cluster # 9142

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Schistosoma mansoni
cluster # 9142 cluster # 9142 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9142#0 length = 1148 sequences # 7

consensus_9142#1 length = 545 sequences # 1

consensusID : consensus_9142#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1148
fasta sequence

                              [CTCGCGGCCAGAATTCGGCACGAGGGTTATATCATCTGCTCATTCTAATCATCTTGATGATCATTCGAATGGTTCGGTAATTTATTTAAATCCAACAGGAAACGTCGAAAGACAGTTATCATCCTCTAGAAATCGTATCTCACAAACAAATACAATTGATAAACAAATTAGTTGTGAATCCACTCGAAGTCGTTCACGCACTCCCAGTCATACATCAAATGTTTGGAGTCGTATTATTGAAATTTCTCCTGATGAAGAACTGAATGTAACTGAGCCAAATAAAGAATTGTCATTATTTGAAACCTATCGTTTTATGTTAGGCATTTGTAAATTGAAGCCTATTTTACAATACGTAATGTTATTATTCATTGCCAAGGTTTGCTTCTGTCCTGCGGATGCAATATCTGGACTAAAACTAATCGAGCAAGGTCTACCAAGAGAGAAACTTGTTTTCATTGGGGTTCTACTATTACCGCTTGAAGTGATTCTACCACTACTCATCACTCAAGTGACAAATGGACCGAGATTATTGAAATATTACACATGGGCTTTTTTACCTCGTTTACTTCTAGCAACATTATCTGTTCCGTTGATTTATTTTGCACCGTACTTTAAAATTTCAAATCAAATTCATTCAATCATTCGTAATAATCATACATTAGAAGAGTCAGCTCCCATCCTTGAATCAACTACAACTCATGCATCATTCTCATGGCTTTTCTATGGTATCATGATTTGTCATTTGGCTATTTATACAGTATTCTCTACTGTGATGTTTATTACTCAAGTATCATTTCATGCAAAAATAAGTGATCCAGCTGTGGGTGGAACTTACATGACGTTGTTAAATACTGCAGCTAATTTAGCTACAAGTTTGCCGAATACTCTATTTTTATCACTCGTCGAACCACTCACTCTACGAGTATGCTCTGGAGCTGATATACTAAAAGCTGGGTTATTATCTTTACGAACTGATTCTATTCAATCTGTTAATACAATGAATATAACTCATCCTATACAATATTCAAAAGATGAGATTTATAGAAATGGACAGTTATGGTTGGCTAGTAATGCTACCTGTGAGAATTCTAAAACTATTCAGGCTTGTCTTGATATCAGTGNGACATGTTCAACATTACTAGACGGTT]

[+] EMBL CD077459             [CTCGCGGCCAGAATTCGGCACGAGGGTTATATCATCTGCTCATTCTAATCATCTTGATGATCATTCGAATGGTTCGGTAATTTATTTAAATCCAACAGGAAACGTCGAAAGACAGTTATCATCCTCTAGAAATCGTATCTCACAAACAAATACAATTGATAAACAAATTAGTTGTGAATCCACTCGAAGTCGTTCACGCACTCCCAGTCATACATCANATGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD148205             [                                                                                                               ACAGTTATCATCCTCTAGAAATCGTATCTCACATACAAATACAATTGATAAACAAATTAGTTGTGAATCCACTCGAAGTCGTTCACGCACTCCCAGTCATACATCAAATGTTTGGAGTCGTATTATTGAAATTTCTCCTGATGAAGAACTGAATGTAACTGAGCCAAATAAAGAATTGTCATTATTTGAAACCTATCGTTTTATGTTAGGCATTTGTAAATTGAAGCCTATTTTACAATACGTAATGTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD113316             [                                                                                                                                      GTATCTCACAAACAAATACAATTGATAAACAAATTAGTTGTGAATCCACTCGAAGTCGTTCACGCACTCCCAGTCATACATCAAATGTTTGGAGTCGTATTATTGAAATTTCTCCTGATGAAGAACTGAATGTAACTGAGCCAAATAAAGAATTGTCATTATTTGAAACCTATCGTTTTATGTTAGGCATTTGTAAATTGAAGCCTATTTTACAATACGTAATGTTATTATTCATTGCCAAGGTTTGCTTCTGTCCTGCGGATGCAATATCTGGACTAAAACTAATCGAGCAAGGTCTACCAAGAGAGAAACTTGTTTTCATTGGGGTTCTACTATTACCGCTTGAAGTGATTCTACCACTACTCATCACTCAAGTGACAAATGGACCGAGATTATTGAAATATTACACATGGGCTTTTTTACCTCGTTTACTTCTAGCAACATTATCTGTTCCGTTGATTTATTTTGCACCGTACTTTAAAATTTCAAATCAAATTCATTCAATCATTCGTAATAATCATACATTAGAAGAGTCAGCTCCCATCCTTGAATCAACTACAACTCATGCATCATTCTCATGGCTTTTCTATGGTATCATGATTTGTCATTTGGCTATTTATACAGTATTCTCTACTGTGATGTTTATTACTCAAG                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD161409             [                                                                                                                                                                                                                                                                                                                                                                                                      TGCGGATGCAATATCTGGACTAAAACTAATCGAGCAAGGTCTACCAAGAGAGAAACTTGTTTTCATTGGGGTTCTACTATTACCGCTTGAAGTGATTCTACCACTACTCATCACTCAAGTGACAAATGGACCGAGATTATTGAAATATTACACATGGGCTTTTTTACCTCGTTTACTTCTAGCAACATTATCTGTTCCGTTGATTTATTTTGCACCGTACTTTAAAATTTCAAATCAAATTCATTCAATCACTCGTAATAATCATACATTAGAAGAGTCAGCTCCCATCCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD079117             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGGACCGAGATTATTGAAATATTACACATGGGCTTTTTTACCTCGTTTACTTCTAGCAACATTATCTGTTCCGTTGATTTATTTTGCACCGTACTTTAAAATTTCAAATCAAATTCATTCAATCATTCGTAATAATCATACATTAGAAGAGTCAGCTCCCATCCTTGAATCAACTACAACTCATGCATCATTCTCATGGCTTTTCTATGGTATCATGATTTGTCATTTGGCTATTTATACAGTATTCTCTACTGTGATGTTTATTACTCAAGTATCATTTCATGCAAAAATAAGTGATCCAGCTGTGGGTGGAACTTACATGACGTTGTTAAATACTGCAGCTAATTTAGCTACAAGTTTGCCGAATACTCTATTTTTATCACTCGTCGAACCACTCACTCTACGAGTATGCTCTGGAGCTGATATACTAAAAGCTGGGTTATTATCTTTACGAACTGATTCTATTCAATCTGTTAATACAATGAATATAACTCATCCTATACAATATTCAAAAGATGAGATTTATAGAAATGGACAGTTATGGTTGGCTAGTAATGCTACCTGTGAGAATTCTAAAACTATTCAGGCTTGTCTTGATATCAGTGNGACATGTTCAACATTACTAGACGGTT]
[+] EMBL CD120492             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGGCTATTTATACAGTATTCTCTACTGTGATGTTTATTACTCAGGTATCATTTCTTGCAAAAATAAGTGATCCAGCTGTGGGTGGAACTTACATGACGTTGTTAAATACTGCAGCTAATTTAGCTACAAGTTTGCCGAATACTCTATTTTTATCACTCGTCGAACCACTCACTCTACGAGTATGCTCTGGAGCTGATATACTAAAAGCTGGGTTATTATCTTTACGAACTGATTCTATTCAATCTGTTAATACAATGAATATAACTCATCCTATACAATATTCAAAAGATGAGATTTATAGA                                                                                                       ]
[-] EMBL CD120315             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        nGCTATTTATACAGTATTCTCTACTGTGATGTTTATTACTCAGGTATCATTTCATGCAAAAATAAGTGATCCAGCTGTGGGTGGAACTTACATGACGTTGTTAAATACTGCAGCTAATTTAGCTACAAGTTTGCCGAATACTCTATTTTTATCACTCGTCGAACCACTCACTCTACGAGTATGCTCTGGAGCTGATATACTAAAAGCTGGGTTATTATCTTTACGAACTGATTCTATTCAATCTGTTAATACAAAGAATATAACTCATCCTATACAATATTCAAAAGATGAGATTTATAGAA                                                                                                      ]




>consensus_9142#0
CTCGCGGCCAGAATTCGGCACGAGGGTTATATCATCTGCTCATTCTAATCATCTTGATGA
TCATTCGAATGGTTCGGTAATTTATTTAAATCCAACAGGAAACGTCGAAAGACAGTTATC
ATCCTCTAGAAATCGTATCTCACAAACAAATACAATTGATAAACAAATTAGTTGTGAATC
CACTCGAAGTCGTTCACGCACTCCCAGTCATACATCAAATGTTTGGAGTCGTATTATTGA
AATTTCTCCTGATGAAGAACTGAATGTAACTGAGCCAAATAAAGAATTGTCATTATTTGA
AACCTATCGTTTTATGTTAGGCATTTGTAAATTGAAGCCTATTTTACAATACGTAATGTT
ATTATTCATTGCCAAGGTTTGCTTCTGTCCTGCGGATGCAATATCTGGACTAAAACTAAT
CGAGCAAGGTCTACCAAGAGAGAAACTTGTTTTCATTGGGGTTCTACTATTACCGCTTGA
AGTGATTCTACCACTACTCATCACTCAAGTGACAAATGGACCGAGATTATTGAAATATTA
CACATGGGCTTTTTTACCTCGTTTACTTCTAGCAACATTATCTGTTCCGTTGATTTATTT
TGCACCGTACTTTAAAATTTCAAATCAAATTCATTCAATCATTCGTAATAATCATACATT
AGAAGAGTCAGCTCCCATCCTTGAATCAACTACAACTCATGCATCATTCTCATGGCTTTT
CTATGGTATCATGATTTGTCATTTGGCTATTTATACAGTATTCTCTACTGTGATGTTTAT
TACTCAAGTATCATTTCATGCAAAAATAAGTGATCCAGCTGTGGGTGGAACTTACATGAC
GTTGTTAAATACTGCAGCTAATTTAGCTACAAGTTTGCCGAATACTCTATTTTTATCACT
CGTCGAACCACTCACTCTACGAGTATGCTCTGGAGCTGATATACTAAAAGCTGGGTTATT
ATCTTTACGAACTGATTCTATTCAATCTGTTAATACAATGAATATAACTCATCCTATACA
ATATTCAAAAGATGAGATTTATAGAAATGGACAGTTATGGTTGGCTAGTAATGCTACCTG
TGAGAATTCTAAAACTATTCAGGCTTGTCTTGATATCAGTGNGACATGTTCAACATTACT
AGACGGTT

consensusID : consensus_9142#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence

                              [GGAGGTACCTCATAATCTGTCCGTTATATCATCTGCTCATTCTAATCATCTTGATGATCATTCGAATGGTTCGGTAATTTATTTAAATCCAACAGGAAACGTCGAAAGACAGTTATCATCCTCTAGAAATCGTATCTCACAAACAAATACAGTTGATAAACAAATTAGTTGTGAATCCACTCGAAGTCGTTCACGTACTCCCAGCCATACGTCAAATGTTTGGAGTCGTATTATTGAAATTTCTCCTGATGAAGAACTGAATGTAACTGAGCCAAATAAAGAATTGTCATTATTTGAAACCTATCGTTTTATGTTAGGCATTTGTAAATTGAAGCCTATTTTACAATACGTAATGTTATTATTCATTGCCAAGGTTTGCTTCTGTCCTGCGGATGCAATATCTGGACTAAAACTAATCGAGCAAGGTCTACCAAGAGAGAAACTTGTTTTCATTGGGGTTCTACTATTACCGCTTGAAGTGATTCTACCACTACTCATTACTCAAGTGACAAATGGACCGAGATTATTGAAACATTACGCATAGG]

[+] EMBL CD162618             [GGAGGTACCTCATAATCTGTCCGTTATATCATCTGCTCATTCTAATCATCTTGATGATCATTCGAATGGTTCGGTAATTTATTTAAATCCAACAGGAAACGTCGAAAGACAGTTATCATCCTCTAGAAATCGTATCTCACAAACAAATACAGTTGATAAACAAATTAGTTGTGAATCCACTCGAAGTCGTTCACGTACTCCCAGCCATACGTCAAATGTTTGGAGTCGTATTATTGAAATTTCTCCTGATGAAGAACTGAATGTAACTGAGCCAAATAAAGAATTGTCATTATTTGAAACCTATCGTTTTATGTTAGGCATTTGTAAATTGAAGCCTATTTTACAATACGTAATGTTATTATTCATTGCCAAGGTTTGCTTCTGTCCTGCGGATGCAATATCTGGACTAAAACTAATCGAGCAAGGTCTACCAAGAGAGAAACTTGTTTTCATTGGGGTTCTACTATTACCGCTTGAAGTGATTCTACCACTACTCATTACTCAAGTGACAAATGGACCGAGATTATTGAAACATTACGCATAGG]




>consensus_9142#1
GGAGGTACCTCATAATCTGTCCGTTATATCATCTGCTCATTCTAATCATCTTGATGATCA
TTCGAATGGTTCGGTAATTTATTTAAATCCAACAGGAAACGTCGAAAGACAGTTATCATC
CTCTAGAAATCGTATCTCACAAACAAATACAGTTGATAAACAAATTAGTTGTGAATCCAC
TCGAAGTCGTTCACGTACTCCCAGCCATACGTCAAATGTTTGGAGTCGTATTATTGAAAT
TTCTCCTGATGAAGAACTGAATGTAACTGAGCCAAATAAAGAATTGTCATTATTTGAAAC
CTATCGTTTTATGTTAGGCATTTGTAAATTGAAGCCTATTTTACAATACGTAATGTTATT
ATTCATTGCCAAGGTTTGCTTCTGTCCTGCGGATGCAATATCTGGACTAAAACTAATCGA
GCAAGGTCTACCAAGAGAGAAACTTGTTTTCATTGGGGTTCTACTATTACCGCTTGAAGT
GATTCTACCACTACTCATTACTCAAGTGACAAATGGACCGAGATTATTGAAACATTACGC
ATAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9142#0      CTCGCGGCCAGAATTCGGCACGAGGGTTATATCATCTGCTCATTCTAATCATCTTGATGA 60
consensus_9142#1      ---GGAGGTACCTCATAATCTGTCCGTTATATCATCTGCTCATTCTAATCATCTTGATGA 57
                         *  *  *           *   ***********************************

consensus_9142#0      TCATTCGAATGGTTCGGTAATTTATTTAAATCCAACAGGAAACGTCGAAAGACAGTTATC 120
consensus_9142#1      TCATTCGAATGGTTCGGTAATTTATTTAAATCCAACAGGAAACGTCGAAAGACAGTTATC 117
                      ************************************************************

consensus_9142#0      ATCCTCTAGAAATCGTATCTCACAAACAAATACAATTGATAAACAAATTAGTTGTGAATC 180
consensus_9142#1      ATCCTCTAGAAATCGTATCTCACAAACAAATACAGTTGATAAACAAATTAGTTGTGAATC 177
                      ********************************** *************************

consensus_9142#0      CACTCGAAGTCGTTCACGCACTCCCAGTCATACATCAAATGTTTGGAGTCGTATTATTGA 240
consensus_9142#1      CACTCGAAGTCGTTCACGTACTCCCAGCCATACGTCAAATGTTTGGAGTCGTATTATTGA 237
                      ****************** ******** ***** **************************

consensus_9142#0      AATTTCTCCTGATGAAGAACTGAATGTAACTGAGCCAAATAAAGAATTGTCATTATTTGA 300
consensus_9142#1      AATTTCTCCTGATGAAGAACTGAATGTAACTGAGCCAAATAAAGAATTGTCATTATTTGA 297
                      ************************************************************

consensus_9142#0      AACCTATCGTTTTATGTTAGGCATTTGTAAATTGAAGCCTATTTTACAATACGTAATGTT 360
consensus_9142#1      AACCTATCGTTTTATGTTAGGCATTTGTAAATTGAAGCCTATTTTACAATACGTAATGTT 357
                      ************************************************************

consensus_9142#0      ATTATTCATTGCCAAGGTTTGCTTCTGTCCTGCGGATGCAATATCTGGACTAAAACTAAT 420
consensus_9142#1      ATTATTCATTGCCAAGGTTTGCTTCTGTCCTGCGGATGCAATATCTGGACTAAAACTAAT 417
                      ************************************************************

consensus_9142#0      CGAGCAAGGTCTACCAAGAGAGAAACTTGTTTTCATTGGGGTTCTACTATTACCGCTTGA 480
consensus_9142#1      CGAGCAAGGTCTACCAAGAGAGAAACTTGTTTTCATTGGGGTTCTACTATTACCGCTTGA 477
                      ************************************************************

consensus_9142#0      AGTGATTCTACCACTACTCATCACTCAAGTGACAAATGGACCGAGATTATTGAAATATTA 540
consensus_9142#1      AGTGATTCTACCACTACTCATTACTCAAGTGACAAATGGACCGAGATTATTGAAACATTA 537
                      ********************* ********************************* ****

consensus_9142#0      CACATGGGCTTTTTTACCTCGTTTACTTCTAGCAACATTATCTGTTCCGTTGATTTATTT 600
consensus_9142#1      CGCATAGG---------------------------------------------------- 545
                      * *** **                                                    

consensus_9142#0      TGCACCGTACTTTAAAATTTCAAATCAAATTCATTCAATCATTCGTAATAATCATACATT 660
consensus_9142#1      ------------------------------------------------------------
                                                                                  

consensus_9142#0      AGAAGAGTCAGCTCCCATCCTTGAATCAACTACAACTCATGCATCATTCTCATGGCTTTT 720
consensus_9142#1      ------------------------------------------------------------
                                                                                  

consensus_9142#0      CTATGGTATCATGATTTGTCATTTGGCTATTTATACAGTATTCTCTACTGTGATGTTTAT 780
consensus_9142#1      ------------------------------------------------------------
                                                                                  

consensus_9142#0      TACTCAAGTATCATTTCATGCAAAAATAAGTGATCCAGCTGTGGGTGGAACTTACATGAC 840
consensus_9142#1      ------------------------------------------------------------
                                                                                  

consensus_9142#0      GTTGTTAAATACTGCAGCTAATTTAGCTACAAGTTTGCCGAATACTCTATTTTTATCACT 900
consensus_9142#1      ------------------------------------------------------------
                                                                                  

consensus_9142#0      CGTCGAACCACTCACTCTACGAGTATGCTCTGGAGCTGATATACTAAAAGCTGGGTTATT 960
consensus_9142#1      ------------------------------------------------------------
                                                                                  

consensus_9142#0      ATCTTTACGAACTGATTCTATTCAATCTGTTAATACAATGAATATAACTCATCCTATACA 1020
consensus_9142#1      ------------------------------------------------------------
                                                                                  

consensus_9142#0      ATATTCAAAAGATGAGATTTATAGAAATGGACAGTTATGGTTGGCTAGTAATGCTACCTG 1080
consensus_9142#1      ------------------------------------------------------------
                                                                                  

consensus_9142#0      TGAGAATTCTAAAACTATTCAGGCTTGTCTTGATATCAGTGNGACATGTTCAACATTACT 1140
consensus_9142#1      ------------------------------------------------------------
                                                                                  

consensus_9142#0      AGACGGTT 1148
consensus_9142#1      --------