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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9137#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1817 fasta sequence
[TTATAAACAAATCAACGTCTTTACTATCATCAGTTGAGTTTCTAAAGAAAACAACTTTTCAACCAATATATTTAGTGATGTATACTCTTGTGGCTGTACTAATTTTAAAAGTACAGGAACACTAGGGTGATTAGAGGATTTCTCATTTACGACTGTAATAAAATTTCTTGCTGCTGACTGGAATTCATGGATCTCTTTTTGTCCACGCAAATAGCACCAGTCGGCCAATTTCAGCCAAACAGATGCAGATGAACCATTTGAAGATAAATGTGTAGCCATCATTAGTAAACGATTCGTCCATGAAGTTGAAGAACCGGGGAATGAATTGGAAGATTGAAGGGGTTCAGTAATATCTGGCATACCGTTACACCAGGATACATCAGACAAACAACTGAACAATTCAAGGTCTGATGCAATACGTAAAAATTTCTGAGACTTTTCTCCTGGTTCGTCTGAGCTAACAAAACTATGATATATTTTTTCAGCCAATGAAATGTCGTTGGTGTTTGTAGGTGATTCTAGCCAATCGAAAAGACTTAGAGCCATTTCAGCTTCTAAATTACATTTAGATGCAGTTTCAAATGTATCACAACTATATTTTTTCATTAATCCCAATTTCAGACCAGAAGTTAACATTGCTATTGCTTTTGTCTTATTAATTAGTTCATGCTCGTCATTTCCACTCCCAAACAACCACAGAATTCTGGCCATACAGTTATGGAATTTCAAAGTATCCAATTGAGACAATTTAGATGTTATATCATCTGAGGAAGATAAAGCGACGTTGCAAAGCTTATTAAAATATGTTGCTTCTTTATCCACTGAAGTATCAAGAAGTTTGAGACATTTCGCTGTTTTAACAAGCAAACGCCGAGCAAGATATGGACAGTTATTTAAACATGCCCATTGGCAAGCTGAAAATCCAGCGACAGAATGGGCTTTTATATCGGAAGAAATAAGGTTTACCCAAGCAGAATAGTTTATGGGACTTGATGTCCCATAAGTAGTACATGTTCGTTCATTAAGTATAAGTTGCGCTTTAGTCATATAATCTAGCAAACCATCATCCAGAACATAATTGGATTGAGAGTAAAAATCTGCAAACATATTTAAGGGTAAAAGGAAGTTTGCACTTTCTGACTTCTGTCTTATAATCGTCGTTAGCTCCGAAAAACATTTTACCAACAACTTGTCTTCTGTGTTGCCATAACTATCATGTTTTACGCAAGCAGCGTTTACCAGCAGACTGTCTAGTTGCTTTTCAATGGAGCTCTGGGACCATAGTTCAGAACTTGGAATGAGATTATCTTCAACCACATTTTCAGAAACCCATTCAGATAATTTACTTAAACAGTCGAGGCGTGCTGAATTAAGTTGAAATGTTGAATTTTCCTTTAAAGATTTCATTTTGATACACGATGTTACACGGTTCCGGAGTTTATGCGCACAAGTATAGTTACCTTCAGAAAGGTATATTTGAAGAAGGACATTTACGACATACGCTGTAGATGTTCGAACGGAGCATTTATCAGTTTCATTGGTAATGACGTTNTCTGAATTTAAAGCGCTGTTTTTTTGGCAAATTCGAATCAACANAACTGGTTAATTGTAGAATACCTTGATCCCAACGGCCACGAGTTAGTGAAGAGATGCCATGAAGCCATGAAAGTGGGTTTTTTTCTGCTGTGAAAAGATCATCTGTCCACTGTGCTAATGCTTTCAATTCTTCCCATGCACCTAAATGATGAAGTGCTTTGGATAAATAAATAAATAGATCAGTAGGGTCACCGTATTGTTTTAAGGTGCTGACCCAAATT]
[-] EMBL CD161000 [TTATAAACAAATCAACGTCTTTACTATCATCAGTTGAGTTTCTAAAGAAAACAACTTTTCAACCAATATATTTAGTGATGTATACTCTTGTGGCTGTACTAATTTTAAAAGTACAGGAACACTAGGGTGATTAGAGGATTTCTCATTTACGACTGTAATAAAATTTCTTGCTGCTGACTGGAATTCATGGATCTCTTTTTGTCCACGCAAATAGCACCAGTCGGCCAATTTCAGCCAAACAGATGCAGATGAACCATTTGAAGATAAATGTGTAGCCATCATTAGTAAACGATTCGTCCATGAAGTTGAAGAACCGGGGAATGAATTGGAAGATTGAAGGGGTTCAGTAATATCTGGCATACCGTTACACCAGGATACATCAGACAAACAACTGAACAATTCAAGGTCTGATGCAATACGTAAAAATTTCTGAGACTTTTCTCCTGGTTCGTCTGAGCTAACAAAACTATGATATATTTTTTCAGCCAATGAAATGTCGTTGGTGTTTGTAGGTGATTCTAGCCAATCGAAAAGACTTAGAGCCATTTCAGCTTCTAAATTACATTTGGATGCAGTTTCAAATGTATCACAACTA ]
[+] EMBL CD121320 [ TTCATGGATCTCTTTTTGTCCACGCAAATAGCACCAGTCGGCCAATTTCAGCCAAACAGATGCAGATGAACCATTTGAAGATAAATGTGTAGCCATCATTAGTAAACGATTCGTCCATGAAGTTGAAGAACCGGGGAATGAATTGGAAGATTGAAGGGGTCCAGTAATATCTGGCATACCGTTACACCAGGATACATCAGACAAACAACTGAACAATTCAAGGTCTGATGCAATACGTAAAAATTTCTGAGACTTTTCTCCTGGTTCGTCTGAGCTAACAAAACTATGATATATTTTTTCAGCCAATGAAATGTCGTTGGTGTTTGTAGGTGATTCTAGCCAATCGAAAAGACTTAGAGCCATTTCAGCTTCTAAATTACATTTAGATGCAGTTTCAAATG ]
[+] EMBL CD121412 [ TTCATGGATCTCTTTTTGTCCACGCAAATAGCACCAGTCGGCCAATTTCAGCCAAACAGATGCAGATGAACCATTTGAAGATAAATGTGTAGCCATCATTAGTAAACGATTCGTCCATGAAGTTGAAGAACCGGGGAATGAATTGGAAGATTGAAGGGGTTCAGTAATATCTGGCATACCGTTACACCAGGATACATCAGACAAACAACTGAACAATTCAAGGTCTGACGCAATACGTAAAAATTTCTGAGACTTTTCTCCTGGTTCGTCTGAGCTAACAAAACTATGATATATTTTTTCAGCCAATGAAATGTCGTTAGTGTTTGTAGGTGATTCTAGCCAATCGAAAAGACTTAGAGCCATTTCAGCTTCTAAATTACATTTAGATGCAG ]
[+] EMBL CD117163 [ CAATCGAAAAGACTTAGAGCCATTTCAGCTTCTAAATTACATTTAGATGCAGTTTCAAATGTATCACAACTATATTTTTTCATTAATCCCAATTTCAGACCAGAAGTTAACATTGCTATTGCTTTTGTCTTATTAATTAGTTCATGCTCGTCATTTCCACTCCCAAACAACCACAGAATTCTGGCCATACAGTTATGGAATTTCAAAGTATCCAATTGAGACAATTTAGATGTTATATCATCTGAGGAAGATAAAGCGACGTTGCAAAGCTTATTAAAATATGTTGCTTCTTTATCCACTGAAGTATCAAGAAGTTTGAGACATTTCGCTGTTTTAACAAGCAAACGCCGAGCAAGATATGGACAGTTATTTAAACATGCCCATTGGCAAGCTGAAAATCCAGCGACAGAATGGGCTTTTATATCGGAAGAAATAAGGTTTACCCAAGCAGAATAGTTTATGGGACTTGATGTCCCATAAGTAGTACATGTTCGTTCATTAAGAATAAG ]
[+] EMBL CD117162 [ CAATCGAAAAGACTTAGAGCCATTTCAGCTTCTAAATTACATTTAGATGCAGTTTCAAATGTATCACAACTATATTTTTTCATTAATCCCAATTTCAGACCAGAAGTTAACATTGCTATTGCTTTTGTCTTATTAATTAGTTCATGCTCGTCATTTCCACTCCCAAACAACCACAGAATTCTGGCCATACAGTTATGGAATTTCAAAGTATCCAATTGAGACAATTTAGATGTTATATCATCTGAGGAAGATAAAGCGACGTTGCAAAGCTTATTAAAATATGTTGCTTCTTTATCCACTGAAGTATCAAGAAGTTTGAGACATTTCGCTGTTTTAACAAGCAAACGCCGAGCAAGATATGGACAGTTATTTAAACATGCCCATTGGCAAGCTGAAAATCCAGCGACAGAATGGGCTTTTATATCGGAAGAAATAAGGTTTACCCAAGCAGAATAGTTTATGGGACTTGATGTCCCATAAGTAGTACATGTTCGTTCATTAAGTATAAGTTGCGCTTTAGTCATATAATCTAGCAAACCATCATCCAGAACATAATTGGAT ]
[+] EMBL CD154910 [ TTATGGGACTTGATGTCCCATAAGTAGTACATGTTCGTTCATTAAGTATAAGTTGCGCTTTAGTCATATAATCTAGCAAACCATCATCCAGAACATAATTGGATTGAGAGTAAAAATCTGCAAACATATTTAAGGGTAAAAGGAAGTTTGCACTTTCTGACTTCTGTCTTATAATCGTCGTTAGCTCCGAAAAACATTTTACCAACAACTTGTCTTCTGTGTTGCCATAACTATCATGTTTTACGCAAGCAGCGTTTACCAGCAGACTGTCTAGTTGCTTTTCAATGGAGCTCTGGGACCATAGTTCAGAACTTGGAATGAGATTATCTTCAACCACATTTTCAGAAACCCATTCAGATAATTTACTTAAACAGTCGAGGCGTGCTGAATTAAGTTGAAATGTTGAATTTTCCTTTAAAGATTTCATTTTGATACACGATGTTACACGGTTCCGGAGTTTATGCGCACAAGTATAGTTACCTTCAGAAAGGTATATTTGAAGAAGGACATTTACGACATACGCTGTAGATGTTCGAACGGAGCATTTATCAGTTTCATTGGTAATGACGTTNTCTGAATTTAAAGCGCTGTTTTTTTGGCAAATTCGAATCAACANAAC ]
[-] EMBL CD154911 [ GATAATTTACTTAAACAGTCGAGGCGTGCTGAATTAAGTTGAAATGTTGAATTTTCCTTTAAAGATTTCATTTTGATACACGATGTTACACGGTTCCGGAGTTTATGCGCACAAGTATAGTTACCTTCAGAAAGGTATATTTGAAGAAGGACATTTACGACATACGCTGTAGATGTTCGAACGGAGCATTTATCAGTTTCATTGGTAATGACGTTTTCTGAATTTAAAGCGCTGTTTTTTTGGCAAATTCGAATCAACAAAACTGGTTAATTGTAGAATACCTTGATCCCAACGGCCACGAGTTAGTGAAGAGATGCCATGAAGCCATGAAAGTGGGTTTTTTTCTGCTGTGAAAAGATCATCTGTCCACTGTGCTAATGCTTTCAATTCTTCCCATGCACCTAAATGATGAAGTGCTTTGGATAAATAAATAAATAGATCAGTAGGGTCACCGTATTGTTTTAAGGTGCTGACCCAAATT]
consensusID : consensus_9137#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence
[TGTTTAAACAGTTCTAAGTCATCTTCGTCACAACGATCAGTTGCTAAAAAGGTTGTCAGAGCACTGATTAGAGCAGTTATAAACAAATCAACGTCTTTACTATCATCAGTTGAGTTTTCTAAAGAAAACAACTTTTCAACCAATATATTTAGTGATGTATACTCTTGTGGCTGTACTAATTTTAAAAGTACAGGAACACTAGGGTGATTAGAGGATTTCTCATTTACGACTGTAATAAAATTTCTTGTCGGAATGATGTTTAAACAGTTC]
[-] EMBL CD130430 [TGTTTAAACAGTTCTAAGTCATCTTCGTCACAACGATCAGTTGCTAAAAAGGTTGTCAGAGCACTGATTAGAGCAGTTATAAACAAATCAACGTCTTTACTATCATCAGTTGAGTTTTCTAAAGAAAACAACTTTTCAACCAATATATTTAGTGATGTATACTCTTGTGGCTGTACTAATTTTAAAAGTACAGGAACACTAGGGTGATTAGAGGATTTCTCATTTACGACTGTAATAAAATTTCTTGTCGGAATGATGTTTAAACAGTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9137#0 ------------------------------------------------------------
consensus_9137#1 TGTTTAAACAGTTCTAAGTCATCTTCGTCACAACGATCAGTTGCTAAAAAGGTTGTCAGA 60
consensus_9137#0 ----------------TTATAAACAAATCAACGTCTTTACTATCATCAGTTGAGTTT-CT 43
consensus_9137#1 GCACTGATTAGAGCAGTTATAAACAAATCAACGTCTTTACTATCATCAGTTGAGTTTTCT 120
***************************************** **
consensus_9137#0 AAAGAAAACAACTTTTCAACCAATATATTTAGTGATGTATACTCTTGTGGCTGTACTAAT 103
consensus_9137#1 AAAGAAAACAACTTTTCAACCAATATATTTAGTGATGTATACTCTTGTGGCTGTACTAAT 180
************************************************************
consensus_9137#0 TTTAAAAGTACAGGAACACTAGGGTGATTAGAGGATTTCTCATTTACGACTGTAATAAAA 163
consensus_9137#1 TTTAAAAGTACAGGAACACTAGGGTGATTAGAGGATTTCTCATTTACGACTGTAATAAAA 240
************************************************************
consensus_9137#0 TTTCTTGCTGCTGACTGGAATTCATGGATCTCTTTTTGTCCACGCAAATAGCACCAGTCG 223
consensus_9137#1 TTTCTTGTCG--GAATGATGTTTAAACAGTTC---------------------------- 270
******* * ** ** ** * * **
consensus_9137#0 GCCAATTTCAGCCAAACAGATGCAGATGAACCATTTGAAGATAAATGTGTAGCCATCATT 283
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 AGTAAACGATTCGTCCATGAAGTTGAAGAACCGGGGAATGAATTGGAAGATTGAAGGGGT 343
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 TCAGTAATATCTGGCATACCGTTACACCAGGATACATCAGACAAACAACTGAACAATTCA 403
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 AGGTCTGATGCAATACGTAAAAATTTCTGAGACTTTTCTCCTGGTTCGTCTGAGCTAACA 463
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 AAACTATGATATATTTTTTCAGCCAATGAAATGTCGTTGGTGTTTGTAGGTGATTCTAGC 523
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 CAATCGAAAAGACTTAGAGCCATTTCAGCTTCTAAATTACATTTAGATGCAGTTTCAAAT 583
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 GTATCACAACTATATTTTTTCATTAATCCCAATTTCAGACCAGAAGTTAACATTGCTATT 643
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 GCTTTTGTCTTATTAATTAGTTCATGCTCGTCATTTCCACTCCCAAACAACCACAGAATT 703
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 CTGGCCATACAGTTATGGAATTTCAAAGTATCCAATTGAGACAATTTAGATGTTATATCA 763
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 TCTGAGGAAGATAAAGCGACGTTGCAAAGCTTATTAAAATATGTTGCTTCTTTATCCACT 823
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 GAAGTATCAAGAAGTTTGAGACATTTCGCTGTTTTAACAAGCAAACGCCGAGCAAGATAT 883
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 GGACAGTTATTTAAACATGCCCATTGGCAAGCTGAAAATCCAGCGACAGAATGGGCTTTT 943
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 ATATCGGAAGAAATAAGGTTTACCCAAGCAGAATAGTTTATGGGACTTGATGTCCCATAA 1003
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 GTAGTACATGTTCGTTCATTAAGTATAAGTTGCGCTTTAGTCATATAATCTAGCAAACCA 1063
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 TCATCCAGAACATAATTGGATTGAGAGTAAAAATCTGCAAACATATTTAAGGGTAAAAGG 1123
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 AAGTTTGCACTTTCTGACTTCTGTCTTATAATCGTCGTTAGCTCCGAAAAACATTTTACC 1183
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 AACAACTTGTCTTCTGTGTTGCCATAACTATCATGTTTTACGCAAGCAGCGTTTACCAGC 1243
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 AGACTGTCTAGTTGCTTTTCAATGGAGCTCTGGGACCATAGTTCAGAACTTGGAATGAGA 1303
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 TTATCTTCAACCACATTTTCAGAAACCCATTCAGATAATTTACTTAAACAGTCGAGGCGT 1363
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 GCTGAATTAAGTTGAAATGTTGAATTTTCCTTTAAAGATTTCATTTTGATACACGATGTT 1423
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 ACACGGTTCCGGAGTTTATGCGCACAAGTATAGTTACCTTCAGAAAGGTATATTTGAAGA 1483
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 AGGACATTTACGACATACGCTGTAGATGTTCGAACGGAGCATTTATCAGTTTCATTGGTA 1543
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 ATGACGTTNTCTGAATTTAAAGCGCTGTTTTTTTGGCAAATTCGAATCAACANAACTGGT 1603
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 TAATTGTAGAATACCTTGATCCCAACGGCCACGAGTTAGTGAAGAGATGCCATGAAGCCA 1663
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 TGAAAGTGGGTTTTTTTCTGCTGTGAAAAGATCATCTGTCCACTGTGCTAATGCTTTCAA 1723
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 TTCTTCCCATGCACCTAAATGATGAAGTGCTTTGGATAAATAAATAAATAGATCAGTAGG 1783
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 GTCACCGTATTGTTTTAAGGTGCTGACCCAAATT 1817
consensus_9137#1 ----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||