cluster # 9130

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Schistosoma mansoni
cluster # 9130 cluster # 9130 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9130#0 length = 764 sequences # 7

consensus_9130#1 length = 473 sequences # 1

consensusID : consensus_9130#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 764
fasta sequence

                              [ACCGGACGTTAGCACCCGATGTCTGTCTGCCGTATATCACTTTGCGGTATTCGGAGTTTGCTATCGCGAGGTAGATCGCAATGACCCCCTCAACGATTACAGTGCTCTACCCCCGCAAGTGTCCGTACGACGCACTACCTAAATAGTTTTCGGGGAGAACCAGCTATCTCCAGATTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAACGTTAGTGGGTTCGGACCTCCAGTACCTGTTACGGCACCTTCATCCTGGCCATGGATAGATCATCTGGTTTCGGGTCTACGCCGGGCGACTGATTCGCCCTTATCAGACTCGCTNTCGCTACGACTCCCCTATTCGGTTAAGCTCGCCACACAACGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCCACAAGGAGGCTCCCACTGTTTGTATGCATGCGGTTTCAGGTTCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATCACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATGTTCAGACAAGGTTTCACGTGCCCCGCCCTACTTTTCGCTAACTTAGTACCACGGATCTGTTTTCGAATACGGGGCTATCACCCACTACGGCCGGACTTTCCATTCCGTTCTTCTAACAGTTCCGCTATCACTAGCAGGCTCTTCCCCGTTCGCTCGCCACTACTTGGGGAATCTCGGCTGATTTCTTTTCCTCCGGCTA]

[+] EMBL CD086482             [ACCGGACGTTAGCACCCGATGTCTGTCTGCCGTATATCACTTTGCGGTATTCGGAGTTTGCTATCGCGAGGTAGATCGCAATGACCCCCTCAACGATTACAGTGCTCTACCCCCGCAAGTGTCCGTACGACGCACTACCTAAATAGTTTTCGGGGAGAACCAGCTATCTCCAGATTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAACGTTAGTGGGTTCGGACCTCCAGTACCTGTTACGGCACCTTCATCCTGGCCATGGATAGATCATCTGGTTTCGGGTCTACGCCGGGCGACTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD086526             [   GGACGTTAGCACCCGATGTCTGTCTGCCGTATATCACTTTGCGGTATTCGGAGTTTGCTATCGCGAGGTAGATCGCAATGACCCCCTCAACGATTACAGTGCTCTACCCCCGCAAGTGTCCGTACGACGCACTACCTAAATAGTTTTCGGGGAGAACCAGCTATCTCCAGATTTGTTTAACCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD086489             [   GGACGTTAGCACCCGATGTCTGTCTGCCGTATATCACTTTGCGGTATTCGGAGTTTGCTATCGCGAGGTAGATCGCAATGACCCCCTCAACGATTACAGTGCTCTACCCCCGCAAGTGTCCGTACGACGCACTACCTAAATAGTTTTCGGGGAGAACCAGCTATCTCCAGATTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAACGTTAGTGGGTTCGGACCTCCAGTACCTGTTACGGCACCTTCATCCTGGCCATGGATAGATCATCTGGTTTCGGGTCTACGCCGTGCGACTGATTCGCCCTTATCAGACTCGCTNTCGCTACGACTCCCCTATTCGGTTAAGCTCGCCACACAACGTAAGTCGCTGACCCATTAT                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD086481             [   GGACGTTAGCACCCGATGTCTGTCTGCCGTATATCACTTTGCGGTATTCGGAGTTTGCTATCGCGAGGTAGATCGCAATGACCCCCTCAACGATTACAGTGCTCTACCCCCGCAAGTGTCCGTACGACGCACTACCTAAATAGTTTTCGGGGAGAACCAGCTATCTCCAGATTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAACGTTAGTGGGTTCGGACCTCCAGTACCTGTTACGGCACCTTCATCCTGGCCATGGATAGATCATCTGGTTTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD086477             [   GGACGTTAGCACCCGATGTCTGTCTGCCGTATATCACTTTGCGGTATTCGGAGTTTGCTATCGCGAGGTAGATCGCAATGACCCCCTCAACGATTACAGTGCTCTACCCCCGCAAGTGTCCGTACGACGCACTACCTAAATAGTTTTCGGGGAGAACCAGCTATCTCCAGATTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAACGTTAGTGGGTTCGGACCTCCAGTACCTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD086528             [   GGACGTTANCACCCGATGTCTGTCTGCCGTATATCACTTTGCGGTATTCGGAGTTTGCTATCGCGAGGTAGATCGCAATGACCCCCTCAACGATTACAGTGCTCTACCCCCGCAAGTGTCCGTACGACGCACTACCTAAATAGTTTTCGGGGAGAACCAGCTATCTCCAGATTTGTTTAACCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAACGTTAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD089248             [                                                                                                                                                                                                                                                                                                                                CCCTTATCAGACTCGCTTTCGCTACGCCTCCCCTATTCGGTTAAGCTCGCAACACAACGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCCACAAGGAGGCTCCCACTGTTTGTATGCATGCGGTTTCAGGTTCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATCACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATGTTCAGACAAGGTTTCACGTGCCCCGCCCTACTTTTCGCTAACTTAGTACCACGGATCTGTTTTCGAATACGGGGCTATCACCCACTACGGCCGGACTTTCCATTCCGTTCTTCTAACAGTTCCGCTATCACTAGCAGGCTCTTCCCCGTTCGCTCGCCACTACTTGGGGAATCTCGGCTGATTTCTTTTCCTCCGGCTA]




>consensus_9130#0
ACCGGACGTTAGCACCCGATGTCTGTCTGCCGTATATCACTTTGCGGTATTCGGAGTTTG
CTATCGCGAGGTAGATCGCAATGACCCCCTCAACGATTACAGTGCTCTACCCCCGCAAGT
GTCCGTACGACGCACTACCTAAATAGTTTTCGGGGAGAACCAGCTATCTCCAGATTTGTT
TAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAACGTTAGTGGGTTCGGAC
CTCCAGTACCTGTTACGGCACCTTCATCCTGGCCATGGATAGATCATCTGGTTTCGGGTC
TACGCCGGGCGACTGATTCGCCCTTATCAGACTCGCTNTCGCTACGACTCCCCTATTCGG
TTAAGCTCGCCACACAACGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCC
ACAAGGAGGCTCCCACTGTTTGTATGCATGCGGTTTCAGGTTCTATTTCACTCCCCTCCC
GGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATCACGAGTATTT
AGCCTTGGAGGATGGTCCCCCCATGTTCAGACAAGGTTTCACGTGCCCCGCCCTACTTTT
CGCTAACTTAGTACCACGGATCTGTTTTCGAATACGGGGCTATCACCCACTACGGCCGGA
CTTTCCATTCCGTTCTTCTAACAGTTCCGCTATCACTAGCAGGCTCTTCCCCGTTCGCTC
GCCACTACTTGGGGAATCTCGGCTGATTTCTTTTCCTCCGGCTA

consensusID : consensus_9130#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [CGAACCGCCATACTGGATTTCACTTAAATGACCCCGCGCCATATTGGAGTGGGGCCAAAAGATTAAGATAATTAAGCTATGAGCAAAGTCTCATTTCGAGCTCGACAAATAGATTTTAACAAACCCTTACCTATTCTGAAGCATGGTTCTGAATTGTTCCTTGAAATCAGTGAAAATGCACTGGTCAATCGTGGTGTTCCACAGATTCCCAGCGGGATGGAGAAAGAGGAGGAAAATGTAATAAAATTTAGCCCTTTTATGTAGTAATACGATGTATGTTATTGTCCTTGTGTCTCTAATTTTGGGTTGTTTACTTGGTTATTAGGAGAAGTGGTTCGTGAACTAATGTCGTTTTTTAACTTTCCCCACCAGGAACATCACTTTCTGGAGGTTATTCAGGCCCTGCAACTCCGTACTGACTCAGATGTTAAAATACCTGTTCCTGAGATAATTGACAAAGAGAATGATTATAA]

[+] EMBL CD188679             [CGAACCGCCATACTGGATTTCACTTAAATGACCCCGCGCCATATTGGAGTGGGGCCAAAAGATTAAGATAATTAAGCTATGAGCAAAGTCTCATTTCGAGCTCGACAAATAGATTTTAACAAACCCTTACCTATTCTGAAGCATGGTTCTGAATTGTTCCTTGAAATCAGTGAAAATGCACTGGTCAATCGTGGTGTTCCACAGATTCCCAGCGGGATGGAGAAAGAGGAGGAAAATGTAATAAAATTTAGCCCTTTTATGTAGTAATACGATGTATGTTATTGTCCTTGTGTCTCTAATTTTGGGTTGTTTACTTGGTTATTAGGAGAAGTGGTTCGTGAACTAATGTCGTTTTTTAACTTTCCCCACCAGGAACATCACTTTCTGGAGGTTATTCAGGCCCTGCAACTCCGTACTGACTCAGATGTTAAAATACCTGTTCCTGAGATAATTGACAAAGAGAATGATTATAA]




>consensus_9130#1
CGAACCGCCATACTGGATTTCACTTAAATGACCCCGCGCCATATTGGAGTGGGGCCAAAA
GATTAAGATAATTAAGCTATGAGCAAAGTCTCATTTCGAGCTCGACAAATAGATTTTAAC
AAACCCTTACCTATTCTGAAGCATGGTTCTGAATTGTTCCTTGAAATCAGTGAAAATGCA
CTGGTCAATCGTGGTGTTCCACAGATTCCCAGCGGGATGGAGAAAGAGGAGGAAAATGTA
ATAAAATTTAGCCCTTTTATGTAGTAATACGATGTATGTTATTGTCCTTGTGTCTCTAAT
TTTGGGTTGTTTACTTGGTTATTAGGAGAAGTGGTTCGTGAACTAATGTCGTTTTTTAAC
TTTCCCCACCAGGAACATCACTTTCTGGAGGTTATTCAGGCCCTGCAACTCCGTACTGAC
TCAGATGTTAAAATACCTGTTCCTGAGATAATTGACAAAGAGAATGATTATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9130#0      ACCGGACGTTAGCACCCGATGTCTGTCTGCCGTATATCACTTTGCGGTATTCGGAGTTTG 60
consensus_9130#1      --------------------------------CGAACCGCCATACTGGATTTCACTTAAA 28
                                                         * * *  * * * ***     *   

consensus_9130#0      CTATCGCGAGGTAGATCGCAATGACCCCCTCAACGATTACAGTGCTCTACCCCCGCAAGT 120
consensus_9130#1      TGACCCCGCGCCATATTGGAGTGGGGCCA--AAAGATTAAGATAATTAAGCTATGAGCAA 86
                        * * ** *  * ** * * **   **   ** *****   *  *  * *   *     

consensus_9130#0      GTCCGTACGACGCACTACCTAAATAGTTTTCGGGGAGAACC-AGCTATCTCCAGATTTGT 179
consensus_9130#1      AGTCTCATTTCGAGCTCGACAAATAGATTTTAACAAACCCTTACCTATTCTGAAGCATGG 146
                         *  *   **  **    ****** ***     *   *  * ****    *    ** 

consensus_9130#0      TTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAACGTTAGTGGGTT-CGG 238
consensus_9130#1      TTCTGAATTGTTCCTTGAAATCAGTGAAAATGC--ACTGGTCAATCGTGGTGTTCCACAG 204
                      **     **   ** *     ***   *    *  ***  ****   * ***     * *

consensus_9130#0      ACCTCCAGTACCTGTTACGGCACCTTCATCCTGGCCATGGATAGATCATCTGGTTTCGGG 298
consensus_9130#1      ATTCCCAG---------CGGGA--TGGAGAAAGAGGAGGAAAATGTAATAAAATTTAGCC 253
                      *   ****         *** *  *  *    *   * * * *  * **    *** *  

consensus_9130#0      TCTACGCCGGGCGACTGATTCGCCCTTATCAGACTCGCTNTCGCTACGACTCCCCTATTC 358
consensus_9130#1      CTTTTATGTAGTAATACGATGTATGTTATTGTCCTTG-TGTCTCTAATTTTGGGTTGTTT 312
                        *       *  *     *     ****    ** * * ** ***    *    * ** 

consensus_9130#0      GGTTAAGCTCGCCACACAACGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC 418
consensus_9130#1      ACTTGG--TTATTAGGAGAAGTGGTTCGTGAACTAATGTCGT-----TTTTTAACTTTCC 365
                        **    *    *    * **   ***   **  **           *    * *  **

consensus_9130#0      CCACAAGGAGGCTCCCACTGTTTGTATGC-ATGCGGTTTCAGGTTCTATTTCACTCCCCT 477
consensus_9130#1      CCACCAGGAACATC--ACTTTCTGGAGGTTATTCAGGCCCTG---CAACTCCGTACTGAC 420
                      **** ****   **  *** * ** * *  ** * *   * *   * * * *   *    

consensus_9130#0      CCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATCACGAGTA 537
consensus_9130#1      TCAGATGTTAAAAT-ACCTGTTCCTGA-GATAATTGACAA--AGAGAATGATTATAA--- 473
                       * *  ***    *  *** * *** * * ** * *   *  *  *   *** *  *   

consensus_9130#0      TTTAGCCTTGGAGGATGGTCCCCCCATGTTCAGACAAGGTTTCACGTGCCCCGCCCTACT 597
consensus_9130#1      ------------------------------------------------------------
                                                                                  

consensus_9130#0      TTTCGCTAACTTAGTACCACGGATCTGTTTTCGAATACGGGGCTATCACCCACTACGGCC 657
consensus_9130#1      ------------------------------------------------------------
                                                                                  

consensus_9130#0      GGACTTTCCATTCCGTTCTTCTAACAGTTCCGCTATCACTAGCAGGCTCTTCCCCGTTCG 717
consensus_9130#1      ------------------------------------------------------------
                                                                                  

consensus_9130#0      CTCGCCACTACTTGGGGAATCTCGGCTGATTTCTTTTCCTCCGGCTA 764
consensus_9130#1      -----------------------------------------------