These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9137#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1817 fasta sequence [TTATAAACAAATCAACGTCTTTACTATCATCAGTTGAGTTTCTAAAGAAAACAACTTTTCAACCAATATATTTAGTGATGTATACTCTTGTGGCTGTACTAATTTTAAAAGTACAGGAACACTAGGGTGATTAGAGGATTTCTCATTTACGACTGTAATAAAATTTCTTGCTGCTGACTGGAATTCATGGATCTCTTTTTGTCCACGCAAATAGCACCAGTCGGCCAATTTCAGCCAAACAGATGCAGATGAACCATTTGAAGATAAATGTGTAGCCATCATTAGTAAACGATTCGTCCATGAAGTTGAAGAACCGGGGAATGAATTGGAAGATTGAAGGGGTTCAGTAATATCTGGCATACCGTTACACCAGGATACATCAGACAAACAACTGAACAATTCAAGGTCTGATGCAATACGTAAAAATTTCTGAGACTTTTCTCCTGGTTCGTCTGAGCTAACAAAACTATGATATATTTTTTCAGCCAATGAAATGTCGTTGGTGTTTGTAGGTGATTCTAGCCAATCGAAAAGACTTAGAGCCATTTCAGCTTCTAAATTACATTTAGATGCAGTTTCAAATGTATCACAACTATATTTTTTCATTAATCCCAATTTCAGACCAGAAGTTAACATTGCTATTGCTTTTGTCTTATTAATTAGTTCATGCTCGTCATTTCCACTCCCAAACAACCACAGAATTCTGGCCATACAGTTATGGAATTTCAAAGTATCCAATTGAGACAATTTAGATGTTATATCATCTGAGGAAGATAAAGCGACGTTGCAAAGCTTATTAAAATATGTTGCTTCTTTATCCACTGAAGTATCAAGAAGTTTGAGACATTTCGCTGTTTTAACAAGCAAACGCCGAGCAAGATATGGACAGTTATTTAAACATGCCCATTGGCAAGCTGAAAATCCAGCGACAGAATGGGCTTTTATATCGGAAGAAATAAGGTTTACCCAAGCAGAATAGTTTATGGGACTTGATGTCCCATAAGTAGTACATGTTCGTTCATTAAGTATAAGTTGCGCTTTAGTCATATAATCTAGCAAACCATCATCCAGAACATAATTGGATTGAGAGTAAAAATCTGCAAACATATTTAAGGGTAAAAGGAAGTTTGCACTTTCTGACTTCTGTCTTATAATCGTCGTTAGCTCCGAAAAACATTTTACCAACAACTTGTCTTCTGTGTTGCCATAACTATCATGTTTTACGCAAGCAGCGTTTACCAGCAGACTGTCTAGTTGCTTTTCAATGGAGCTCTGGGACCATAGTTCAGAACTTGGAATGAGATTATCTTCAACCACATTTTCAGAAACCCATTCAGATAATTTACTTAAACAGTCGAGGCGTGCTGAATTAAGTTGAAATGTTGAATTTTCCTTTAAAGATTTCATTTTGATACACGATGTTACACGGTTCCGGAGTTTATGCGCACAAGTATAGTTACCTTCAGAAAGGTATATTTGAAGAAGGACATTTACGACATACGCTGTAGATGTTCGAACGGAGCATTTATCAGTTTCATTGGTAATGACGTTNTCTGAATTTAAAGCGCTGTTTTTTTGGCAAATTCGAATCAACANAACTGGTTAATTGTAGAATACCTTGATCCCAACGGCCACGAGTTAGTGAAGAGATGCCATGAAGCCATGAAAGTGGGTTTTTTTCTGCTGTGAAAAGATCATCTGTCCACTGTGCTAATGCTTTCAATTCTTCCCATGCACCTAAATGATGAAGTGCTTTGGATAAATAAATAAATAGATCAGTAGGGTCACCGTATTGTTTTAAGGTGCTGACCCAAATT] [-] EMBL CD161000 [TTATAAACAAATCAACGTCTTTACTATCATCAGTTGAGTTTCTAAAGAAAACAACTTTTCAACCAATATATTTAGTGATGTATACTCTTGTGGCTGTACTAATTTTAAAAGTACAGGAACACTAGGGTGATTAGAGGATTTCTCATTTACGACTGTAATAAAATTTCTTGCTGCTGACTGGAATTCATGGATCTCTTTTTGTCCACGCAAATAGCACCAGTCGGCCAATTTCAGCCAAACAGATGCAGATGAACCATTTGAAGATAAATGTGTAGCCATCATTAGTAAACGATTCGTCCATGAAGTTGAAGAACCGGGGAATGAATTGGAAGATTGAAGGGGTTCAGTAATATCTGGCATACCGTTACACCAGGATACATCAGACAAACAACTGAACAATTCAAGGTCTGATGCAATACGTAAAAATTTCTGAGACTTTTCTCCTGGTTCGTCTGAGCTAACAAAACTATGATATATTTTTTCAGCCAATGAAATGTCGTTGGTGTTTGTAGGTGATTCTAGCCAATCGAAAAGACTTAGAGCCATTTCAGCTTCTAAATTACATTTGGATGCAGTTTCAAATGTATCACAACTA ] [+] EMBL CD121320 [ TTCATGGATCTCTTTTTGTCCACGCAAATAGCACCAGTCGGCCAATTTCAGCCAAACAGATGCAGATGAACCATTTGAAGATAAATGTGTAGCCATCATTAGTAAACGATTCGTCCATGAAGTTGAAGAACCGGGGAATGAATTGGAAGATTGAAGGGGTCCAGTAATATCTGGCATACCGTTACACCAGGATACATCAGACAAACAACTGAACAATTCAAGGTCTGATGCAATACGTAAAAATTTCTGAGACTTTTCTCCTGGTTCGTCTGAGCTAACAAAACTATGATATATTTTTTCAGCCAATGAAATGTCGTTGGTGTTTGTAGGTGATTCTAGCCAATCGAAAAGACTTAGAGCCATTTCAGCTTCTAAATTACATTTAGATGCAGTTTCAAATG ] [+] EMBL CD121412 [ TTCATGGATCTCTTTTTGTCCACGCAAATAGCACCAGTCGGCCAATTTCAGCCAAACAGATGCAGATGAACCATTTGAAGATAAATGTGTAGCCATCATTAGTAAACGATTCGTCCATGAAGTTGAAGAACCGGGGAATGAATTGGAAGATTGAAGGGGTTCAGTAATATCTGGCATACCGTTACACCAGGATACATCAGACAAACAACTGAACAATTCAAGGTCTGACGCAATACGTAAAAATTTCTGAGACTTTTCTCCTGGTTCGTCTGAGCTAACAAAACTATGATATATTTTTTCAGCCAATGAAATGTCGTTAGTGTTTGTAGGTGATTCTAGCCAATCGAAAAGACTTAGAGCCATTTCAGCTTCTAAATTACATTTAGATGCAG ] [+] EMBL CD117163 [ CAATCGAAAAGACTTAGAGCCATTTCAGCTTCTAAATTACATTTAGATGCAGTTTCAAATGTATCACAACTATATTTTTTCATTAATCCCAATTTCAGACCAGAAGTTAACATTGCTATTGCTTTTGTCTTATTAATTAGTTCATGCTCGTCATTTCCACTCCCAAACAACCACAGAATTCTGGCCATACAGTTATGGAATTTCAAAGTATCCAATTGAGACAATTTAGATGTTATATCATCTGAGGAAGATAAAGCGACGTTGCAAAGCTTATTAAAATATGTTGCTTCTTTATCCACTGAAGTATCAAGAAGTTTGAGACATTTCGCTGTTTTAACAAGCAAACGCCGAGCAAGATATGGACAGTTATTTAAACATGCCCATTGGCAAGCTGAAAATCCAGCGACAGAATGGGCTTTTATATCGGAAGAAATAAGGTTTACCCAAGCAGAATAGTTTATGGGACTTGATGTCCCATAAGTAGTACATGTTCGTTCATTAAGAATAAG ] [+] EMBL CD117162 [ CAATCGAAAAGACTTAGAGCCATTTCAGCTTCTAAATTACATTTAGATGCAGTTTCAAATGTATCACAACTATATTTTTTCATTAATCCCAATTTCAGACCAGAAGTTAACATTGCTATTGCTTTTGTCTTATTAATTAGTTCATGCTCGTCATTTCCACTCCCAAACAACCACAGAATTCTGGCCATACAGTTATGGAATTTCAAAGTATCCAATTGAGACAATTTAGATGTTATATCATCTGAGGAAGATAAAGCGACGTTGCAAAGCTTATTAAAATATGTTGCTTCTTTATCCACTGAAGTATCAAGAAGTTTGAGACATTTCGCTGTTTTAACAAGCAAACGCCGAGCAAGATATGGACAGTTATTTAAACATGCCCATTGGCAAGCTGAAAATCCAGCGACAGAATGGGCTTTTATATCGGAAGAAATAAGGTTTACCCAAGCAGAATAGTTTATGGGACTTGATGTCCCATAAGTAGTACATGTTCGTTCATTAAGTATAAGTTGCGCTTTAGTCATATAATCTAGCAAACCATCATCCAGAACATAATTGGAT ] [+] EMBL CD154910 [ TTATGGGACTTGATGTCCCATAAGTAGTACATGTTCGTTCATTAAGTATAAGTTGCGCTTTAGTCATATAATCTAGCAAACCATCATCCAGAACATAATTGGATTGAGAGTAAAAATCTGCAAACATATTTAAGGGTAAAAGGAAGTTTGCACTTTCTGACTTCTGTCTTATAATCGTCGTTAGCTCCGAAAAACATTTTACCAACAACTTGTCTTCTGTGTTGCCATAACTATCATGTTTTACGCAAGCAGCGTTTACCAGCAGACTGTCTAGTTGCTTTTCAATGGAGCTCTGGGACCATAGTTCAGAACTTGGAATGAGATTATCTTCAACCACATTTTCAGAAACCCATTCAGATAATTTACTTAAACAGTCGAGGCGTGCTGAATTAAGTTGAAATGTTGAATTTTCCTTTAAAGATTTCATTTTGATACACGATGTTACACGGTTCCGGAGTTTATGCGCACAAGTATAGTTACCTTCAGAAAGGTATATTTGAAGAAGGACATTTACGACATACGCTGTAGATGTTCGAACGGAGCATTTATCAGTTTCATTGGTAATGACGTTNTCTGAATTTAAAGCGCTGTTTTTTTGGCAAATTCGAATCAACANAAC ] [-] EMBL CD154911 [ GATAATTTACTTAAACAGTCGAGGCGTGCTGAATTAAGTTGAAATGTTGAATTTTCCTTTAAAGATTTCATTTTGATACACGATGTTACACGGTTCCGGAGTTTATGCGCACAAGTATAGTTACCTTCAGAAAGGTATATTTGAAGAAGGACATTTACGACATACGCTGTAGATGTTCGAACGGAGCATTTATCAGTTTCATTGGTAATGACGTTTTCTGAATTTAAAGCGCTGTTTTTTTGGCAAATTCGAATCAACAAAACTGGTTAATTGTAGAATACCTTGATCCCAACGGCCACGAGTTAGTGAAGAGATGCCATGAAGCCATGAAAGTGGGTTTTTTTCTGCTGTGAAAAGATCATCTGTCCACTGTGCTAATGCTTTCAATTCTTCCCATGCACCTAAATGATGAAGTGCTTTGGATAAATAAATAAATAGATCAGTAGGGTCACCGTATTGTTTTAAGGTGCTGACCCAAATT] consensusID : consensus_9137#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [TGTTTAAACAGTTCTAAGTCATCTTCGTCACAACGATCAGTTGCTAAAAAGGTTGTCAGAGCACTGATTAGAGCAGTTATAAACAAATCAACGTCTTTACTATCATCAGTTGAGTTTTCTAAAGAAAACAACTTTTCAACCAATATATTTAGTGATGTATACTCTTGTGGCTGTACTAATTTTAAAAGTACAGGAACACTAGGGTGATTAGAGGATTTCTCATTTACGACTGTAATAAAATTTCTTGTCGGAATGATGTTTAAACAGTTC] [-] EMBL CD130430 [TGTTTAAACAGTTCTAAGTCATCTTCGTCACAACGATCAGTTGCTAAAAAGGTTGTCAGAGCACTGATTAGAGCAGTTATAAACAAATCAACGTCTTTACTATCATCAGTTGAGTTTTCTAAAGAAAACAACTTTTCAACCAATATATTTAGTGATGTATACTCTTGTGGCTGTACTAATTTTAAAAGTACAGGAACACTAGGGTGATTAGAGGATTTCTCATTTACGACTGTAATAAAATTTCTTGTCGGAATGATGTTTAAACAGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9137#0 ------------------------------------------------------------ consensus_9137#1 TGTTTAAACAGTTCTAAGTCATCTTCGTCACAACGATCAGTTGCTAAAAAGGTTGTCAGA 60 consensus_9137#0 ----------------TTATAAACAAATCAACGTCTTTACTATCATCAGTTGAGTTT-CT 43 consensus_9137#1 GCACTGATTAGAGCAGTTATAAACAAATCAACGTCTTTACTATCATCAGTTGAGTTTTCT 120 ***************************************** ** consensus_9137#0 AAAGAAAACAACTTTTCAACCAATATATTTAGTGATGTATACTCTTGTGGCTGTACTAAT 103 consensus_9137#1 AAAGAAAACAACTTTTCAACCAATATATTTAGTGATGTATACTCTTGTGGCTGTACTAAT 180 ************************************************************ consensus_9137#0 TTTAAAAGTACAGGAACACTAGGGTGATTAGAGGATTTCTCATTTACGACTGTAATAAAA 163 consensus_9137#1 TTTAAAAGTACAGGAACACTAGGGTGATTAGAGGATTTCTCATTTACGACTGTAATAAAA 240 ************************************************************ consensus_9137#0 TTTCTTGCTGCTGACTGGAATTCATGGATCTCTTTTTGTCCACGCAAATAGCACCAGTCG 223 consensus_9137#1 TTTCTTGTCG--GAATGATGTTTAAACAGTTC---------------------------- 270 ******* * ** ** ** * * ** consensus_9137#0 GCCAATTTCAGCCAAACAGATGCAGATGAACCATTTGAAGATAAATGTGTAGCCATCATT 283 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 AGTAAACGATTCGTCCATGAAGTTGAAGAACCGGGGAATGAATTGGAAGATTGAAGGGGT 343 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 TCAGTAATATCTGGCATACCGTTACACCAGGATACATCAGACAAACAACTGAACAATTCA 403 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 AGGTCTGATGCAATACGTAAAAATTTCTGAGACTTTTCTCCTGGTTCGTCTGAGCTAACA 463 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 AAACTATGATATATTTTTTCAGCCAATGAAATGTCGTTGGTGTTTGTAGGTGATTCTAGC 523 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 CAATCGAAAAGACTTAGAGCCATTTCAGCTTCTAAATTACATTTAGATGCAGTTTCAAAT 583 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 GTATCACAACTATATTTTTTCATTAATCCCAATTTCAGACCAGAAGTTAACATTGCTATT 643 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 GCTTTTGTCTTATTAATTAGTTCATGCTCGTCATTTCCACTCCCAAACAACCACAGAATT 703 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 CTGGCCATACAGTTATGGAATTTCAAAGTATCCAATTGAGACAATTTAGATGTTATATCA 763 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 TCTGAGGAAGATAAAGCGACGTTGCAAAGCTTATTAAAATATGTTGCTTCTTTATCCACT 823 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 GAAGTATCAAGAAGTTTGAGACATTTCGCTGTTTTAACAAGCAAACGCCGAGCAAGATAT 883 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 GGACAGTTATTTAAACATGCCCATTGGCAAGCTGAAAATCCAGCGACAGAATGGGCTTTT 943 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 ATATCGGAAGAAATAAGGTTTACCCAAGCAGAATAGTTTATGGGACTTGATGTCCCATAA 1003 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 GTAGTACATGTTCGTTCATTAAGTATAAGTTGCGCTTTAGTCATATAATCTAGCAAACCA 1063 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 TCATCCAGAACATAATTGGATTGAGAGTAAAAATCTGCAAACATATTTAAGGGTAAAAGG 1123 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 AAGTTTGCACTTTCTGACTTCTGTCTTATAATCGTCGTTAGCTCCGAAAAACATTTTACC 1183 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 AACAACTTGTCTTCTGTGTTGCCATAACTATCATGTTTTACGCAAGCAGCGTTTACCAGC 1243 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 AGACTGTCTAGTTGCTTTTCAATGGAGCTCTGGGACCATAGTTCAGAACTTGGAATGAGA 1303 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 TTATCTTCAACCACATTTTCAGAAACCCATTCAGATAATTTACTTAAACAGTCGAGGCGT 1363 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 GCTGAATTAAGTTGAAATGTTGAATTTTCCTTTAAAGATTTCATTTTGATACACGATGTT 1423 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 ACACGGTTCCGGAGTTTATGCGCACAAGTATAGTTACCTTCAGAAAGGTATATTTGAAGA 1483 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 AGGACATTTACGACATACGCTGTAGATGTTCGAACGGAGCATTTATCAGTTTCATTGGTA 1543 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 ATGACGTTNTCTGAATTTAAAGCGCTGTTTTTTTGGCAAATTCGAATCAACANAACTGGT 1603 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 TAATTGTAGAATACCTTGATCCCAACGGCCACGAGTTAGTGAAGAGATGCCATGAAGCCA 1663 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 TGAAAGTGGGTTTTTTTCTGCTGTGAAAAGATCATCTGTCCACTGTGCTAATGCTTTCAA 1723 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 TTCTTCCCATGCACCTAAATGATGAAGTGCTTTGGATAAATAAATAAATAGATCAGTAGG 1783 consensus_9137#1 ------------------------------------------------------------ consensus_9137#0 GTCACCGTATTGTTTTAAGGTGCTGACCCAAATT 1817 consensus_9137#1 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||