCAACTGAATTAAGTGAAAGTT 240 consensus_9121#1 ------------------------------------------------------------ consensus_9121#0 -CTCCAGGCCAAAAATTCGGCACGAGGAGCATTATTACAAGATGTTTGCTTCGAACTTCT 59 consensus_9121#2 CTTGTATCACTGAAACTCA--AAGACAAGCATTATTACAAGATGTTTGCTTCGAACTTCT 298 consensus_9121#1 ---------------------------------------TGACAGTTGATAGAAACTTGC 21 ** *** * ***** consensus_9121#0 TAACCTTCTCAAGGGACAAGACGTTAGTGGC-TATTTTCTTTATCC-ACTACCACACCTC 117 consensus_9121#2 TAACCTTCTCAAGGGACAAGACGTTAGTGGC-TATTTTCTTTATCC-ACTACCACACCTC 356 consensus_9121#1 AAG-----TCAAAACATCAGATAGTAATGACATATCCAGGGAAACTTATTTAAACATTTT 76 * **** * *** ** ** * *** * * * * *** * consensus_9121#0 AAACCTTCATGTCCATTTGGATTACTGGATATGGAAAAACAACTTTTCCAGAAATATTAC 177 consensus_9121#2 AAACCTTCATGTCCATTTGGATTACTGGATATGGAAAAACAACTTTTCCAGAAATATTAC 416 consensus_9121#1 AAATCCAGATAATAATG-GTATTATCAG---TGAAACAGAACGAGTTCAAAGTATTGGGG 132 *** * ** ** * **** * ** ** * * *** * ** consensus_9121#0 AAAAGCCTGTCTGAGTTTCAAAAAGATGTTTCTGGACTCCTCAATAGCGCTCTTCAATAT 237 consensus_9121#2 AAAAGCCTGTCTGAGTTTCAAAAAGATGTTTCTGGACTCCTCAATAGCGCTCTTCAATAT 476 consensus_9121#1 ACGAGGCAGGCC-ACTTGTATTCAGGTTCGTATTTACTTCCTAATGGTGGCTACCGAGA- 190 * ** * * * * ** * ** * * * *** * *** * * * * * consensus_9121#0 TATCAAATTGAATCAATGGCTCACAATGAAGCGCAACGTTTGCTAAATCTAACTACTGAT 297 consensus_9121#2 TATCAAATTGAATCAATGGCTCACAATGAAGCGCAACGTTTGCTAAATCTAACTACTGGG 536 consensus_9121#1 ----AGATCGACGCAATAA---------AATCATACCGTACACATATTTAGACTA-TGGC 236 * ** ** **** ** * * *** * * * **** ** consensus_9121#0 TGGTTTAATTCATTGAATGCAAATTATGTCACTA---TTTTGAATCGTCCACCAGATAGT 354 consensus_9121#2 ATGGTTAATTCATTGAATGCAAATTATGTCACTA---TT--------------------- 572 consensus_9121#1 CCTTATTACTCATTTGCCCCAGTTTACGACAGTGGGGCTTCTCATTGCACTCCAGA-GTC 295 * * ***** ** *** * ** * * consensus_9121#0 GGAGTGACAGTTGATAGAAACTTGCAAGTCAAAACATCAGATAGTAATGACATATCCAGG 414 consensus_9121#2 ------------------------------------------------------------ consensus_9121#1 AAATCAATTGTTATTAGGAACCACATGGCTA--CCGGCACGTACTCCATTTGTACTTGGA 353 consensus_9121#0 GAAACTTATTTAAACATTTTAAATCCAGATAATAATGGTATTATCAGTGAAACAGAACGA 474 consensus_9121#2 ------------------------------------------------------------ consensus_9121#1 AGCTGTTCATCGAATAGTTTTGATCCATATAGTTGTGCAAATGGTTTCGAGATAACAGAT 413 consensus_9121#0 GTTCAAAGTATTGGGGACGAGGTTTGTATATATCTTATTAGCTTTTCCTTTTGTTACCAC 534 consensus_9121#2 ------------------------------------------------------------ consensus_9121#1 G----AAATAATATCAACT-GTCTTGGAAATGGGAGATCAACAGTTAGCTGTCTCTCTTG 468 consensus_9121#0 TGATTTAAGAGTAGGATATAACGATACAAATTTGAATAGCTCTTCGATTTGAACCTTAGT 594 consensus_9121#2 ------------------------------------------------------------ consensus_9121#1 CGGTTGCAGAAGGTGA-ACAACGTGGAATAGCCCAATTATCATCTGAATTAGA----AGA 523 consensus_9121#0 CATAGTTA--AATACTTTTTTTATCAATGAGTTAGGCTTATTTGTGTGTCTTATTTATTC 652 consensus_9121#2 ------------------------------------------------------------ consensus_9121#1 CATAATTCCTGGTCCTGATGTACCTGATGAGTATGTATTTAGTATGTGTTTAGCTAATGC 583 consensus_9121#0 AATAGTTNTAAAGCACTTTGATTANGCCACTCAACCAATCAGCGCTAGCGAATAATTGGA 712 consensus_9121#2 ------------------------------------------------------------ consensus_9121#1 ATTTACACGTGACCTTATTAAGAAGGAAGGGAAACTGTCT---GCTTTTGATTCTTTTGA 640 consensus_9121#0 GAAGAATCTAGAATCTTCTGGTGTAAGTTATAAATATATACGTTTTATTATGTGATCACT 772 consensus_9121#2 ------------------------------------------------------------ consensus_9121#1 TTCGTGTTCAGAAGTTAATTCTG---ATGAAAAAAGTATCAAATCTAC-AGATGCACACT 696 consensus_9121#0 ACCATCTACCTGGTTTTTGGATACATTACG 802 consensus_9121#2 ------------------------------ consensus_9121#1 CTCCTGC----------------------- 703 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||