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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 802 fasta sequence
[CTCCAGGCCAAAAATTCGGCACGAGGAGCATTATTACAAGATGTTTGCTTCGAACTTCTTAACCTTCTCAAGGGACAAGACGTTAGTGGCTATTTTCTTTATCCACTACCACACCTCAAACCTTCATGTCCATTTGGATTACTGGATATGGAAAAACAACTTTTCCAGAAATATTACAAAAGCCTGTCTGAGTTTCAAAAAGATGTTTCTGGACTCCTCAATAGCGCTCTTCAATATTATCAAATTGAATCAATGGCTCACAATGAAGCGCAACGTTTGCTAAATCTAACTACTGATTGGTTTAATTCATTGAATGCAAATTATGTCACTATTTTGAATCGTCCACCAGATAGTGGAGTGACAGTTGATAGAAACTTGCAAGTCAAAACATCAGATAGTAATGACATATCCAGGGAAACTTATTTAAACATTTTAAATCCAGATAATAATGGTATTATCAGTGAAACAGAACGAGTTCAAAGTATTGGGGACGAGGTTTGTATATATCTTATTAGCTTTTCCTTTTGTTACCACTGATTTAAGAGTAGGATATAACGATACAAATTTGAATAGCTCTTCGATTTGAACCTTAGTCATAGTTAAATACTTTTTTTATCAATGAGTTAGGCTTATTTGTGTGTCTTATTTATTCAATAGTTNTAAAGCACTTTGATTANGCCACTCAACCAATCAGCGCTAGCGAATAATTGGAGAAGAATCTAGAATCTTCTGGTGT-AAGTTATAAATAT-AT-ACG-TTTTATTA-TGTGA-TCACTACCA-TCTACCTGG--TTTTTGG-ATACA-TTACG]
[+] EMBL CD079513 [CTCCAGGCCAAAAATTCGGCACGAGGAGCATTATTACAAGATGTTTGCTTCGAACTTCTTAACCTTCTCAAGGGACAAGACGTTAGTGGCTATTTTCTTTATCCACTACCACACCTCAAACCTTCATGTCCATTTGGATTACTGGATATGGAAAAACAACTTTTCCAGAAATATTACAAAAGCCTGTCTGAGTTTCAAAAAGATGTTTCTGGACTCCTCAATAGCGCTCTTCAATATTATCAAATTGAATCAATGGCTCACAATGAAGCGCAACGTTTGCTAAATCTAACTACTGATTGGTTTAATTCATTGAATGCAAATTATGTCACTATTTTGAATCGTCCACCAGATAGTGGAGTGACAGTTGATAGAAACTTGCAAGTCAAAACATCAGATAGTAATGACATATCCAGGGAAACTTATTTAAACATTTTAAATCCAGATAATAATGGTATTATCAGTGAAACAGAACGAGTTCAAAGTATTGGGGACGAGGTTTGTATATATCTTATTAGCTTTTCCTTTTGTTACCACTGATTTAAGAGTAGGATATAACGATACAAATTTGAATAGCTCTTCGATTTGAACCTTAGTCATAGTTAAATACTTTTTTTATCAATGAGTTAGGCTTATTTGTGTGTCTTATTTATTCAATAGTTNTAAAGCACTTTGATTANGCCACTCAACCAATCAGCGCTAGCGAATAATTGGAGAAGAATCTAGAATCTTCTGGTGT AAGTTATAAATAT AT ACG TTTTATTA TGTGA TCACTACCA TCTACCTGG TTTTTGG ATACA TTA ]
[-] EMBL CD073781 [ ATTTGGATTACTGGATATGGAAAAACAACTTTTCCAGAAATATTACAAAAGCCTGTCTGAGTTTCAAAAAGATGTTTCTGGACTCCTCAATAGCGCTCTTCAATATTATCAAATTGAATCAATGGCTCACAATGAAGCGCAACGTTTGCTAAATCTAACTACTGATTGGTTTAATTCATTGAATGCAAATTATGTCACTATTTTGAATCGTCCACCAGATAGTGGAGTGACAGTTGATAGAAACTTGCAAGTCAAAACATCAGATAGTAATGACATATCCAGGGAAACTTATTTAAACATTTTAAATCCAGATAATAATGGTATTATCAGTGAAACAGAACGAGTTCAAAGTATTGGGGACGAGGTTTGTATATATCTTATTAGCTTTTCCTTTTGTTACCACTGATTTAAGAGTAGGATATAACGATACAAATTTGAATAGCTCTTCGATTTGAACCTTAGTCATAGTTAAATACTTTTTTTATCAATGAGTTAGGCTTATTTGTGTGTCTTATTTATTCAATAGTTTTAAAGCACTTTGATTAGGCCACTCAACCAATCAGCGCTAGCGAATAATTGGAGAAGAATCTAGAATCTTCTGGTGTAAAGTTATAAATATAATAACGTTTTTATTATTGTGATTCACTGCCATTCTACCTGGGTTTTTTGGAATACAGTTACG]
consensusID : consensus_9121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 703 fasta sequence
[TGACAGTTGATAGAAACTTGCAAGTCAAAACATCAGATAGTAATGACATATCCAGGGAAACTTATTTAAACATTTTAAATCCAGATAATAATGGTATTATCAGTGAAACAGAACGAGTTCAAAGTATTGGGGACGAGGCAGGCCACTTGTATTCAGGTTCGTATTTACTTCCTAATGGTGGCTACCGAGAAGATCGACGCAATAAAATCATACCGTACACATATTTAGACTATGGCCCTTATTACTCATTTGCCCCAGTTTACGACAGTGGGGCTTCTCATTGCACT-CCAGAGTCAAATCAATTGTTATTAGGAACCACATGGCTACCGGCACGTACTCCATTTGTACTTGGAAGCTGTTCATCGAATAGTTTTGATCCATATAGTTGTGCAAATGGTTTCGAGATAACAGATGAAATAATATCAACTGTCTTGGAAATGGGAGATCAACAGTTAGCTGTCTCTCTTGCGGTTGCAGAAGGTGAACAACGTGGAATAGCCCAATTATCATCTGAATTAGAAGACATAATTCCTGGTCCTGATGTACCTGATGAGTATGTATTTAGTATGTGTTTAGCTAATGCATTTACACGTGACCTTATTAAGAAGGAAGGGAAACTGTCTGCTTTTGATTCTTTTGATTCGTGTTCAGAAGTTAATTCTGATGAAAAAAGTATCAAATCTACAGATGCACACTCTCCTGC]
[+] EMBL CD181153 [TGACAGTTGATAGAAACTTGCAAGTCAAAACATCAGATAGTAATGACATATCCAGGGAAACTTATTTAAACATTTTAAATCCAGATAATAATGGTATTATCAGTGAAACAGAACGAGTTCAAAGTATTGGGGACGAGGCAGGCCACTTGTATTCAGGTTCGTATTTACTTCCTAATGGTGGCTACCGAGAAGATCGACGCAATAAAATCATACCGTACACATATTTAGACTATGGCCCTTATTACTCATTTGCCCCAGTTTACGACAGTGGGGCTTCTCATTGCACT CCAGAGTCAAATCAATTGTTATTAGGAACCACATGGCTACCGGCACGTACTCCATTTGTACTTGGAAGCTGTTCATCGAATAGTTTTGATCCATATAGTTGTGCAAATGGTTTCGAGATAACAGATGAAATAATATCAACTGTCTTGGAAATGGGAGATCAACAGTTAGCT ]
[+] EMBL CD143175 [TGACAGTTGATAGAAACTTGCAAGTCAAAACATCAGATAGTAATGACATATCCAGGGAAACTTATTTAAACATTTTAAATCCAGATAATAATGGTATTATCAGTGAAATAGAACGAGTTCAAAGTATTGGGGACGAGGCAGGCCACTTGTATTCAGGTTCGTATTTACTTCCTAATGGTGGCTACCGAGAAGATCGACGCAATAAAATCATACCGTACACATATTTAGACTATGGCCCTTATTACTCATTTGCCCCAGTTTACGACAGTGGGGCTTCTCATTGCACTCCCAGAGTC AATCAATTGTTATTAGGAACCACATGGCTACCGGCACGTACTCCATTTGTACTTGGGAGCTGTTC ]
[+] EMBL CD132263 [ TGAAACAGAACGAGTTCAAAGTATTGGGGACGAGGCAGGCCACTTGTATTCAGGTTCGTATTTACTTCCTAATGGTGGCTACCGAGAAGATCGACGCAATAAAATCATACCGTACACATATTTAGACTATGGCCCTTATTACTCATTTGCCCCAGTTTACGACAGTGGGGCTTCTCATTGCACT CCAGAGTCAAATCAATTGTTATTAGGAACCACATGGCTACCGGCACGTACTCCATTTGTACTTGGAAGCTGTTCATCGAATAGTTTTGATCCATATAGTTGTGCAAATGGTTTCGAGATAACAGATGAAATAATATCAACTGTCTTGGAAATGGGAGATCAACAGTTAGCTGTCTCT ]
[-] EMBL CD167690 [ gcccacaccCACG ACT CA CGCACTTGGAAGCTGTTCATCGAATAGTTTTGATCCATATAGTTGTGCAAATGGTTTCGAGATAACAGATGAAATAATATCAACTGTCTTGGAAATGGGAGATCAACAGTTAGCTGTCTCTCTTGCGGTTGCAGAAGGTGAACAACGTGGAATAGCCCAATTATCATCTGAATTAGAAGACATAATTCCTGGTCCTGATGTACCTGATGAGTATGTATTTAGTATGTGTTTAGCTAATGCATTTACACGTGACCTTATTAAGAAGGAAGGGAAACTGTCTGCTTTTGATTCTTTTGATTCGTGTTCAGAAGTTAATTCTGATGAAAAAAGTATCAAATCTACAGATGCACACTCTCCTGC]
consensusID : consensus_9121#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 572 fasta sequence
[CCATGGCTAATGCTTTACATGTGCAGTTTACCAACAAATATGGACAAGCTCATATAACTTTGGAGTCACTCCTCGATTCCACAGGTCTCATACCTCATTCATCTCTCCATGAATCAGTCAATAATTCACTAATAGATATGAATTCTGTTCCTGTTATGAAACATTCCGTACCTCTCAATTATTATCCTAACCAAAATTTGTATGCTTCGGAACAAACGTCAACTGAATTAAGTGAAAGTTCTTGTATCACTGAAACTCAAAGACAAGCATTATTACAAGATGTTTGCTTCGAACTTCTTAACCTTCTCAAGGGACAAGACGTTAGTGGCTATTTTCTTTATCCACTACCACACCTCAAACCTTCATGTCCATTTGGATTACTGGATATGGAAAAACAACTTTTCCAGAAATATTACAAAAGCCTGTCTGAGTTTCAAAAAGATGTTTCTGGACTCCTCAATAGCGCTCTTCAATATTATCAAATTGAATCAATGGCTCACAATGAAGCGCAACGTTTGCTAAATCTAACTACTGGGATGGTTAATTCATTGAATGCAAATTATGTCACTATT]
[+] EMBL AI975675 [CCATGGCTAATGCTTTACATGTGCAGTTTACCAACAAATATGGACAAGCTCATATAACTTTGGAGTCACTCCTCGATTCCACAGGTCTCATACCTCATTCATCTCTCCATGAATCAGTCAATAATTCACTAATAGATATGAATTCTGTTCCTGTTATGAAACATTCCGTACCTCTCAATTATTATCCTAACCAAAATTTGTATGCTTCGGAACAAACGTCAACTGAATTAAGTGAAAGTTCTTGTATCACTGAAACTCAAAGACAAGCATTATTACAAGATGTTTGCTTCGAACTTCTTAACCTTCTCAAGGGACAAGACGTTAGTGGCTATTTTCTTT ]
[+] EMBL CD189405 [ CTCGATTCCACAGGTCTCATACCTCATTCATCTCTCCATGAATCAGTCAATAATTCACTAATAGATATGAATTCTGTTCCTGTTATGAAACATTCCGTACCTCTCAATTATTATCCTAACCAAAATTTGTATGCTTCGGAACAAACGTCAACTGAATTAAGTGAAAGTTCTTGTATCACTGAAACTCAAAGACAAGCATTATTACAAGATGTTTGCTTCGAACTTCTTAACCTTCTCAAGGGACAAGACGTTAGTGGCTATTTTCTTTATCCACTACCACACCTCAAACCTTCATGTCCATTTGGATTACTGGATATGGAAAAACAACTTTTCCAGAAATATTACAAAAGCCTGTCTGAGTTTCAAAAAGATGTTTCTGGACTCCTCAATAGCGCTCTTCAATATTATCAAATTGAATCAATGGCTCACAATGAAGCGCAACGTTTGCTAAATCTAACTACTGGGATGGTTAATTCATTGAATGCAAATTATGTCACTATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9121#0 ------------------------------------------------------------
consensus_9121#2 CCATGGCTAATGCTTTACATGTGCAGTTTACCAACAAATATGGACAAGCTCATATAACTT 60
consensus_9121#1 ------------------------------------------------------------
consensus_9121#0 ------------------------------------------------------------
consensus_9121#2 TGGAGTCACTCCTCGATTCCACAGGTCTCATACCTCATTCATCTCTCCATGAATCAGTCA 120
consensus_9121#1 ------------------------------------------------------------
consensus_9121#0 ------------------------------------------------------------
consensus_9121#2 ATAATTCACTAATAGATATGAATTCTGTTCCTGTTATGAAACATTCCGTACCTCTCAATT 180
consensus_9121#1 ------------------------------------------------------------
consensus_9121#0 ------------------------------------------------------------
consensus_9121#2 ATTATCCTAACCAAAATTTGTATGCTTCGGAACAAACGTCAACTGAATTAAGTGAAAGTT 240
consensus_9121#1 ------------------------------------------------------------
consensus_9121#0 -CTCCAGGCCAAAAATTCGGCACGAGGAGCATTATTACAAGATGTTTGCTTCGAACTTCT 59
consensus_9121#2 CTTGTATCACTGAAACTCA--AAGACAAGCATTATTACAAGATGTTTGCTTCGAACTTCT 298
consensus_9121#1 ---------------------------------------TGACAGTTGATAGAAACTTGC 21
** *** * *****
consensus_9121#0 TAACCTTCTCAAGGGACAAGACGTTAGTGGC-TATTTTCTTTATCC-ACTACCACACCTC 117
consensus_9121#2 TAACCTTCTCAAGGGACAAGACGTTAGTGGC-TATTTTCTTTATCC-ACTACCACACCTC 356
consensus_9121#1 AAG-----TCAAAACATCAGATAGTAATGACATATCCAGGGAAACTTATTTAAACATTTT 76
* **** * *** ** ** * *** * * * * *** *
consensus_9121#0 AAACCTTCATGTCCATTTGGATTACTGGATATGGAAAAACAACTTTTCCAGAAATATTAC 177
consensus_9121#2 AAACCTTCATGTCCATTTGGATTACTGGATATGGAAAAACAACTTTTCCAGAAATATTAC 416
consensus_9121#1 AAATCCAGATAATAATG-GTATTATCAG---TGAAACAGAACGAGTTCAAAGTATTGGGG 132
*** * ** ** * **** * ** ** * * *** * **
consensus_9121#0 AAAAGCCTGTCTGAGTTTCAAAAAGATGTTTCTGGACTCCTCAATAGCGCTCTTCAATAT 237
consensus_9121#2 AAAAGCCTGTCTGAGTTTCAAAAAGATGTTTCTGGACTCCTCAATAGCGCTCTTCAATAT 476
consensus_9121#1 ACGAGGCAGGCC-ACTTGTATTCAGGTTCGTATTTACTTCCTAATGGTGGCTACCGAGA- 190
* ** * * * * ** * ** * * * *** * *** * * * * *
consensus_9121#0 TATCAAATTGAATCAATGGCTCACAATGAAGCGCAACGTTTGCTAAATCTAACTACTGAT 297
consensus_9121#2 TATCAAATTGAATCAATGGCTCACAATGAAGCGCAACGTTTGCTAAATCTAACTACTGGG 536
consensus_9121#1 ----AGATCGACGCAATAA---------AATCATACCGTACACATATTTAGACTA-TGGC 236
* ** ** **** ** * * *** * * * **** **
consensus_9121#0 TGGTTTAATTCATTGAATGCAAATTATGTCACTA---TTTTGAATCGTCCACCAGATAGT 354
consensus_9121#2 ATGGTTAATTCATTGAATGCAAATTATGTCACTA---TT--------------------- 572
consensus_9121#1 CCTTATTACTCATTTGCCCCAGTTTACGACAGTGGGGCTTCTCATTGCACTCCAGA-GTC 295
* * ***** ** *** * ** * *
consensus_9121#0 GGAGTGACAGTTGATAGAAACTTGCAAGTCAAAACATCAGATAGTAATGACATATCCAGG 414
consensus_9121#2 ------------------------------------------------------------
consensus_9121#1 AAATCAATTGTTATTAGGAACCACATGGCTA--CCGGCACGTACTCCATTTGTACTTGGA 353
consensus_9121#0 GAAACTTATTTAAACATTTTAAATCCAGATAATAATGGTATTATCAGTGAAACAGAACGA 474
consensus_9121#2 ------------------------------------------------------------
consensus_9121#1 AGCTGTTCATCGAATAGTTTTGATCCATATAGTTGTGCAAATGGTTTCGAGATAACAGAT 413
consensus_9121#0 GTTCAAAGTATTGGGGACGAGGTTTGTATATATCTTATTAGCTTTTCCTTTTGTTACCAC 534
consensus_9121#2 ------------------------------------------------------------
consensus_9121#1 G----AAATAATATCAACT-GTCTTGGAAATGGGAGATCAACAGTTAGCTGTCTCTCTTG 468
consensus_9121#0 TGATTTAAGAGTAGGATATAACGATACAAATTTGAATAGCTCTTCGATTTGAACCTTAGT 594
consensus_9121#2 ------------------------------------------------------------
consensus_9121#1 CGGTTGCAGAAGGTGA-ACAACGTGGAATAGCCCAATTATCATCTGAATTAGA----AGA 523
consensus_9121#0 CATAGTTA--AATACTTTTTTTATCAATGAGTTAGGCTTATTTGTGTGTCTTATTTATTC 652
consensus_9121#2 ------------------------------------------------------------
consensus_9121#1 CATAATTCCTGGTCCTGATGTACCTGATGAGTATGTATTTAGTATGTGTTTAGCTAATGC 583
consensus_9121#0 AATAGTTNTAAAGCACTTTGATTANGCCACTCAACCAATCAGCGCTAGCGAATAATTGGA 712
consensus_9121#2 ------------------------------------------------------------
consensus_9121#1 ATTTACACGTGACCTTATTAAGAAGGAAGGGAAACTGTCT---GCTTTTGATTCTTTTGA 640
consensus_9121#0 GAAGAATCTAGAATCTTCTGGTGTAAGTTATAAATATATACGTTTTATTATGTGATCACT 772
consensus_9121#2 ------------------------------------------------------------
consensus_9121#1 TTCGTGTTCAGAAGTTAATTCTG---ATGAAAAAAGTATCAAATCTAC-AGATGCACACT 696
consensus_9121#0 ACCATCTACCTGGTTTTTGGATACATTACG 802
consensus_9121#2 ------------------------------
consensus_9121#1 CTCCTGC----------------------- 703
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||