cluster # 9128

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Schistosoma mansoni
cluster # 9128 cluster # 9128 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9128#0 length = 943 sequences # 7

consensus_9128#1 length = 501 sequences # 1

consensusID : consensus_9128#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 943
fasta sequence

                              [CATGGTCAACATTAGTTACAGGATCCGAACAACACTATTGTGGTGCAGCTTTAATTAAACCTGATTGGATAATTACAGCA-GCGCATTGTTTATATGACAGTGGAGAAGAGGATGAAATTATCAGCTATCTACATCCAAAAATGTGGCATGTACGAATGGCAACTGAAAAACTAAGTCCTGGAATCTTAGAACGTTTAAAAGGTGCTTTCAATCGAGTCTTCAATTCCATTTTTGGACATGTTAAACTTCAAACATTTTATCACGTAGAGGAAATATTTCATCATCCAAAATATGAGCCTGGAAATTTGGAGTATGATATTGCCTTATTTAAACTCAAAGAAACTCCAGTTTTGTGGAAAATCAATCATTTAGATTTAATAGAATTGCCGGATAAAAAAAATGTTGAGGAATGGCCCAAACCTAATCAGAAATGTGTAGCTGTTGGTTGGGGATGTAGTTTTGTCGACGGACCACCGACGCTGAAAATTCAAGCTGTAGAACTCCCAGTTCTA-CAATCAAAAACATGCATGTCAATGTATTCGGCCTATATTAATTTAA-C-GGAAGAACATGAATTCTGTGCAGGTTACCATAACTTTGGTAAAGGTGTATGCCCAGGTGACAGTGGTGGACCGTTGGTTTGTGAAGACGATGGCGAATATAAATTAGCTGGTATCGTTTCAGCAACACACTCCAAACTGCCCGCTGATTATCCGGCAATATTCACGCGCGTTTCTTACTTCACTAAATGGATAAATGATGTAATCAGGGAGAATGGATATAAGAAAAAACCGAATGGTCTATTTTCATTTTTAAAACTGCATAACTGAAAATTACTATTATTGTCAATTCTGTTACTACATGTCAATTTCCTTTTAAACAAAAGAAATTAGATGTTAGCTGTTCA-------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AI975323             [CATGGTCAACATTAGTTACAGGATCCGAACAACACTATTGTGGTGCAGCTTTAATTAAACCTGATTGGATAATTACAGCA GCGCATTGTTTATATGACAGTGGAGAAGAGGATGAAATTATCAGCTATCTACATCCAAAAATGTGGCATGTACGAATGGCAACTGAAAAACTAAGTCCTGGAATCTTAGAACGTTTAAAAGGTGCTTTCAATCGAGTCTTCAATTCCATTTTTGGACATGTTAAACTTCAAACATTTTATCACGTAGAGGAAATATTTCATCATCCAAAATATGAGCCTGGAAATTTGGAGTATGATATTGCCTTATTTAAACTCAAAGAAACTCCAGTTTTGTGGAAAATCAATCATTTAGATTTAATAGAATTGCCGGATAAAAAAAATGTTGAGGAATGGCCCAAACCTAATCAGAAATGTGTAGCTGTTGGTTGGGGATGTAGTTTTGTCGACGGACCACCGACGCTGAAAATTCAAGCTGTAGAACTCCCAGTTCTA CAATCAAAAACATGCATGTCAATGTATTCGGCCTATATTAATTTAA C GGAAGAACATGAATTCTGTGCAGGTTACCATAACTTTGGTAAAGGTGTATG                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD180980             [                                  CTATTGTGGTGCAGCTTTAATTAAACCTGATTGGATAATTACAGCATTTTCATTGTTTATATGACAGTGGAGAAGAGGATGAAATTATCAGCTATCTACATCCAATAATGGGGCATGTACGAATGGCAACTGAAAAACTAAGTCCTGGAATCTTAGAACGTTTAAAAGGTGCTTTCAATCGAGTCTTCAATTCCATTCTTGGACATGTTAAACTTCAAACATTTTATCACGTACAGGAAATATTTCATCATCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AF128877             [                                                                                                                                                                                              aggGTTTAAAAGGTGCTTTCAATCGAGTCTTCAATTCCATTTTTGGACATGTTAAACTTCAAACATTTTATCACGTAGAGGAAATATTTCATCATCCAAAATATGAGCCTGGAAATTTGGAGTATGATATTGCCTTATTTAAACTCAAAGAAACTCCAGTTTTGTGGAAAATCAATCATTTAGATTTAATAGAATTGCCGGATAAAAAAAATGTTGAGGAATGGCCCAAACCTAATCAGAAATGTGTAGCTGTTGGTTGGGGATGTAGTTTTGTCGACGGACCACCGACGCTGAAAATTCAAGCTGTAGAACTCCCAGTTCTA CAATCAAAAACATGCATGTCAATGTATTCGGCCTATATTAATTTAA C GGAAGAACATGAATTCTGTGCAGGTTACCATAACTTTGGTAAAGGTGTATGCCCAGGTGACAGTGGTGGACCGTTGGTTTGTGAAGACGATGGCGAATATAAATTAGCTGGTATCGTTTCAGCAACACACTCCAAACTGCCCGCTGATTATCCGGCAATATTCACGCGCGTTTCTTACTTCACTAAATGGATAAATGATGTAATCAGGGAGAATGGATATAAGAAAAAACCGAATGGTCTATTTTCATTTTTAAAACTGCATAACTGAAAATTACTATTATTGTCAATTCTGTTACTACATGTCAATTTCCTTTTAAACAAAAGAAATTAGATGTTAGCTGTTCA       AAAAAAAAAAAAAA                         ]
[-] EMBL AI395060             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCCCAGTT TACCAATCAAAAACCTGCATGTCAATGTATTCGGCCTATATTAATTTAACC GGAAGAACATGAATTCTGTCCAGGTTACCATAACTTTGGTAAAGGTGTATGCCCAGGTGACAGTGGTGGACCGTTGGTTTGTGAAGACGATGGCGAATATAAATTAGCTGGTATCGTTTCAGCAACACACTCCAAACTGCCCGCTGATTATCCGGCAATATTCACGCGCGTTTCTTACTTCACTAAATGGATAAATGATGTAATCAGGGAGAATGGATATAAGAAAAAACCGAATGGTCTATTTTCATTTTTAAAACTGCATAACTGAAAATTACTATTATTGTCAATTCTGTTACTACATGTCAATTTCCTTTTAAACAAAAGAAATTAGATGTTAGCTGTTCA       AAAAAAAAAAAAAAA                        ]
[-] EMBL AI395020             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATTTAA CGGGAAGAACATGAATTCTGTGCAGGTTACCATAACTTTGGTAAAGGTGTATGCCCAGGTGACAGTGGTGGACCGTTGGTTTGTGAAGACGATGGCGAATATAAATTAGCTGGTATCGTTTCAGCAACACACTCCAAACTGCCCGCTGATTATCCGGCAATATTCACGCGCGTTTCTTACTTCACTAAATGGATAAATGATGTAATCAGGGAGAATGGATATAAGAAAAAACCGAATGGTCTATTTTCATTTTTAAAACTGCATAACTGAAAATTACTATTATTGTCAATTCTGTTACTACATGTCAATTTCCTTTTAAACAAAAGAAATTAGATGTTAGCTGTTCA       GCCATGAAAAAAAAAAAAAAA                  ]
[-] EMBL AI395408             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GAACATGAATCTTGTGCAGGTTACCATAACTTTGTAAAAGGTGTATGCCCAGGTGACAGTGGTGGACCGTTGGTTTGTGAAGACGATGGCGAATATAAATTAGCTGGTATCGTTTCAGCAACACACTCCAAACTGCCCGCTGATTATCCGGCAATATTCACGCGCGTTTCTTACTTCACTAAATGGATAAATGATGTAATCAGGGAGAATGGATATAAGAAAAAACCGAATGGTCTATTTTCATTTTTAAAACTGCATAACTGAAAATTACTATTATTGTCAATTCTGTTACTACATGTCAATTTCCTTTTAAACAAAAGAAATTAGATGTTAGCTGTTCA       AAAAAAAAAAAAAAA                        ]
[-] EMBL AI395461             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTGTGCAGGTTCCCATAACTTTGGTAAAGGTGTATGCCCAGGTGACAGTGGTGGACCGTTGGTTTGTGAAGACGATGGCGAATATAAATTAGCTGGTATCGTTTCAGCAACACACTCCAAACTGCCCGCTGATTATCCGGCAATATTCACGCGCGTTTCTTACTTCCCTAAATGGATAAATGATGTAATCAGGGAGAATGGATTTAAGAAAAAACCGAATGGTCTATTTTCATTTTTAAAACTGCATAACTGAAAATTACTATTATTGTCAATTCTGTTACTACATGTCAATTTCCTTTTAAACAAAAGAAATTAGATGTTAGCTGTTCAGCCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9128#0
CATGGTCAACATTAGTTACAGGATCCGAACAACACTATTGTGGTGCAGCTTTAATTAAAC
CTGATTGGATAATTACAGCAGCGCATTGTTTATATGACAGTGGAGAAGAGGATGAAATTA
TCAGCTATCTACATCCAAAAATGTGGCATGTACGAATGGCAACTGAAAAACTAAGTCCTG
GAATCTTAGAACGTTTAAAAGGTGCTTTCAATCGAGTCTTCAATTCCATTTTTGGACATG
TTAAACTTCAAACATTTTATCACGTAGAGGAAATATTTCATCATCCAAAATATGAGCCTG
GAAATTTGGAGTATGATATTGCCTTATTTAAACTCAAAGAAACTCCAGTTTTGTGGAAAA
TCAATCATTTAGATTTAATAGAATTGCCGGATAAAAAAAATGTTGAGGAATGGCCCAAAC
CTAATCAGAAATGTGTAGCTGTTGGTTGGGGATGTAGTTTTGTCGACGGACCACCGACGC
TGAAAATTCAAGCTGTAGAACTCCCAGTTCTACAATCAAAAACATGCATGTCAATGTATT
CGGCCTATATTAATTTAACGGAAGAACATGAATTCTGTGCAGGTTACCATAACTTTGGTA
AAGGTGTATGCCCAGGTGACAGTGGTGGACCGTTGGTTTGTGAAGACGATGGCGAATATA
AATTAGCTGGTATCGTTTCAGCAACACACTCCAAACTGCCCGCTGATTATCCGGCAATAT
TCACGCGCGTTTCTTACTTCACTAAATGGATAAATGATGTAATCAGGGAGAATGGATATA
AGAAAAAACCGAATGGTCTATTTTCATTTTTAAAACTGCATAACTGAAAATTACTATTAT
TGTCAATTCTGTTACTACATGTCAATTTCCTTTTAAACAAAAGAAATTAGATGTTAGCTG
TTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_9128#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [CAAGCTGTGGAACACCCAGTTCTACAATCAATAACATGCATGGCACTGTCTCCGGCCTATATTAATTTAACGGAAGAACATGAATTCTGTGCAGGTTGCCATAACATATTGGTACAGGAGTACTATCCCACGTAGCGTTGGAATGTGATTTGGAAAAACTGTTATAGTTATTGAATAACAAATTTACAAGACCTGACTCGGACTAATTTTTAGTGAAGTAGCGTACGCCTAAGTTTCAACCGAGATTATAAGCACTGTCTCTGGAGTAACGTGAACGAATTCGGAATCTTAGACTCCACTGTATCATGTATGCTGCTTGGTCTAGCTTTTTTCCTGGNNNNANGNANCCTANTTGTTGTTGTGTCTTTAAGCACGACTGGTTATCACATGACTTAGTCACCAATCGAAATACAACTTATACAATCTTATCAGTGGGCCAAACCAATGACGTTCGACCGGTATGAGCAGCCTAGCGTCTTTGTTGGTCCTATCCCTCCAGCC]

[+] EMBL CD200993             [CAAGCTGTGGAACACCCAGTTCTACAATCAATAACATGCATGGCACTGTCTCCGGCCTATATTAATTTAACGGAAGAACATGAATTCTGTGCAGGTTGCCATAACATATTGGTACAGGAGTACTATCCCACGTAGCGTTGGAATGTGATTTGGAAAAACTGTTATAGTTATTGAATAACAAATTTACAAGACCTGACTCGGACTAATTTTTAGTGAAGTAGCGTACGCCTAAGTTTCAACCGAGATTATAAGCACTGTCTCTGGAGTAACGTGAACGAATTCGGAATCTTAGACTCCACTGTATCATGTATGCTGCTTGGTCTAGCTTTTTTCCTGGNNNNANGNANCCTANTTGTTGTTGTGTCTTTAAGCACGACTGGTTATCACATGACTTAGTCACCAATCGAAATACAACTTATACAATCTTATCAGTGGGCCAAACCAATGACGTTCGACCGGTATGAGCAGCCTAGCGTCTTTGTTGGTCCTATCCCTCCAGCC]




>consensus_9128#1
CAAGCTGTGGAACACCCAGTTCTACAATCAATAACATGCATGGCACTGTCTCCGGCCTAT
ATTAATTTAACGGAAGAACATGAATTCTGTGCAGGTTGCCATAACATATTGGTACAGGAG
TACTATCCCACGTAGCGTTGGAATGTGATTTGGAAAAACTGTTATAGTTATTGAATAACA
AATTTACAAGACCTGACTCGGACTAATTTTTAGTGAAGTAGCGTACGCCTAAGTTTCAAC
CGAGATTATAAGCACTGTCTCTGGAGTAACGTGAACGAATTCGGAATCTTAGACTCCACT
GTATCATGTATGCTGCTTGGTCTAGCTTTTTTCCTGGNNNNANGNANCCTANTTGTTGTT
GTGTCTTTAAGCACGACTGGTTATCACATGACTTAGTCACCAATCGAAATACAACTTATA
CAATCTTATCAGTGGGCCAAACCAATGACGTTCGACCGGTATGAGCAGCCTAGCGTCTTT
GTTGGTCCTATCCCTCCAGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9128#0      CATGGTCAACATTAGTTACAGGATCCGAACAACACTATTGTGGTGCAGCTTTAATTAAAC 60
consensus_9128#1      ------------------------------------------------------------
                                                                                  

consensus_9128#0      CTGATTGGATAATTACAGCAGCGCATTGTTTATATGACAGTGGAGAAGAGGATGAAATTA 120
consensus_9128#1      ------------------------------------------------------------
                                                                                  

consensus_9128#0      TCAGCTATCTACATCCAAAAATGTGGCATGTACGAATGGCAACTGAAAAACTAAGTCCTG 180
consensus_9128#1      ------------------------------------------------------------
                                                                                  

consensus_9128#0      GAATCTTAGAACGTTTAAAAGGTGCTTTCAATCGAGTCTTCAATTCCATTTTTGGACATG 240
consensus_9128#1      ------------------------------------------------------------
                                                                                  

consensus_9128#0      TTAAACTTCAAACATTTTATCACGTAGAGGAAATATTTCATCATCCAAAATATGAGCCTG 300
consensus_9128#1      ------------------------------------------------------------
                                                                                  

consensus_9128#0      GAAATTTGGAGTATGATATTGCCTTATTTAAACTCAAAGAAACTCCAGTTTTGTGGAAAA 360
consensus_9128#1      ------------------------------------------------------------
                                                                                  

consensus_9128#0      TCAATCATTTAGATTTAATAGAATTGCCGGATAAAAAAAATGTTGAGGAATGGCCCAAAC 420
consensus_9128#1      ------------------------------------------------------------
                                                                                  

consensus_9128#0      CTAATCAGAAATGTGTAGCTGTTGGTTGGGGATGTAGTTTTGTCGACGGACCACCGACGC 480
consensus_9128#1      ------------------------------------------------------------
                                                                                  

consensus_9128#0      TGAAAATTCAAGCTGTAGAACTCCCAGTTCTACAATCAAAAACATGCATGTCAATGTATT 540
consensus_9128#1      --------CAAGCTGTGGAACACCCAGTTCTACAATCAATAACATGCATGGCACTGTCTC 52
                              ******** **** ***************** ********** ** *** * 

consensus_9128#0      CGGCCTATATTAATTTAACGGAAGAACATGAATTCTGTGCAGGTTACCATAACTT--TGG 598
consensus_9128#1      CGGCCTATATTAATTTAACGGAAGAACATGAATTCTGTGCAGGTTGCCATAACATATTGG 112
                      ********************************************* ******* *  ***

consensus_9128#0      TAAAGGTGTATGCCCAGGTGACAGTGGTGGACCGTTGGTTTGTGAAGACGATGGCGAATA 658
consensus_9128#1      TACAGGAGTACTATCCCACG-TAGCGTTGGAATGT-GATTTGGAAAAACTGTTATAGTTA 170
                      ** *** ***    *    *  ** * ****  ** * ****  ** **  *      **

consensus_9128#0      TAAATTAGCTGGTATCGTTTCAGCAACACACTC---CAAACTGCCCGCTGATTATCCGGC 715
consensus_9128#1      TTGAATAACAAAT----TTACAAGACCTGACTCGGACTAATTTTTAGTGAAGTAGCGTAC 226
                      *  * ** *   *    ** **  * *  ****   * ** *    *   * ** *   *

consensus_9128#0      ----AATATTCACGCGCGTTTCTTACTTCACTAAATGGATAAA--TGATGTAATCAGGGA 769
consensus_9128#1      GCCTAAGTTTCAACCGAGATTATAAGCACTGTCTCTGGAGTAACGTGAACGAATTCGGAA 286
                          **  ****  ** * ** * *   *  *   ****  **  ***   ***  ** *

consensus_9128#0      GAATGGA------TATAAGAAAAA-ACCGAATGGTCTATTTTCATTTTTAAAACTGCATA 822
consensus_9128#1      TCTTAGACTCCACTGTATCATGTATGCTGCTTGGTCTAGCTTTTTTCCTGGNNNNANGNA 346
                         * **      * **  *   *  * *  *******  **  **  *          *

consensus_9128#0      ACTGAAA-ATTACTATTATTGTCAATTCT----GTTACTACATG--TCAATTTCCTTTT- 874
consensus_9128#1      NCCTANTTGTTGTTGTGTCTTTAAGCACGACTGGTTATCACATGACTTAGTCACCAATCG 406
                       *  *    **  * *   * * *   *     ****  *****  * * *  **  *  

consensus_9128#0      AAACAAAAGAAATTAGATGTTAGCTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 934
consensus_9128#1      AAATACAACTTATACAATCTTATCAGTGGGCCAAACCAATGACGTTCGACCGGTATGAGC 466
                      *** * **   **   ** *** * **     ***  **  *      *     *  *  

consensus_9128#0      AAAAAAAAA-------------------------- 943
consensus_9128#1      AGCCTAGCGTCTTTGTTGGTCCTATCCCTCCAGCC 501
                      *    *