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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1083 fasta sequence
[CAGCCAANAATTTGGCACGAGGGCCTCAGTCCTGTATCATTTCCCGTAAAGTGTAATTCAGACAAAATAAGTTGTGACAAACTGGATATACAAAATAATTCACTACCTGCTGACCTAAACCATTCGCCAAAACAATCATTTTCTAACGTTCATCTAATCACTGGCAGCAGTGATCAGTATATTGCTGGTTGGGATGTGAGAAATGTTTCTCAACCGGTTCACAAACACAAGCTCAGCCGTTACCCAAGAAAGCTGTCTCTCCTGGATAAATATGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCAAAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTGGCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGGGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATACTAAACCACGAATGATAACGTTACTCGATCAACGCTTTTTTCTCTTGAGAACTATATATCATTTTTATGTTGAAGAATTTTTAGTGTTTTTATCTTTCGTATGCTAATATGAATTTGAGTTTAGTTGTGCAGTAGCATGAGGTGATTTGAACTTTTTTTATGGTAAGCACTTTGAGTTAATTTTTTACAGACACATGCAATTTAGAACAACATATATAAGCGAACAATATTGTTTTTGACTAGATCTTCATCAGGCTTTAATATACAGTAATATTTGTATGTATATATGAAATTATTATCGTGTTCCTACTAGTTTTCCTTATGGGGTTCGATCTCATCTTTTACACATAGCAGGAGTTACAGGAATTCGAGCTAGCAATCCAAGTCTTTGTATTTGTAAGAATTTTGTTCGTATATTTGTGTTTTAATAATTAAACTTATCAAGAAGCTTGTAATAAAAATTCTG]
[+] EMBL CD081098 [CAGCCAANAATTTGGCACGAGGGCCTCAGTCCTGTATCATTTCCCGTAAAGTGTAATTCAGACAAAATAAGTTGTGACAAACTGGATATACAAAATAATTCACTACCTGCTGACCTAAACCATTCGCCAAAACAATCATTTTCTAACGTTCATCTAATCACTGGCAGCAGTGATCAGTATATTGCTGGTTGGGATGTGAGAAATGTTTCTCAACCGGTTCACAAACACAAGCTCAGCCGTTACCCAAGAAAGCTGTCTCTCCTGGATAAATATGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCAAAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTGGCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGGGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTTACTACTTCATACTAAACCACGAATGATAACGTTACTCGATCAACGCTNTTTTCTCTTGAGAACTATATATCATTTTTATGTTGAAGAATTTTTAGTGTTTTTATCTTTCGTATGCTAATATGA ]
[-] EMBL CD196370 [ GTTTCTCAACCGGTTCACAAACACAAGCTCAGCCGTTACCCAAGAAAGCTGTCTCTCCTGGATAAATATGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCAAAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTGGCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGGGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATACTAAACCACGAATGATAACGTTACTCGATCAA ]
[+] EMBL CD136998 [ atCCAAGAAAGCTGTCTCTCCTGGATAAATATGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCAAAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTGGCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGGGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATACTAAACCACGAATGATAACGTTACTCGATCAACGCTTTTTTCTCTTGAGAACTATATATCATTTTTATGTTGAAGAATTTTTAGTGTTTTTATCTTT ]
[+] EMBL CD133852 [ TGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCAAAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTGGCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGGGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATACTAAACCACGAATGATAACGTTACTCGATCAACGCTTTTTTCTCTTGAGAACTATATATCATTTTTATGTTGAAGAATTTTTAGTGTTTTTATCTTTCGTATGCTAATATGAATTTGAGTTTAGTTGTGCAGTAGCATGAGGTGATTTGAACTTTTTTTATGGTAAGCACTTTGAGTTAATTNTTTACAGACACAT ]
[-] EMBL CD073653 [ CATGG TCTGTGGAAGCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGGGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATACTAAACCACGAATGATAACGTTACTCGATCAACGCTTTTTTCTCTTGAGAACTATATATCATTTTTATGTTGAAGAATTTTTAGTGTTTTTATCTTTCGTATGCTAATATGAATTTGAGTTTAGTTGTGCAGTAGCATGAGGTGATTTGAACTTTTTTTATGGTAAGCACTTTGAGTTAATTTTTTACAGACACATGCAATTTAGAACAACATATATAAGCGAACAATATTGTTTTTGACTAGATCTTCATCAGGCTTTAATATACAGTAATATTTGTATGTATATATGAAATTATTATCGTGTTCCTACTAGTTTTCCTTATGGGGTTCGATCTCATCTTTTACACATAGCAGGAGTTACAGGAATTCGAGCTAGCAATCCAAGTCTTTGTATTTGTAAGAATTTTGTTCGTATATTTGTGTTTTAATAATTAAACTTATCAAGAAGCTTGTAATAAAAATTCTG]
[-] EMBL CD074921 [ GCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGGGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTTACTACTTCATACTAAACCACGAATGATAACGTTACTCGATCAACGCTTTTTTCTCTTGAGAACTATATATCATTTTTATGTTGAAGAATTTTTAGTGTTTTTATCTTTCGTATGCTAATATGAATTTGAGTTTAGTTGTGCAGTAGCATGAGGTGATTTGAACTTTTTTTATGGTAAGCACTTTGAGTTAATTTTTTACAGACACATGCAATTTAGAACAACATATATAAGCGAACAATATTGTTTTTGACTAGATCTTCATCAGGCTTTAATATACAGTAATATTTGTATGTATATATGAAATTATTATCGTGTTCCTACTAGTTTTCCTTATGGGGTTCGATCTCATCTTTTACACATAGCAGGAGTTACAGGAATTCGAGCTAGCAATCCAAGTCTTTGTATTTGTAAGAATTTTGTTCGTATATTTGTGTTTTAATAATTAAACTTATCAAGAAGCTTGTAATAAAAATTCTG]
consensusID : consensus_9139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 951 fasta sequence
[TGTACTGTGTTCAAGCTTTTTGGATTCCAGTACTTTGGCAGTTGGTACACATGATCGAAATGTCTATCTATTGGATATACGTTCGTTTGAACAAAATTCATCAAGTCGTATGTGCCATAAAAAGGCTGTTCTTTGCATAGATGCTATATATGAAAATGGTTTGCGTTCAGCTGTTTCAAGAAACTGTACTTCTACTATGAAAAACTGTATTAACGGTAGCGGTGATAACTGTGACCAGACATGTGTAGAATATGATTATCATTCAGAGTTATCATCTGTAACAGCAAGTGAAGAAAATTTTGGAGACTGTATGATTGATCCGTTTGAAATGGAAAGTATTGTACTGAACAGTCGTGAACCTAGTCCTGTATCATTTCCCGTAAAGTGTAATTCAGACAAAATAAGTTGTGACAAACTGGATATACAAAATAATTCACTACCTGCTGACCTAAACCATTCGCCAAAACAATCATTTTCTAACGTTCATCTAATCACTGGCAGCAGTGATCAGTATATTGCTGGTTGGGATGTGAGAAATGTNTCTCAACCGGTTCACAAACACAAGCTCAGCCGTTACCCAAGAAAGCTGTCTCTCCTGGATAAATATGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCAAAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTGGCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGNGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATA]
[+] EMBL CD185827 [TGTACTGTGTTCAAGCTTTTTGGATTCCAGTACTTTGGCAGTTGGTACACATGATCGAAATGTCTATCTATTGGATATACGTTCGTTTGAACAAAATTCATCAAGTCGTATGTGCCATAAAAAGGCTGTTCTTTGCATAGATGCTATATATGAAAATGGTTTGCGTTCAGCTGTTTCAAGAAACTGTACTTCTACTATGAAAAACTGTATTAACGGTAGCGGTGATAACTGTGACCAGACATGTGTAGAATATGATTATCATTCAGAGTTATCATCTGTAACAGCAAGTGAAGAAAATTTTGGAGACTGTATGATTGATCCGTTTGAAATGGAAAGTATTGTACTGAACAGTCGTGAACCTAGTCCTGTATCATTTCCCGTAAAGTGTAATTCAGACAAAATAAGTTGTGACAAACTGGATATACAAAATAATTCACTACCTGCTGACCTAAACCATTCGCCAAAACAATCATTTTCTAACGTTCATCTAATCACTGGCAGCAGTGATCAGTATATTGCTGGTTGGGATGTGAGAAATGTNTCTCAACCGGTTCACAAACACAAGC ]
[+] EMBL CD079376 [ GAAAATTTTGGAGACTGTATGATTGATCCGTTTGAAATGGAAAGTATTGTACTGAACAGTCGTGAACCTAGTCCTGTATCATTTCCCGTAAAGTGTAATTCAGACAAAATAAGTTGTGACAAACTGGATATACAAAATAATTCACTACCTGCTGACCTAAACCATTCGCCAAAACAATCATTTTCTAACGTTCATCTAATCACTGGCAGCAGTGATCAGTATATTGCTGGTTGGGATGTGAGAAATGTTTCTCAACCGGTTCACAAACACAAGCTCAGCCGTTACCCAAGAAAGCTGTCTCTCCTGGATAAATATGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCAAAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTGGCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGNGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9139#0 ------------------------------------------------------------
consensus_9139#1 TGTACTGTGTTCAAGCTTTTTGGATTCCAGTACTTTGGCAGTTGGTACACATGATCGAAA 60
consensus_9139#0 ------------------------------------------------------------
consensus_9139#1 TGTCTATCTATTGGATATACGTTCGTTTGAACAAAATTCATCAAGTCGTATGTGCCATAA 120
consensus_9139#0 ------------------------------------------------------------
consensus_9139#1 AAAGGCTGTTCTTTGCATAGATGCTATATATGAAAATGGTTTGCGTTCAGCTGTTTCAAG 180
consensus_9139#0 ------------------------------------------------------------
consensus_9139#1 AAACTGTACTTCTACTATGAAAAACTGTATTAACGGTAGCGGTGATAACTGTGACCAGAC 240
consensus_9139#0 ------------------------------------------------------------
consensus_9139#1 ATGTGTAGAATATGATTATCATTCAGAGTTATCATCTGTAACAGCAAGTGAAGAAAATTT 300
consensus_9139#0 ---------------------------------CAGCCAANAATTTGGCA--CGAGGGCC 25
consensus_9139#1 TGGAGACTGTATGATTGATCCGTTTGAAATGGAAAGTATTGTACTGAACAGTCGTGAACC 360
** * * ** ** * **
consensus_9139#0 TCAGTCCTGTATCATTTCCCGTAAAGTGTAATTCAGACAAAATAAGTTGTGACAAACTGG 85
consensus_9139#1 T-AGTCCTGTATCATTTCCCGTAAAGTGTAATTCAGACAAAATAAGTTGTGACAAACTGG 419
* **********************************************************
consensus_9139#0 ATATACAAAATAATTCACTACCTGCTGACCTAAACCATTCGCCAAAACAATCATTTTCTA 145
consensus_9139#1 ATATACAAAATAATTCACTACCTGCTGACCTAAACCATTCGCCAAAACAATCATTTTCTA 479
************************************************************
consensus_9139#0 ACGTTCATCTAATCACTGGCAGCAGTGATCAGTATATTGCTGGTTGGGATGTGAGAAATG 205
consensus_9139#1 ACGTTCATCTAATCACTGGCAGCAGTGATCAGTATATTGCTGGTTGGGATGTGAGAAATG 539
************************************************************
consensus_9139#0 TTTCTCAACCGGTTCACAAACACAAGCTCAGCCGTTACCCAAGAAAGCTGTCTCTCCTGG 265
consensus_9139#1 TNTCTCAACCGGTTCACAAACACAAGCTCAGCCGTTACCCAAGAAAGCTGTCTCTCCTGG 599
* **********************************************************
consensus_9139#0 ATAAATATGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCA 325
consensus_9139#1 ATAAATATGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCA 659
************************************************************
consensus_9139#0 AAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTG 385
consensus_9139#1 AAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTG 719
************************************************************
consensus_9139#0 GCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCAT 445
consensus_9139#1 GCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCAT 779
************************************************************
consensus_9139#0 ATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTG 505
consensus_9139#1 ATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTG 839
************************************************************
consensus_9139#0 CTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGGGAATGGCT 565
consensus_9139#1 CTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGNGAATGGCT 899
*************************************************** ********
consensus_9139#0 CAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATACTAAACCA 625
consensus_9139#1 CAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATA-------- 951
****************************************************
consensus_9139#0 CGAATGATAACGTTACTCGATCAACGCTTTTTTCTCTTGAGAACTATATATCATTTTTAT 685
consensus_9139#1 ------------------------------------------------------------
consensus_9139#0 GTTGAAGAATTTTTAGTGTTTTTATCTTTCGTATGCTAATATGAATTTGAGTTTAGTTGT 745
consensus_9139#1 ------------------------------------------------------------
consensus_9139#0 GCAGTAGCATGAGGTGATTTGAACTTTTTTTATGGTAAGCACTTTGAGTTAATTTTTTAC 805
consensus_9139#1 ------------------------------------------------------------
consensus_9139#0 AGACACATGCAATTTAGAACAACATATATAAGCGAACAATATTGTTTTTGACTAGATCTT 865
consensus_9139#1 ------------------------------------------------------------
consensus_9139#0 CATCAGGCTTTAATATACAGTAATATTTGTATGTATATATGAAATTATTATCGTGTTCCT 925
consensus_9139#1 ------------------------------------------------------------
consensus_9139#0 ACTAGTTTTCCTTATGGGGTTCGATCTCATCTTTTACACATAGCAGGAGTTACAGGAATT 985
consensus_9139#1 ------------------------------------------------------------
consensus_9139#0 CGAGCTAGCAATCCAAGTCTTTGTATTTGTAAGAATTTTGTTCGTATATTTGTGTTTTAA 1045
consensus_9139#1 ------------------------------------------------------------
consensus_9139#0 TAATTAAACTTATCAAGAAGCTTGTAATAAAAATTCTG 1083
consensus_9139#1 --------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||