These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9122#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [AATACCCTGGGGTTACGTCTTCGCTCTGGACTACATACAATGGTATAAAAAAATGATACTAATGGGTGGCCCATCGAAAAAAATATGGATAAGAGGGCAGCTTTGATTGGTGTTAACTCAACTAGAAAATAAACAGTTTAAACTGAAACTTCAATGATAGGCAACTAAAATAAAAGGCGTATTTCGGATCTTATCTTTACTGAATCTTTAGTTGGCAACCGGTTATATCAAATGGCTACCCAAATGAGAGAGATTAAAACTAAAAATAATAGAGTGGGGTTGTCAGCAGGCAATTTAACAAGACGTGTGTTTAACACTGACCAAGATTATGTGGAATGAAAAGATAAAATCAATAATTAAATGAAAACAGAAACTCACCACCTATAAATCTAGCCACTGTTGAATAGTCCGAACAAACTGGAAGAATTTTATTTACAGTATCTAGTAAAGCGGGAGTCATTTTTTCATCCACTTTANAACAACGGACTGCGTAACGATTTGATAAAGGCAGAGGTTTGATGTAAACTCCTTGGTTGCCTTGCAACACTGTAGTAGATCGCTAACACAGCGTATTCCTGGATAGCAT] [+] EMBL CD153004 [AATACCCTGGGGTTACGTCTTCGCTCTGGACTACATACAATGGTATAAAAAAATGATACTAATGGGTGGCCCATCGAAAAAAATATGGATAAGAGGGCAGCTTTGATTGGTGTTAACTCAACTAGAAAATAAACAGTTTAAACTGAAACTTCAATGATAGGCAACTAAAATAAAAGGCGTATTTCGGATCTTATCTTTACTGAATCTTTAGTTGGCAACCGGTTATATCAAATGGCTACCCAAATGAGAGAGATTAAAACTAAAAATAATAGAGTGGGGTTGTCAGCAGGCAATTTAACAAGACGTGTGTTTAACACTGACCAAGATTATGTGGAATGAAAAGATAAAATCAATAATTAAATGAAAACAGAAACTCACCACCTATAAATCTAGCCACTGTTGAATAGTCCGAACAAACTGGAAGAATTTTATTTACAGTATCTAGTAAAGCGGGAGTCATTTTTTCATCCACTTTANAACAACGGACTGCGTAACGATTTGATAAAGGCAGAGGTTTGATGTAAACTCCTTGGTTGCCTTGCAACACTGTAGTAGATCGCTAACACAGCGTATTCCTGGATAGCAT] consensusID : consensus_9122#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 573 fasta sequence [GTGAGGAATCTTTGGCTAATATTTATAATAGCACTGGAATATTACTATACATTATTTTTGTTTACGAATTATTGTGTTCATGACGTATGGAAATTTCTGAGAATCAAATTTTTTTAGTTTGTGATCAGTTTTATTTAAATATGTTTATGTTTGCCAAAGAGAAGTCCACATTCGAACATGGAATGGTCAACCAGGCACTAGCAGGTGCAATGCGTGGTTTACTTAAAGATTATCCTATTCTGTTATGTCAACTTGAATACCAGTATAAAATTGGTCATTTGGGGATAGTTAAACTGCACTTTTTTTTGCAGGAAACAGCTACCGCTTTCAATCAGTTAACTCGCCTTGTTAATAATATAAACACAGGACAATGTTCTGGTGGTGCAGTGTTATCAGTATTATATGATTCTTTAAGGTCTGTATATGGTGTTAAACAATTACATGATTTAATACTTTATCTCCTGCGTTCTGCTACCGTACCTTTTTTTAAAATTCTTCANAAATGGATATATCGGNGTGTAATTTCTGACCCATATAAAGAGTTTTTCATTTCAGCTGGATCTATGCCGGATT] [+] EMBL CD154150 [GTGAGGAATCTTTGGCTAATATTTATAATAGCACTGGAATATTACTATACATTATTTTTGTTTACGAATTATTGTGTTCATGACGTATGGAAATTTCTGAGAATCAAATTTTTTTAGTTTGTGATCAGTTTTATTTAAATATGTTTATGTTTGCCAAAGAGAAGTCCACATTCGAACATGGAATGGTCAACCAGGCACTAGCAGGTGCAATGCGTGGTTTACTTAAAGATTATCCTATTCTGTTATGTCAACTTGAATACCAGTATAAAATTGGTCATTTGGGGATAGTTAAACTGCACTTTTTTTTGCAGGAAACAGCTACCGCTTTCAATCAGTTAACTCGCCTTGTTAATAATATAAACACAGGACAATGTTCTGGTGGTGCAGTGTTATCAGTATTATATGATTCTTTAAGGTCTGTATATGGTGTTAAACAATTACATGATTTAATACTTTATCTCCTGCGTTCTGCTACCGTACCTTTTTTTAAAATTCTTCANAAATGGATATATCGGNGTGTAATTTCTGACCCATATAAAGAGTTTTTCATTTCAGCTGGATCTATGCCGGATT] [+] EMBL CD153996 [GTGAGGAATCTTTGGCTAATATTTATAATAGCACTGGAATATTACTATACATTATTTTTGTTTACGAATTATTGTGTTCATGACGTATGGAAATTTCTGAGAATCAAATTTTTTTAGTTTGTGATCAGTTTTATTTAAATATGTTTATGTTTGCCAAAGAGAAGTCCACATTCGAACATGGAATGGTCAACCAGGCACTAGCAGGTGCAATGCGTGGTTTACTTAAAGATTATCTTATTCTGTTATGTCAACTTGAATACCAGTATAAAATTGGTCATTTGGGGATAGTTAAACTGCACTTTTTTTTGCAGGAAACAGCTACCGCTTTCAATCAGTTAACTCGCCTTGTTAATAATATAAACACAGGACAATGTTCTGGTGGTGCAGTGTTATCAGTATTATATGATTCTTTAAGGTCTGTATATGGTGTTAAACAATTACATGATTTAATACTTTATCTCCTGCGTTCTGCTACCGTACCTTTTTTTANAATTCTTCANAAATGGATATATCGGNGTGTAATTTCTGACCCATATAAAGAGTTNTTCATTTCAGCTGGATCTATGCCGGA ] consensusID : consensus_9122#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 517 fasta sequence [ACCCCAAAAACTCTTGAGCTCACCATTATATGATTCTTTAAGGTCTGTATATGGTGTTAAACAATTACATGATTTAATACTTTATCTCCTGCGTTCTGCTACCGTACCTTTTTTTAAAATTCTTCAAAAATGGATATATCGGGGTGTAATTTCTGACCCATATAAAGAGTTTTTCATTTCAGCTGGATCTATGCCGGATTTTTATGATCCTGATAAATCATCTCCAAATAACCTTCATTCAGTTTCACTGCAGTTTGATCGTCTTACACAGAATTATGTGGACTGGGCATTCTTTTGGGAGTGCCATTATTCTCTTGTATCAATAAATTTACCGAGTTTTCTTGAACCTAGTGCTTCGAAAATTCTCAGTACGGGAAAGTATTTGAATGTTGTACAGCAATGCGCCGATCGTTATGAACTTCCTACGTGTGAAGAACTTGTCTATAATAAAGAGCATTCAGTGTTTCTTGGTAAAACTGATCAAGCTCATATGTATGCAAGCAGTTTATTATTGAAA] [+] EMBL CD128749 [ACCCCAAAAACTCTTGAGCTCACCATTATATGATTCTTTAAGGTCTGTATATGGTGTTAAACAATTACATGATTTAATACTTTATCTCCTGCGTTCTGCTACCGTACCTTTTTTTAAAATTCTTCAAAAATGGATATATCGGGGTGTAATTTCTGACCTATATAAAGAGTTTTTCATTTCAGCTGGATCTATGCCGGATTTTTATGATCCTGATAAATC ] [+] EMBL CD133869 [ CAAAAATGGATATATCGGGGTGTAATTTCTGACCCATATAAAGAGTTTTTCATTTCAGCTGGATCTATGCCGGATTTTTATGATCCTGATAAATCATCTCCAAATAACCTTCATTCAGTTTCACTGCAGTTTGATCGTCTTACACAGAATTATGTGGACTGGGCATTCTTTTGGGAGTGCCATTATTCTCTTGTATCAATAAATTTACCGAGTTTTCTTGAACCTAGTGCTTCGAAAATTCTCAGTACGGGAAAGTATTTGAATGTTGTACAGCAATGCGCCGATCGTTATGAACTTCCTACGTGTGAAGAACTTGTCTATAATAAAGAGCATTCAGTGTTTCTTGGTAAAACTGATCAAGCTCATATGTATGCAAGCAGTTTATTATTGAAA] [+] EMBL CD133812 [ CAAAAATGGATATATCGGGGTGTAATTTCTGACCCATATAAAGAGTTTTTCATTTCAGCTGGATCTATGCCGGATTTTTATGATCCTGATAAATCATCTCCAAATAACCTTCATTCAGTTTCACTGCAGTTTGATCGTCTTACACAGAATTATGTGGACTGGGCATTCTTTTGGGAGTGCCATTATTCTCTTGTATCAATAAATTTACCGAGTTTTCTTGAACCTAGTGCTTCGAAAATTCTCAGTACGGGAAAGTATTTGAATGTTGTACAGCAATGCGCCGATCGTTATGAACTTCCTACGTGTGAAGAACTTGTCTATAATAAAGAGCATTCAGTGTTTCTTGGTAAAACTGATCAAGCTCATATGTATGCAAGCAGTTTATTATTGAAA] [-] EMBL CD202860 [ GGGGTGTAATTTCTGACCCATATAAAGAGTTTTTCATTTCAGCTGGATCTATGCCGGATTTTTATGATCCTGATAAATCATCTCCAAATAACCTTCATTCAGTTTCACTGCAGTTTGATCGTCTTACACAGAATTATGTGGACTGGGCATTCTTTTGGGAGTGCCATTATTCTCTTGTATCAATAAATTTACCGAGTTTTCTTGAACCTAGTGCTTCG ] consensusID : consensus_9122#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 415 fasta sequence [AACCCATTGGGTCCTGCGTTNNTATATTATTAACAAGGCGAGTTAACTGATTGAAAGCGGTAGCTGTTTCCTGCAAAAAAAAGTGCAGTTTAACTATCCCCAAATGACCAATTTTATACTGGTATTCAAGTTGACATAACAGAATAAGATAATCTTTAAGTAAACCACGCATTGCACCTGCTAGTGCCCGGTTGACCATTCCATGTTCGAATGTGGACTTCTCACCTATAAATCTAGCCACTGTTGAATAGTCCGAACAAACTGGAAGAATTTTATTTACAGTATCTAGTAAAGCGGGAGTCATTTTTTCATCCACTTTAAAACAACGGACTGCGTAACGATTTGATAAAGGCAGAGGTTTGATGTAAACTCCTTGGTTGCCTTGCAAGCACTGTAGTAGATCGCTAACAACAGC] [-] EMBL CD148438 [AACCCATTGGGTCCTGCGTTNNTATATTATTAACAAGGCGAGTTAACTGATTGAAAGCGGTAGCTGTTTCCTGCAAAAAAAAGTGCAGTTTAACTATCCCCAAATGACCAATTTTATACTGGTATTCAAGTTGACATAACAGAATAAGATAATCTTTAAGTAAACCACGCATTGCACCTGCTAGTGCCCGGTTGACCATTCCATGTTCGAATGTGGACTTCTCACCTATAAATCTAGCCACTGTTGAATAGTCCGAACAAACTGGAAGAATTTTATTTACAGTATCTAGTAAAGCGGGAGTCATTTTTTCATCCACTTTAAAACAACGGACTGCGTAACGATTTGATAAAGGCAGAGGTTTGATGTAAACTCCTTGGTTGCCTTGCAAGCACTGTAGTAGATCGCTAACAACAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9122#0 --AATACCCTGGGGTTACGTCTTCGCTCTGGACTACATACAATGGTATAAAAAAATGATA 58 consensus_9122#3 ------------------------------------------------------------ consensus_9122#1 GTGAGGAATCTTTGGCTAATATTTATAATAGCACTGGAATATTACTATACATTATTTTTG 60 consensus_9122#2 ---------------------ACCCCAAAAACTCTTGAGCTCACCATTATATGATTCT-- 37 consensus_9122#0 CTAATGGGTGGCCCATCGAAAAAAATATGGATAAGAGGGCAGCTTTGATTGGTGTTAACT 118 consensus_9122#3 ------------------------------------------------------------ consensus_9122#1 TTTACGAATTATTGTGTTCATGACGTATGGAAATTTCTGAGAATCAAATTTTTTTAGTTT 120 consensus_9122#2 -TTAAGG-----TCTGTATATGGTGT-TAAACAATTACATGATTTAATACTTTATCTCCT 90 consensus_9122#0 -CAACTAGAAAATAAACAGTTTAAACTGAAACTTCAATGATAGGCAACTAAAATAAAAGG 177 consensus_9122#3 -AACCCATTGGGTCCTGCGTTNNTATATTATTAACAAGGCGAGTTAACTGAT-TGAAAGC 58 consensus_9122#1 GTGATCAGTTTTATTTAAATATGTTTATGTTTGCCAAAGAGAAGTCCACATTCGAACATG 180 consensus_9122#2 GCGTTCTGCTACCGTACCTTTTTTTAAAATTCTTCAAAAATGGAT--ATATCGGGGTGTA 148 * *** consensus_9122#0 CGTATTTCGGATCTTATCTTTACTGAATCTTTAGTTGGCAACCGGTTATATCAAA--TGG 235 consensus_9122#3 GGTAGCTG----TTTCCTGCAAAAAAAAGTGCAGTT--TAACTATCC---CCAAA--TGA 107 consensus_9122#1 GAATGGTC----AACCAGGCACTAGCAGGTGCAAT---GCGTGGTTTACTTAAAGATTAT 233 consensus_9122#2 -ATTTCTG----ACCCATATAAAGAGTTTTTCATTTCAGCTGGATCTATGCCGGATTTTT 203 * * * * * consensus_9122#0 CTACCCAAATGAGAGAGATTAAAACTAAAAATAATAGAGTGGGGTTGTCAGCAGGCAATT 295 consensus_9122#3 CCAATTTTAT-ACTGGTATTCAAGTTGACA-TAACAGAATAAGATAATC---------TT 156 consensus_9122#1 CCTATTCTGTTATGTCAACTTGAAT--ACCAGTATAAAATTGG-TCATTTGGGGATAGTT 290 consensus_9122#2 ATGATCCTGATAAATCATCTCCAAATAACCTTCATTCAGTT---TCACTGCAGTTTGATC 260 * * * * * * * * * consensus_9122#0 TAACAAGACGTGTGTTTAACACTGACCAAGATTATGTGGAATGAAAAGATAAAATCAATA 355 consensus_9122#3 TAAGTAAAC-CACGCATTGCACCTGCTAGTGCCCGGTTGACC----------ATTCCATG 205 consensus_9122#1 AAACTGCAC-TTTTTTTTGCAGGAAACAGCTACCGCTTTCAATCAGTTAACTCGCCTTGT 349 consensus_9122#2 GTCTTACAC-AGAATTATGT--GGACTGGGCATTCTTTTGGGAGTGCCATTATTCTCTTG 317 ** * consensus_9122#0 ATTAAATGAAAACAGAAACTCACCACCTATAAATCTAGCCACTGTTGAATAGTCCGAACA 415 consensus_9122#3 TTCGAATGTGGAC------TTCTCACCTATAAATCTAGCCACTGTTGAATAGTCCGAACA 259 consensus_9122#1 TAATAATATAAACACAGGACAATGTTCTGGTGGTGCAGTGTTATCAGTATTATATGAT-- 407 consensus_9122#2 TATCAATAAATTTACCG---AGTTTTCTTG-AACCTAGTGCTTCGAAAATTCT-CAGT-- 370 *** ** ** ** * consensus_9122#0 AACTGGAAGAATTTTATTTACAGTATCTAGTAAAGCGGGAGTCATTTTTTCATCCACTTT 475 consensus_9122#3 AACTGGAAGAATTTTATTTACAGTATCTAGTAAAGCGGGAGTCATTTTTTCATCCACTTT 319 consensus_9122#1 -TCTTTAAGG--TCTGTATATGGTGTTAAACAATTACATGATTTAATACTTTATCTCCTG 464 consensus_9122#2 -ACGGGAAAG--TATTTGAATGTTGTACAGCAATGCGCCGATC--GTTATGAACTTCCTA 425 * ** * * * * * * * ** * * * * * consensus_9122#0 ANAACAACGGACTGCGTAACGATTTGATAAAGGCAGAGGTT--TGATGTAAACTCCTTGG 533 consensus_9122#3 AAAACAACGGACTGCGTAACGATTTGATAAAGGCAGAGGTT--TGATGTAAACTCCTTGG 377 consensus_9122#1 CGTTCTGCTACCGTACCTTTTTTTAAAATTCTTCANAAATGGATA-TATCGGNGTGTAAT 523 consensus_9122#2 CGTGTGAAGAACTTGTCTATAATAAAGAGCATTCAGTGTTTCTTGGTAAAACTGATCAAG 485 * * ** * * * consensus_9122#0 TTGCCTTGCAA-CACTGTAGTAGATCGCTAACA-CAGCGTATTCCTGGATAGCAT 586 consensus_9122#3 TTGCCTTGCAAGCACTGTAGTAGATCGCTAACAACAGC----------------- 415 consensus_9122#1 TTCTGACCCATATAA-AGAGTTTTTCATTTCAGCTGGATCTATGCCGGATT---- 573 consensus_9122#2 CTCATATGTATGCAA-GCAGTTTATTATTGAAA---------------------- 517 * * * *** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||