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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9133#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1469 fasta sequence
[GCCATATTCGGCCGAGGTTTGAACTTGTTTATGTCTTATATGGCGTGTTGTGCAATTTTTACTGAACAGATGTTTCCCTTCAAATGGGAAAATTAGCCGCACATTTGTCGCAATAATCCTCCATATATTTTCTATTTGTCTTGGTTTGTTAGTTCTATATTATGCTTCATATGACCTGTGGTGGATTGTTATTGGCCTTATAATAACCTTAACACTATTATTTACCATAAATATTAACTCTGATATTTCTAATTCACATGGGGAATATACTAATTGGGAATTATTTGTAACAATTGGAATTTGTTCATCTGTTCAATTATACTGCGAGTTCTACAAAAATCCTGTTAAATGGCATCAAATTCGTGGCAGTATAATGATAATTATTATGAAATGTATATCTTTTTCTATGGAAAATAAAAATTTTTATAAAACGGTCAATAAAGAGCCTTGCTGCATACTACTGTGGACACCATTATATCGTGGATTACTTTGGTTATCCTATTGTCTATGTCCAGCTAGTTTATTGTTTGGCCCATGGTTTAATCCATTAAGATATGAAGAAATGGTTAGAAACTATGCTGTTAATGATAGACCTTTTTCTTTCAAAAATACTATGATTTCACTTTTTCAGACAGCTAAATTATTTGGGCTGTCTTTTTTTATATTTAACTTATTCGACTTGTTTCACTGATACATTAGCTTCGATATTGAAATTGCAACCTTGGCTTCATGCTTATTTCGCATCACAAAGTTTTCGTTTCAGTCATTATTTCATATGTATATCAAGTGAATCTTCCATGACAGCCTTAGGATATTGTGATAAATATTCAATACAATCAAACAAACAAGAAAATACTAAAGAGAAAAACAGATCAAAAGATGTATATAAACCTGTTGTGGTAACTCGTCCATTGTTTATTGAATTT-CCTCGGTCGTTAGTTGAAGTTGTTATATACTGGAATTTGCCAATGCATACATGGTTAAAACAATATGTATACAAGCCGTTACGTCCATATGGACATGTGTATGCTGTATTGGGAACGTATACAGCTAGTTCATTGTTGCATGGTTTGAATTTTCAACTTAGCGCTGTTTTATTCTCTATTGGAATCTATGCATATACTGAATATGTCTTTC-GGGAAAAATTGGGCCAGATCCTAGATGCATGTATTGCTAGTCGTCCATGTCCTGAATCCTGTTGTCATAGTAACAAGAATTCATCGTGGGTATATT-GGTGTAATGTAGCCTT-CAGTTGTTTGGCTATATTTCATTTGGCTTATTTAGCTGTAATGTTTGATACAAGTGAACAACAATTTCAGGGCTATAATATGTGGCATAC-TATGAATAAATGGTCCAATCTGGGATTTCTC-AGTCATATTGGAG-CCTTTGCAAATTTCTTATTTTACTTATATTTATAAATAAATATTGAATCAGCCTAATGTATTTTTACTGTACGGAATAAAACATTC]
[+] EMBL CD081600 [GCCATATTCGGCCGAGGTTTGAACTTGTTTATGTCTTATATGGCGTGTTGTGCAATTTTTACTGAACAGATGTTTCCCTTCAAATGGGAAAATTAGCCGCACATTTGTCGCAATAATCCTCCATATATTTTCTATTTGTCTTGGTTTGTTAGTTCTATATTATGCTTCATATGACCTGTGGTGGATTGTTATTGGCCTTATAATAACCTTAACACTATTATTTACCATAAATATTAACTCTGATATTTCTAATTCACATGGGGAATATACTAATTGGGAATTATTTGTAACAATTGGAATTTGTTCATCTGTTCAATTATACTGCGAGTTCTACAAAAATCCTGTTAAATGGCATCAAATTCGTGGCAGTATAATGATAATTATTATGAAATGTATATCTTTTTCTATGGAAAATAAAAATTTTTATAAAACGGTCAATAAAGAGCCTTGCTGCATACTACTGTGGACACCATTATATCGTGGATTACTTTGGTTATCCTATTGTCTATGTCCAGCTAGTTTATTGTTTGGCCCATGGTTTAATCCATTAAGATATGAAGAAATGGTTAGAAACTATGCTGTTAATGATAGACCTTTTTCTTTCAAAAATACTATGATTTCACTTTTTCAGACAGCTAAATTATTTGGGCTGTCTTTTTTTATATTTAACTTATTCGACTTGTTTCACTGATACATTAGCTTCGATATTGAAATTGCAACCTTGGCTTCATGCTTATTTCGCATCACANAGTTTTCGTTTCAGTCATTATTTCATATGTATATCAAGTGAATCTTCCATGACAGCCTTA ]
[+] EMBL CD083597 [ AGAAACTATGCTGTTAATGATAGA CTTTTTCTTTCAAAAATACTATGATTTCACTTTTTCAGACAGCTAAATTATTTGGGCTGTC TTTTTTATATTTAACTTATTCGACTTGTTTCACTGATACATTAGCTTCGATATTGAAATTGCAACCTTGGCTTCATGCTTATTTCGCATCACAAAGTTTTCGTTTCAGTCATTATTTCATATGTATATCAAGTGAATCTTCCATGACAGCCTTAGGATATTGTGATAAATATTCAATACAATCAAACAAACAAGAAAATACTAAAGAGAAAAACAGATCAAAAGATGTATATAAACCTGTTGTGGTAACTCGTCCATTGTTTATTGAATTT CCTCGGTCGTTAGTTGAAGTTGTTATATACTGGAATTTGCCAATGCATACATGGTTAAAACAATATGTATACAAGCCGTTACGTCCATATGGACATGTGTATGCTGTATTGGGAACGTATACAGCTAGTTCATTGTTGCATGGTTTGAATTTTCAA ]
[+] EMBL CD082163 [ gGAC TGTTT ACTGAT CATTAGCTTCGATATTGATATTGCAACCTTGGCTTCATGCTTATTTCGCATCACAAAGTTTTCGTTTCAGTCATTATTTCATATGTATATCAAGTGAATCTTCCATGACAGCCTTAGGATATTGTGATAAATATTCAATACAATCAAACAAACAAGAAAATACTAAAGAGAAAAACAGATCAAAAGATGTATATAAACCTGTTGTGGTAACTCGTCCATTGTTTATTGAATTTCCCTCGGCCG TAGTTGAAGTTGTTATATACTGGAATTTGCCAATGCATACATGGTTAAAACAATATGTATACAAGCCGTTACGTCCATATGGACATGTGTATGCTGTATTGGGAACGTATACAGCTAGTTCATTGTTGCATGGTTTGAATTTTCAACTTAGCGCTGTTTTATTCTCTATTGGAATCTATGCATATACTGAATATGTCTTTCGGGGAAAAATTGGGCCAGATCCTAGATGCATGTATTGCTAGTCGTCCATGTCCTGAATCCTGTTGTCATAGTAACAAGAATTCATCGTGGGTATATTGGGTGT ATGTAGCCTTNCAGTTG TTGGCTATATTTCATTTGGCTTATTTAGCTGGAATGTTTGATACAAGTGAACAACAATTTCAGGCCTTTAATATGTGGCCTACTTATG ATAAAAGGTCCATCCTGGAATTTCTCTAGCCA ATTGGAA CCTTTGCAAATTTCTTATTTTACTTAAATTTAAAAAAAAAATTTGGA CACCCATAGGT TTTTTCCTGGCCGGGA AAAACATT ]
[-] EMBL CD139807 [ AAACAAGAAAATTCTAAAGAGAAAAACAGATCAAAAGATGTATATAAACCTGTTGTGGTAACTCGTCCATTGTTTATTGAATTT CCTCGGTCGTTAGTTGAAGTTGTTATATACTGGAATTTGCCAATGCATACATGGTTAAAACAATATGTATACAAGCCGTTACGTCCATATGGACATGTGTATGCTGTATTGGGAACGTATACAGCTAGTTCATTGTTGCATGGTTTGAATTTTCAACTTAGCGCTGTTT ]
[-] EMBL CD075779 [ GAATTTGCCAATGCATACATGGTTAAAACAATATGTATACAAGCCGTTACGTCCATATGGACATGTGTATGCTGTATTGGGAACGTATACAGCTAGTTCATTGTTGCATGGTTTGAATTTTCAACTTAGCGCTGTTTTATTCTCTATTGGAATCTATGCATATACTGAATATGTCTTTC GGGAAAAATTGGCCAAGATCCTAGATGCATGTATTGCTAGTCGTCCATGTCCTGAATCCTGTTGTCATAGTAACAAGAATTCATCGTGGGTATATT GGTGTAATGTAGCCTT CAGTTGTTTGGCTATATTTCATTTGGCTTATTTAGCTGTAATGTTTGATACAAGTGAACAACAATTTCAGGGCTATAATATGTGGCATAC TATGAATAAATGGTACAATCTGGGATTTCTC AGTCATATTGTAG CCTTTGCAAATTTCTTATTTTACTTATATTTATAAATAAATATTGAATCAGCTTAATGTATTTTTACTGTACGGAATAAAACATTC]
[-] EMBL CD075423 [ TCATAGTACCAAAAATTCTTCGTGGGTATATT GGTGTAATGAACCCTT CAGTTGTTGGGCTATATTTCATTTGGCTTATTTAGCTGTAATGTTTGATCCAAGTGACCACCAATTTCAGGGCTATAATATGGGGCATAC TATGAATAAATGGTCCAATTTGGGATTTCCC AGTCATATT GAGCCCTTTGCAAATTTCTTATTTTACTTATATTTATAAATAAATATTGAATCAGCATAATGTATTTTTACTGTACGGAATAAACCACTC]
consensusID : consensus_9133#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 617 fasta sequence
[TTTACTCTTGTGATTTGTTGCATGATTAACAAATTCGTCGAAGATCGACAGATTCTCATATCCCTGATTTTTAGTTGTGAGTGTTGAATAATCCAAGGGATTTTTGTCCAAGTTTTATTTCATTAGTTCGAAAAAGATGGATGAACAAGAAGAATCTTGGTCTATGGATGAAGATGAAGAAGAACTATTTGAGGAGGTGGACGAAGAAAATGGAGATAGTGATCTGTCGGGAAATTATTTAGATGATCTAGAAACTGTTGAAGAGGATGATGATGATTTTGAAGATGTTTCATTCGAGAATGCATTATCCATGAAGTCTATATCATCAGAAATATTATCATGCTCCATACCAGTTTTGAAACAAGCCTACTGGTTACTGATTTTGATACTTGTTTCATGTCTTTATATGGCGTGTTGTGCAATTTTTACTGAACAGATGTTTCCCTTCAAATGGGAAAATTAGCCGCACATTTGTCGCAATAATCCTCCATATATTTTCTATTTGTCTTGGTTTGTTAGTTCTATATTATGCTTCATATGACCTGTGGTGGATTGGTATTGCCTTATATAACCTTACACTATTATTTACCATAATATTAACTCTGATATTTCTAATT]
[+] EMBL BF936793 [TTTACTCTTGTGATTTGTTGCATGATTAACAAATTCGTCGAAGATCGACAGATTCTCATATCCCTGATTTTTAGTTGTGAGTGTTGAATAATCCAAGGGATTTTTGTCCAAGTTTTATTTCATTAGTTCGAAAAAGATGGATGAACAAGAAGAATCTTGGTCTATGGATGAAGATGAAGAAGAACTATTTGAGGAGGTGGACGAAGAAAATGGAGATAGTGATCTGTCGGGAAATTATTTAGATGATCTAGAAACTGTTGAAGAGGATGATGATGATTTTGAAGATGTTTCATTCGAGAATGCATTATCCATGAAGTCTATATCATCAGAAATATTATCATGCTCCATACCAGTTTTGAAACAAGCCTACTGGTTACTGATTTTGATACTTGTTTCATGTCTTTATATGGCGTGTTGTGCAATTTTTACTGAACAGATGTTTCCCTTCAAATGGGAAAATTAGCCGCACATTTGTCGCAATAATCCTCCATATATTTTCTATTTGTCTTGGTTTGTTAGTTCTATATTATGCTTCATATGACCTGTGGTGGATTGGTATTGCCTTATATAACCTTACACTATTATTTACCATAATATTAACTCTGATATTTCTAATT]
[+] EMBL CD078189 [ aggAAATTCGTCGAAGATCGACAGATTCTCATATCCCTGATTTTTAGTTGTGAGTGTTGAATAATCCAAGGGATTTTTGTCCAAGTTTTATTTCATTAGTTCGAAAAAGATGGATGAACAAGAAGAATCTTGGTATATGGATGAAGATGAAGAAG ACTATTTGAGGAGGTGGACGAAG AAATGGAGATA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9133#0 GCCATATTCGGCCGAGGTTTGAACTTGTTTATGTCTTATATGGCGTGTTGTGCAATTTTT 60
consensus_9133#1 ---------------------------------------------------------TTT 3
***
consensus_9133#0 ACTGAACAGATGTTTCCCTTCAAATGGGAAAATTAGCCGCACATTTGTCGCAATAATCCT 120
consensus_9133#1 ACTCTTGTGATTTGTTGCAT--GATTAACAAATTCGTCGAAGATCGACAG-----ATTCT 56
*** *** * * * * ** ***** * ** * ** * ** **
consensus_9133#0 CCATATATTTTCTATTTGTCTTGGTTTGTTAGTTCTATATTATGCTTCATATGACCTGTG 180
consensus_9133#1 C---ATATCCCTGATTT---TTAGTT-GTGAGTGTTGAATAA---TCCAAGGGATTTTTG 106
* **** **** ** *** ** *** * ** * * ** ** * **
consensus_9133#0 GTGGATTGTTATTGGCCTTATAATAACCTTAACACTATTATTTACCATAAATATTAACTC 240
consensus_9133#1 TCCAAGTTTTATT----TCAT--TAGTTCGAAAAAGATGGATGAACAAGAAGA---ATCT 157
* * ***** * ** ** ** * ** * * ** ** * *
consensus_9133#0 TGATATTTCTAATTCACATGGGGAATATACTAATTG-GGAATTATTTGTAACAATTGGAA 299
consensus_9133#1 TGGT-CTATGGATGAAGATGAAGAAGA-ACTATTTGAGGAGGTGGACGAAGAAAATGGAG 215
** * * ** * *** *** * **** *** *** * * * ** ****
consensus_9133#0 TTTGTTCATCTGTTCAATTATACTGCGAGTTCTACAAAAATCCTGTTAAATGGCATCAAA 359
consensus_9133#1 ATAGTG-ATCTGTCGGGAAATTATTTAGATGATCTAGAAA--CTGTTGAAGAGGATGATG 272
* ** ****** ** * * * * *** ***** ** * ** *
consensus_9133#0 TTCGTGGCAGTATAATGATAATT-ATTATGAAATGTATATCTTTTTCTATGGAAAATAAA 418
consensus_9133#1 ATGAT-----TTTGAAGATGTTTCATTCGAGAATGCAT-----TATCCATG--AAGTCTA 320
* * * * * *** ** *** **** ** * ** *** ** * *
consensus_9133#0 AATTTTTATAAAACGGTCAATAAAGAGCCTTGCTGCATACTACTGTGGACACCATTATAT 478
consensus_9133#1 TATCATCAGAAA-----TATTA-----TCATGCTCCATACCAGTTTTGAAACAAGCCTAC 370
** * * *** * ** * **** ***** * * * ** ** * **
consensus_9133#0 CGTGGATTACTTTGGTTATCCTATT---GTCTATGTCCAGCTAGTT---TATTGTTTGGC 532
consensus_9133#1 TGGTTACTGATTTTGATACTTGTTTCATGTCTTTATATGGCGTGTTGTGCAATTTTTACT 430
* * * *** * ** ** **** * * ** *** * * ***
consensus_9133#0 CCATGGTTTAATCCATTAAGATATGAAGAAATGGTTAGAAACTATGCTGTTAATGATAGA 592
consensus_9133#1 GAACAGATGTTTCCCTTCAAATG-GGAAAATTAGCCGCACATT-TGTCGC-AATAATCCT 487
* * * *** ** * ** * * ** * * * * * ** * *** **
consensus_9133#0 CCTTTTTCTTTCAAAAATACTATGATTTCACTTTTTCAGACAGCTAAATTATTTGGGCTG 652
consensus_9133#1 CCATATATTTTCTATT-TGTCTTGGTTTGTTAGTTCTATATTA-TGCTTCATATGACCTG 545
** * * **** * * ** *** ** * * * * ** ** ***
consensus_9133#0 TCTTTTTTTATATTTAACTTATTCGACTTGTTTCACTGATACATTAGCTTCGATATTGAA 712
consensus_9133#1 TGGTGGATTGGTATTGCCTTATATAACC--TTACACTATTA--TTTACCATAATATTAAC 601
* * ** ** ***** ** ** **** ** ** * ***** *
consensus_9133#0 ATTGCAACCTTGGCTTCATGCTTATTTCGCATCACAAAGTTTTCGTTTCAGTCATTATTT 772
consensus_9133#1 TCTGATATTTCTAATT-------------------------------------------- 617
** * * **
consensus_9133#0 CATATGTATATCAAGTGAATCTTCCATGACAGCCTTAGGATATTGTGATAAATATTCAAT 832
consensus_9133#1 ------------------------------------------------------------
consensus_9133#0 ACAATCAAACAAACAAGAAAATACTAAAGAGAAAAACAGATCAAAAGATGTATATAAACC 892
consensus_9133#1 ------------------------------------------------------------
consensus_9133#0 TGTTGTGGTAACTCGTCCATTGTTTATTGAATTTCCTCGGTCGTTAGTTGAAGTTGTTAT 952
consensus_9133#1 ------------------------------------------------------------
consensus_9133#0 ATACTGGAATTTGCCAATGCATACATGGTTAAAACAATATGTATACAAGCCGTTACGTCC 1012
consensus_9133#1 ------------------------------------------------------------
consensus_9133#0 ATATGGACATGTGTATGCTGTATTGGGAACGTATACAGCTAGTTCATTGTTGCATGGTTT 1072
consensus_9133#1 ------------------------------------------------------------
consensus_9133#0 GAATTTTCAACTTAGCGCTGTTTTATTCTCTATTGGAATCTATGCATATACTGAATATGT 1132
consensus_9133#1 ------------------------------------------------------------
consensus_9133#0 CTTTCGGGAAAAATTGGGCCAGATCCTAGATGCATGTATTGCTAGTCGTCCATGTCCTGA 1192
consensus_9133#1 ------------------------------------------------------------
consensus_9133#0 ATCCTGTTGTCATAGTAACAAGAATTCATCGTGGGTATATTGGTGTAATGTAGCCTTCAG 1252
consensus_9133#1 ------------------------------------------------------------
consensus_9133#0 TTGTTTGGCTATATTTCATTTGGCTTATTTAGCTGTAATGTTTGATACAAGTGAACAACA 1312
consensus_9133#1 ------------------------------------------------------------
consensus_9133#0 ATTTCAGGGCTATAATATGTGGCATACTATGAATAAATGGTCCAATCTGGGATTTCTCAG 1372
consensus_9133#1 ------------------------------------------------------------
consensus_9133#0 TCATATTGGAGCCTTTGCAAATTTCTTATTTTACTTATATTTATAAATAAATATTGAATC 1432
consensus_9133#1 ------------------------------------------------------------
consensus_9133#0 AGCCTAATGTATTTTTACTGTACGGAATAAAACATTC 1469
consensus_9133#1 -------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||