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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1046 fasta sequence
[CCGNAGGCCATTAATTCGGCACGCAGGGAAATTCATCTTCATCCGATGAGGAATCTAAAAAGAGTAGAACAAAAGAAAATGGAAAAATTAATTCTACATCTTGTTCTAATGGACATTTAGTCATAAAATTGCAATATCTTAATGAAGAATCACGTTTTGTACATGCATCTCCTACTATGTCTGTTAACCGTTTTAAAAAGAAGCACTTCGTAGATGAAATAATCAATCAGAAAAAGAACGTCAGGCTTATCTTTCAAGGCCGAGAGTTACTGGATGTATTACAAAATGAAGCAAATTTTCATAGTGGCAGAAGACCAAGACGTCAACGATTATGTGACTATGGTGTAACTGATGGCTCAACAATTCACTGTCTTGTTACAACTCCTGTTGTATCATCACCTACCAGGTCATCCTCAGTAAACGATTCCGGAAACACAGGACGTAATTTCAGTTTCCCAAGTTCTTCCAGCGATTCAATGCTAACTGAGTTTGATATAGGTACTAGGCTTATGAAACCACTTTTCGCCTTCCTCCTACTTTTCACTTGGTTTTTTAGGATTGTCTATAGACAATATTTTAATTCAGTTTCTACGTTTGCCTTAGTAACATTAACAGTGTTCTTTTGTGGAGCTGTATTTACTGCTACTCTTGTGAATGTTGTCTCGACAATAGCTTCATTATTTGGTATTTCTAATAGCAATGAACTGTCAAATCAACAATCAGAAAATCCTATCAACCAACCTGACTCACCCGATGTACAAGTTTTAACTGTAACTATGGTTGCACGTCGTGTTCCACCTCANACGTCTGTAAACCAGACAAACAGTACTTCATTTTTTCTTGGGGAATCAGCCCATAATCATCAAATTATTGTTGATGAGCCCATAGTGAGTCTCAACAAGACAGACTACTGCTGAATGTCCTAGCTCTGTTATTTATTTATCATGATTCTTGATTACTTAGATGTTGTTATAGTACTGATATGATTCTCTTTGTTTTCAGAAGAGTCGCATCTTGACATATGATCACTGNCTGTTACTACTATA]
[+] EMBL CD081738 [CCGNAGGCCATTAATTCGGCACGCAGGGAAATTCATCTTCATCCGATGAGGAATCTAAAAAGAGTAGAACAAAAGAAAATGGAAAAATTAATTCTACATCTTGTTCTAATGGACATTTAGTCATAAAATTGCAATATCTTAATGAAGAATCACGTTTTGTACATGCATCTCCTACTATGTCTGTTAACCGTTTTAAAAAGAAGCACTTCGTAGATGAAATAATCAATCAGAAAAAGAACGTCAGGCTTATCTTTCAAGGCCGAGAGTTACTGGATGTATTACAAAATGAAGCAAATTTTCATAGTGGCAGAAGACCAAGACGTCAACGATTATGTGACTATGGTGTAACTGATGGCTCAACAATTCACTGTCTTGTTACAACTCCTGTTGTATCATCACCTACCAGGTCATCCTCAGTAAACGATTCCGGAAACACAGGACGTAATTTCAGTTTCCCAAGTTCTTCCAGCGATTCAATGCTAACTGAGTTTGATATAGGTACTAGGCTTATGAAACCACTTTTCGCCTTCCTCCTACTTTTCACTTGGTTTTTTAGGATTGTCTATAGACAATATTTTAATTCAGTTTCTACGTTTGCCTTAGTAACATTAACAGTGTTCTTTTGTGGAGCTGTATTTACTGCTACTCTTGTGAATGTTGTCTCGACAATAGCTTCATTATTTGGTATTTCTAATAGCAATGAACTGTCAAATCAACAATCAGAAAATCCTATCAACCAACCTGACTCACCCGATGTACAAGTTTTAACTGTAACTATGGTTGCACGTCGTGTTCCACCTCANACGTCTGTAAACCAGACAAACAGTACTTCATTTTTTCTTGGGGAATCAGCCCATAATCATCAAATTATTGTTGATGAGCCCATAGTGAGTCTCAACAAGACAGACTACTGCTGAATGTCCTAGCTCTGTTATTTATTTATCATGATTCTTGATTACTTAGATGTTGTTATAGTACTGATATGATTCTCTTTGTTTTCAGAAGAGTCGCATCTTGACATATGATCACTGNCTGTTACTACTATA]
consensusID : consensus_9123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 807 fasta sequence
[GAGGGGATGTATTACAAAATGAAGCAAATTTTCATAGTCACATAATCGTTGACGTCTTGGTGTAACTGATGGCTCAACAATTCACTGTCTTGTTACAACTCCTGTTGTATCATCACCTACCAGGTCATCCTCAGTAAACGATTCCGGAAACACAGGACGTAATTTCAGTTTCCCAAGTTCTTCCAGCGATTCAATGCTAACTGAGTTTGATATAGGTACTAGGCTTATGAAACCACTTTTCGCCTTCCTCCTACTTTTCACTTGGTTTTTTAGGATTGTCTATAGACAATATTTTAATTCAGTTTCTACGTTTGCCTTAGTAACATTAACAGTGTTCTTTTGTGGAGCTGTATTTACTGCTACTCTTGTGAATGTTGTCTCGACAATAGCTTCATTATTTGGTATTTCTAATAGCAATGAACTGTCAAATCAACAATCAGAAAATCCTATCAACCAACCTGACTCACCCGATGTACAAGTTTTAACTGTAACTATGGTTGCACGTCGTGTTCCACCTCAAACGTCTGTAAACCAGACAAACAGTACTTCATTTTTTCTTGGGGAATCAGCCCATAATCATCAAATTATTGTTGATGAGCCCAATAGTGAGTTTCAAACAAGAACAGACTAACTGCTGAGATGTCCTTAGCTCTGTTTATTTTATTTTATCATTGCATTCTTTGATTTACTTCAGATGTTTGTTATCAGTTACTGAATATGTATTTCTCTTCTGTTTTTTCAAGAGGAGTTCGCCATTCTTGTACATATGATTCAGCTTGTCCTGATTTACTACTTAATTATATGCAT]
[+] EMBL CD083059 [GAGGGGATGTATTACAAAATGAAGCAAATTTTCATAGTCACATAATCGTTGACGTCTTGGTGTAACTGATGGCTCAACAATTCACTGTCTTGTTACAACTCCTGTTGTATCATCACCTACCAGGTCATCCTCAGTAAACGATTCCGGAAACACAGGACGTAATTTCAGTTTCCCAAGTTCTTCCAGCGATTCAATGCTAACTGAGTTTGATATAGGTACTAGGCTTATGAAACCACTTTTCGCCTTCCTCCTACTTTTCACTTGGTTTTTTAGGATTGTCTATAGACAATATTTTAATTCAGTTTCTACGTTTGCCTTAGTAACATTAACAGTGTTCTTTTGTGGAGCTGTATTTACTGCTACTCTTGTGAATGTTGTCTCGACAATAGCTTCATTATTTGGTATTTCTAATAGCAATGAACTGTCAAATCAACAATCAGAAAATCCTATCAACCAACCTGACTCACCCGATGTACAAGTTTTAACTGTAACTATGGTTGCACGTCGTGTTCCACCTCANACGTCTGTAAACCAGACAAACAGTACTTCATTTTTTCTTGGGGAATCAGCCCATAATCATC ]
[-] EMBL CD075472 [ GTATCATCACCTACCAGGTCATCCTCAGTAAACGATTCCGGAAACACAGGACGTAATTTCAGTTTCCCAAGTTCTTCCAGCGATTCAATGCTAACTGAGTTTGATATAGGTACTAGGCTTATGAAACCACTTTTCGCCTTCCTCCTACTTTTCACTTGGTTTTTTAGGATTGTCTATAGACAATATTTTAATTCAGTTTCTACGTTTGCCTTAGTAACATTAACAGTGTTCTTTTGTGGAGCTGTATTTACTGCTACTCTTGTGAATGTTGTCTCGACAATAGCTTCATTATTTGGTATTTCTAATAGCAATGAACTGTCAAATCAACAATCAGAAAATCCTATCAACCAACCTGACTCACCCGATGTACAAGTTTTAACTGTAACTATGGTTGCACGTCGTGTTCCACCTCAAACGTCTGTAAACCAGACAAACAGTACTTCATTTTTTCTTGGGGAATCAGCCCATAATCATCAAATTATTGTTGATGAGCCCAATAGTGAGTTTCAAACAAGAACAGACTAACTGCTGAGATGTCCTTAGCTCTGTTTATTTTATTTTATCATTGCATTCTTTGATTTACTTCAGATGTTTGTTATCAGTTACTGAATATGTATTTCTCTTCTGTTTTTTCAAGAGGAGTTCGCCATTCTTGTACATATGATTCAGCTTGTCCTGATTTACTACTTAATGATATGCAT]
[-] EMBL CD076124 [ CTACTCTTGTTAATGTTGTCTCGACAATAGCTTCATTATTTGGTATTTCTAATAGCAATGAACTGTCAAATCAACAATCAGAAAATCCTATCAACCAACCTGACTCACCCGATGTACAAGTTTTAACTGTAACTATGGTTGCACGTCGTGTTCCCCCTCAAACGTCTGTAAACCAGACAAACAGTACTTCATTTTTTTTTGGGGAATCAGCCCATAATCATCAAATTATTGTTGATGAGCCCAATAGTGAGTTTCAAACAAGAACAGACTAACTGCTGAGATGTCCTTAGCTCTGTTTATTTTATTTTATCATTGCATTCTTTGATTTACTTCAAATGTTTGTTATCAGTTACTGAATATGTATTTTTTTTCTGTTTTTTCAAAAGGAGTTCGCCATTTTTGTACATATGATTCAGCTTGTCCTGATTTACTACTTAATTATATGCAT]
[-] EMBL CD076633 [ TCATTATTTGGTATTTCTAATAGCAATGAACTGTCAAATCAACAATCAGAAAATCCTATCAACCAACCTGACTCACCCGATGTACAAGTTTTAACTGTAACTATGGTTGCACGTCGTGTTCCCCCTCAAACGTCTGTAAACCAGACAAACAGTACTTCATTTTTTCTTGGGGAATCAGCCCATAATCATCAAATTATTGTTGATGAGCCCAATAGTGAGTTTCAAACAAGAACAGACTAACTGCTGAGATGTCCTTAGCTCTGTTTATTTTATTTTATCATTGCATTCTTTGATTTACTTCAGATGTTTGTTATCAGTTACTGAATATGTATTTCTCTTCTGTTTTTTCAAGAGGAGTTCGCCATTCTTGTACATATGATTCAGCTTGTCCTGATTTACTACTTAATTATATGCAT]
[+] EMBL CD192412 [ TGACTCACCCGATGTACAAGTTTTAACTGTAACTATGGTTGCACGTCGTGTTCCACCTCAAACGTCTGTAAACCAGACAAACAGTACTTCATTTTTTCTTGGGGAATCAGCCCATAATCATCAAATTATTGTTGATGAGCCCAATAGTGAGTCTCAAACAAGAACAGAC ]
consensusID : consensus_9123#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 566 fasta sequence
[CTCGNAGCCAANAATTCGGCACGAGGTGAATCCATATGGAACTATTATTGAGGGGATTGGAAATGAATTACTTTTTGTCCTGAGTTGTATGGGCACGATTTTATTTCTTATCGTGGCTTGGATCTCTACAAGAGTTAACTGGGAGTTGATGCCTGTTAGGATAACCTTGCTCCGGCATCTTCATAGCAACCATGATACTGGAGCAGAAACGACAAATGCACCAGGAACTGTAGAACCTGACAACATCGACTCGTCGGGAAATATTTTCGCAGAAAGTTCAGGTTCTAGTTCCGAAGATGAAATCAATTCAGATACATGCGTTCACAAACGTTCATCCGTTCAAACTTCAGTCAGTTTAACTGATCAAAGAAATTCATCTTCATCCGATGAGGAATCTAAAAAGAGTAGAACAAAAGAAAATGGAAAAATTAATTCTACATCTTGTTCTAATGGACATTTAGTCATAAAATTGCAATATCTTAATGAAGAATCACGTTTTGTACATGCATCTCCTACTATGTCTGTTAACCGTTTTAAAAAGAAGCACTTCGTAGATGAAATAATCA]
[+] EMBL CD082529 [CTCGNAGCCAANAATTCGGCACGAGGTGAATCCATATGGAACTATTATTGAGGGGATTGGAAATGAATTACTTTTTGTCCTGAGTTGTATGGGCACGATTTTATTTCTTATCGTGGCTTGGATCTCTACAAGAGTTAACTGGGAGTTGATGCCTGTTAGGATAACCTTGCTCCGGCATCTTCATAGCAACCATGATACTGGAGCAGAAACGACAAATGCACCAGGAACTGTAGAACCTGACAACATCGACTCGTCGGGAAATATTTTCGCAGAAAGTTCAGGTTCTAGTTCCGAAGATGAAATCAATTCAGATACATGCGTTCACAAACGTTCATCCGTTCAAACTTCAGTCAGTTTAACTGATCAAAGAAATTCATCTTCATCCGATGAGGAATCTAAAAAGAGTAGAACAAAAGAAAATGGAAAAATTAATTCTACATCTTGTTCTAATGGACATTTAGTCATAAAATTGCAATATCTTAATGAAGAATCACGTTTTGTACATGCATCTCCTACTATGTCTGTTAACCGTTTTAAAAAGAAGCACTTCGTAGATGAAATAATCA]
[-] EMBL CD179427 [ ATCCATATGGAACTATTATTGAGGGGATTGGAAATGAATTACTTTTTGTCCTCAGTTGTATGGGCACGATTTTATTTCTTATCGTGGCTTGGATCTCTACAAGAGTTAACTGGGAGTTGATGCCTGTTAGGATAACCTTGCTCCGGCATCTTCATAGCAACCATGATACTGGAGCAGAAACGACAAATGCACCAGGAACTGTAGAACCTGACAACATCGACTCGTCGGGAAATATTTTCGCAGAAAGTTCAGGTTCTAGTTCCGAAGATGAAATCAATTCAGATACATGCGTTCACAAACGTTCATCCGTTCAAACTTCAGTCAGTTTAACTGATCAAAGAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9123#0 CCGNAGGCCATTAATTCGGCACGCAGGGAAATTCATCTTCATCCGATGAGGAATCTAAAA 60
consensus_9123#1 ------------------------------------------------------------
consensus_9123#2 ------------------------------------------------------------
consensus_9123#0 AGAGTAGAACAAAAGAAAATGGAAAAATTAATTCTACATCTTGTTCTAATGGACATTTAG 120
consensus_9123#1 ------------------------------------------------------------
consensus_9123#2 ------------------------------------------------------------
consensus_9123#0 TCATAAAATTGCAATATCTTAATGAAGAATCACGTTTTGTACATGCATCTCCTACTATGT 180
consensus_9123#1 ------------------------------------------------------------
consensus_9123#2 ------------------------------------------------------------
consensus_9123#0 CTGTTAACCGTTTTAAAAAGAAGCACTTCGTAGATGAAATAATCAATCAGAAAAAGAACG 240
consensus_9123#1 ------------------------------------------------------------
consensus_9123#2 ------------------------------------------------------------
consensus_9123#0 TCAGGCTTATCTTTCAAGGCCGAGAGTTACTGGATGTATTACAAAATGAAGCAAATTTTC 300
consensus_9123#1 ---------------------------GAGGGGATGTATTACAAAATGAAGCAAATTTTC 33
consensus_9123#2 ------------------------------------------------------------
consensus_9123#0 ATAGTGGCAGAAGACCAAGACGTCAACGATTATGTGACTATGGTGTAACTGATGGCTCAA 360
consensus_9123#1 ATAGTCACATAAT-------CGTTGACGTCT---------TGGTGTAACTGATGGCTCAA 77
consensus_9123#2 ------------------------------------------------------------
consensus_9123#0 CAATTCACTGTCTTGTTACAACTCCTGTTGTATCATCACCTACCAGGTCATCCTCAGTAA 420
consensus_9123#1 CAATTCACTGTCTTGTTACAACTCCTGTTGTATCATCACCTACCAGGTCATCCTCAGTAA 137
consensus_9123#2 ------------------------------------------------------------
consensus_9123#0 ACGATTCCGGAAACACAGGACGTAATTTCAGTTTCCCAAGTTCTTCCAGCGATTCAATGC 480
consensus_9123#1 ACGATTCCGGAAACACAGGACGTAATTTCAGTTTCCCAAGTTCTTCCAGCGATTCAATGC 197
consensus_9123#2 ----------------------------------------------------CTCGNAGC 8
** **
consensus_9123#0 TAACTGAGTTTGATATAGGTACTAGGCTTATGAAACCACTTTTCGCCTTCCTCCTACTTT 540
consensus_9123#1 TAACTGAGTTTGATATAGGTACTAGGCTTATGAAACCACTTTTCGCCTTCCTCCTACTTT 257
consensus_9123#2 CAAN--AATTCGGCACGAGGTGAATCCATATGGAACTATTATTGAGGGGATTGGAAATGA 66
** * ** * * * * * **** *** * * ** * * *
consensus_9123#0 TCACTTGGTTTTTTAGGATTGTCTATAGACAATATTTTAATTCAGTTTCTACGTTTG--C 598
consensus_9123#1 TCACTTGGTTTTTTAGGATTGTCTATAGACAATATTTTAATTCAGTTTCTACGTTTG--C 315
consensus_9123#2 ATTACTTTTTGTCCTGAGTTGT--ATGGGCACGATTTTATTTCTTATCGTGGCTTGGATC 124
* ** * * **** ** * ** ****** *** * * ** * *
consensus_9123#0 CTTAGTAACATTAACAGTGTTCTTTTGTGGAGCTGTATTTACTGCTACTCTTGTGAATGT 658
consensus_9123#1 CTTAGTAACATTAACAGTGTTCTTTTGTGGAGCTGTATTTACTGCTACTCTTGTGAATGT 375
consensus_9123#2 TCTACAAGAGTTAACTGGGAGTTGATGCCTGTTAGGAT--AACCTTGCTCCGGC-ATCTT 181
** * ***** * * * ** * ** * * *** * * *
consensus_9123#0 TGTCTCGACAATAGCTTCATTATTTGGTATTTCTAATA-GCAATGAACTGTCAAATCAAC 717
consensus_9123#1 TGTCTCGACAATAGCTTCATTATTTGGTATTTCTAATA-GCAATGAACTGTCAAATCAAC 434
consensus_9123#2 CATAGCAACCATGA-TACTGGAGCAGAAACGACAAATGCACCAGGAACTGTAGAACCTGA 240
* * ** ** * * * * * * *** * * ******* ** *
consensus_9123#0 AATCAGAAAATCCTATCAACCAACCTGACTCACCCGATGTACAAGTTTTAACTGTAACTA 777
consensus_9123#1 AATCAGAAAATCCTATCAACCAACCTGACTCACCCGATGTACAAGTTTTAACTGTAACTA 494
consensus_9123#2 CAACATCGACTC--GTCGGGAAATATT-TTCGCAGAAAGTTCAGGTTCTAGTTCCGAAGA 297
* ** * ** ** ** * ** * * ** ** *** ** * * *
consensus_9123#0 TGGTTGCACGTCGTGTTCCACCTCANACGTCTGTAAACCAGACAAACAGTACTTCATTTT 837
consensus_9123#1 TGGTTGCACGTCGTGTTCCACCTCAAACGTCTGTAAACCAGACAAACAGTACTTCATTTT 554
consensus_9123#2 TGAAATCAATTCAGATACATGCGTTCACAAACGTTCATCCGTTCAAACTTCAGTCAGTTT 357
** ** ** * * * ** ** * * * ** * *** ***
consensus_9123#0 TTCTTGGGGAATCAGCCCATAATCATCAAATTATTGTTGATGAGCCCA--TAGTGAGTCT 895
consensus_9123#1 TTCTTGGGGAATCAGCCCATAATCATCAAATTATTGTTGATGAGCCCAA-TAGTGAGTTT 613
consensus_9123#2 AACTGATCAAAGAAATTCATCTTCATCCGAT-------GAGGAATCTAAAAAGAGTAGAA 410
** ** * *** ***** ** ** ** * * ** *
consensus_9123#0 CAA-CAAGA-CAGACTA-CTGCTGA-ATGTCCT-AGCTC-TGTT------ATTTATTTAT 943
consensus_9123#1 CAAACAAGAACAGACTAACTGCTGAGATGTCCTTAGCTC-TGTTTATTTTATTTTATCAT 672
consensus_9123#2 CAAAAGAAAATGGAAAAATTAATTCTACATCTTGTTCTAATGGACATTTAGTCATAAAAT 470
*** * * ** * * * * ** * ** ** * **
consensus_9123#0 CATGATTCTTGATT-ACTT-AGATGTT-GTTATAG--TACTGA---TATGATTCTCTT-T 994
consensus_9123#1 TGCATTCTTTGATTTACTTCAGATGTTTGTTATCAGTTACTGAATATGTATTTCTCTTCT 732
consensus_9123#2 TGCAATATCTTAATGAAGAATCACGTTTTGTACATGCATCTCCTACTATGTCTGTTAACC 530
* * * * * * *** ** ** * * * *
consensus_9123#0 GTTTTCAGAAGAG----TCGCA--TCTTG-ACATATGATCA---CTGNCTG---TTACTA 1041
consensus_9123#1 GTTTTTTCAAGAGGAGTTCGCCATTCTTGTACATATGATTCAGCTTGTCCTGATTTACTA 792
consensus_9123#2 GTTTTAAAAAGAA------GCACTTCGTAGATGAAATAATCA------------------ 566
***** **** ** ** * * * *
consensus_9123#0 CTATA---------- 1046
consensus_9123#1 CTTAATTATATGCAT 807
consensus_9123#2 ---------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||