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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1148 fasta sequence
[CTCGCGGCCAGAATTCGGCACGAGGGTTATATCATCTGCTCATTCTAATCATCTTGATGATCATTCGAATGGTTCGGTAATTTATTTAAATCCAACAGGAAACGTCGAAAGACAGTTATCATCCTCTAGAAATCGTATCTCACAAACAAATACAATTGATAAACAAATTAGTTGTGAATCCACTCGAAGTCGTTCACGCACTCCCAGTCATACATCAAATGTTTGGAGTCGTATTATTGAAATTTCTCCTGATGAAGAACTGAATGTAACTGAGCCAAATAAAGAATTGTCATTATTTGAAACCTATCGTTTTATGTTAGGCATTTGTAAATTGAAGCCTATTTTACAATACGTAATGTTATTATTCATTGCCAAGGTTTGCTTCTGTCCTGCGGATGCAATATCTGGACTAAAACTAATCGAGCAAGGTCTACCAAGAGAGAAACTTGTTTTCATTGGGGTTCTACTATTACCGCTTGAAGTGATTCTACCACTACTCATCACTCAAGTGACAAATGGACCGAGATTATTGAAATATTACACATGGGCTTTTTTACCTCGTTTACTTCTAGCAACATTATCTGTTCCGTTGATTTATTTTGCACCGTACTTTAAAATTTCAAATCAAATTCATTCAATCATTCGTAATAATCATACATTAGAAGAGTCAGCTCCCATCCTTGAATCAACTACAACTCATGCATCATTCTCATGGCTTTTCTATGGTATCATGATTTGTCATTTGGCTATTTATACAGTATTCTCTACTGTGATGTTTATTACTCAAGTATCATTTCATGCAAAAATAAGTGATCCAGCTGTGGGTGGAACTTACATGACGTTGTTAAATACTGCAGCTAATTTAGCTACAAGTTTGCCGAATACTCTATTTTTATCACTCGTCGAACCACTCACTCTACGAGTATGCTCTGGAGCTGATATACTAAAAGCTGGGTTATTATCTTTACGAACTGATTCTATTCAATCTGTTAATACAATGAATATAACTCATCCTATACAATATTCAAAAGATGAGATTTATAGAAATGGACAGTTATGGTTGGCTAGTAATGCTACCTGTGAGAATTCTAAAACTATTCAGGCTTGTCTTGATATCAGTGNGACATGTTCAACATTACTAGACGGTT]
[+] EMBL CD077459 [CTCGCGGCCAGAATTCGGCACGAGGGTTATATCATCTGCTCATTCTAATCATCTTGATGATCATTCGAATGGTTCGGTAATTTATTTAAATCCAACAGGAAACGTCGAAAGACAGTTATCATCCTCTAGAAATCGTATCTCACAAACAAATACAATTGATAAACAAATTAGTTGTGAATCCACTCGAAGTCGTTCACGCACTCCCAGTCATACATCANATGTT ]
[-] EMBL CD148205 [ ACAGTTATCATCCTCTAGAAATCGTATCTCACATACAAATACAATTGATAAACAAATTAGTTGTGAATCCACTCGAAGTCGTTCACGCACTCCCAGTCATACATCAAATGTTTGGAGTCGTATTATTGAAATTTCTCCTGATGAAGAACTGAATGTAACTGAGCCAAATAAAGAATTGTCATTATTTGAAACCTATCGTTTTATGTTAGGCATTTGTAAATTGAAGCCTATTTTACAATACGTAATGTTAT ]
[+] EMBL CD113316 [ GTATCTCACAAACAAATACAATTGATAAACAAATTAGTTGTGAATCCACTCGAAGTCGTTCACGCACTCCCAGTCATACATCAAATGTTTGGAGTCGTATTATTGAAATTTCTCCTGATGAAGAACTGAATGTAACTGAGCCAAATAAAGAATTGTCATTATTTGAAACCTATCGTTTTATGTTAGGCATTTGTAAATTGAAGCCTATTTTACAATACGTAATGTTATTATTCATTGCCAAGGTTTGCTTCTGTCCTGCGGATGCAATATCTGGACTAAAACTAATCGAGCAAGGTCTACCAAGAGAGAAACTTGTTTTCATTGGGGTTCTACTATTACCGCTTGAAGTGATTCTACCACTACTCATCACTCAAGTGACAAATGGACCGAGATTATTGAAATATTACACATGGGCTTTTTTACCTCGTTTACTTCTAGCAACATTATCTGTTCCGTTGATTTATTTTGCACCGTACTTTAAAATTTCAAATCAAATTCATTCAATCATTCGTAATAATCATACATTAGAAGAGTCAGCTCCCATCCTTGAATCAACTACAACTCATGCATCATTCTCATGGCTTTTCTATGGTATCATGATTTGTCATTTGGCTATTTATACAGTATTCTCTACTGTGATGTTTATTACTCAAG ]
[+] EMBL CD161409 [ TGCGGATGCAATATCTGGACTAAAACTAATCGAGCAAGGTCTACCAAGAGAGAAACTTGTTTTCATTGGGGTTCTACTATTACCGCTTGAAGTGATTCTACCACTACTCATCACTCAAGTGACAAATGGACCGAGATTATTGAAATATTACACATGGGCTTTTTTACCTCGTTTACTTCTAGCAACATTATCTGTTCCGTTGATTTATTTTGCACCGTACTTTAAAATTTCAAATCAAATTCATTCAATCACTCGTAATAATCATACATTAGAAGAGTCAGCTCCCATCCTT ]
[+] EMBL CD079117 [ TGGACCGAGATTATTGAAATATTACACATGGGCTTTTTTACCTCGTTTACTTCTAGCAACATTATCTGTTCCGTTGATTTATTTTGCACCGTACTTTAAAATTTCAAATCAAATTCATTCAATCATTCGTAATAATCATACATTAGAAGAGTCAGCTCCCATCCTTGAATCAACTACAACTCATGCATCATTCTCATGGCTTTTCTATGGTATCATGATTTGTCATTTGGCTATTTATACAGTATTCTCTACTGTGATGTTTATTACTCAAGTATCATTTCATGCAAAAATAAGTGATCCAGCTGTGGGTGGAACTTACATGACGTTGTTAAATACTGCAGCTAATTTAGCTACAAGTTTGCCGAATACTCTATTTTTATCACTCGTCGAACCACTCACTCTACGAGTATGCTCTGGAGCTGATATACTAAAAGCTGGGTTATTATCTTTACGAACTGATTCTATTCAATCTGTTAATACAATGAATATAACTCATCCTATACAATATTCAAAAGATGAGATTTATAGAAATGGACAGTTATGGTTGGCTAGTAATGCTACCTGTGAGAATTCTAAAACTATTCAGGCTTGTCTTGATATCAGTGNGACATGTTCAACATTACTAGACGGTT]
[+] EMBL CD120492 [ TGGCTATTTATACAGTATTCTCTACTGTGATGTTTATTACTCAGGTATCATTTCTTGCAAAAATAAGTGATCCAGCTGTGGGTGGAACTTACATGACGTTGTTAAATACTGCAGCTAATTTAGCTACAAGTTTGCCGAATACTCTATTTTTATCACTCGTCGAACCACTCACTCTACGAGTATGCTCTGGAGCTGATATACTAAAAGCTGGGTTATTATCTTTACGAACTGATTCTATTCAATCTGTTAATACAATGAATATAACTCATCCTATACAATATTCAAAAGATGAGATTTATAGA ]
[-] EMBL CD120315 [ nGCTATTTATACAGTATTCTCTACTGTGATGTTTATTACTCAGGTATCATTTCATGCAAAAATAAGTGATCCAGCTGTGGGTGGAACTTACATGACGTTGTTAAATACTGCAGCTAATTTAGCTACAAGTTTGCCGAATACTCTATTTTTATCACTCGTCGAACCACTCACTCTACGAGTATGCTCTGGAGCTGATATACTAAAAGCTGGGTTATTATCTTTACGAACTGATTCTATTCAATCTGTTAATACAAAGAATATAACTCATCCTATACAATATTCAAAAGATGAGATTTATAGAA ]
consensusID : consensus_9142#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence
[GGAGGTACCTCATAATCTGTCCGTTATATCATCTGCTCATTCTAATCATCTTGATGATCATTCGAATGGTTCGGTAATTTATTTAAATCCAACAGGAAACGTCGAAAGACAGTTATCATCCTCTAGAAATCGTATCTCACAAACAAATACAGTTGATAAACAAATTAGTTGTGAATCCACTCGAAGTCGTTCACGTACTCCCAGCCATACGTCAAATGTTTGGAGTCGTATTATTGAAATTTCTCCTGATGAAGAACTGAATGTAACTGAGCCAAATAAAGAATTGTCATTATTTGAAACCTATCGTTTTATGTTAGGCATTTGTAAATTGAAGCCTATTTTACAATACGTAATGTTATTATTCATTGCCAAGGTTTGCTTCTGTCCTGCGGATGCAATATCTGGACTAAAACTAATCGAGCAAGGTCTACCAAGAGAGAAACTTGTTTTCATTGGGGTTCTACTATTACCGCTTGAAGTGATTCTACCACTACTCATTACTCAAGTGACAAATGGACCGAGATTATTGAAACATTACGCATAGG]
[+] EMBL CD162618 [GGAGGTACCTCATAATCTGTCCGTTATATCATCTGCTCATTCTAATCATCTTGATGATCATTCGAATGGTTCGGTAATTTATTTAAATCCAACAGGAAACGTCGAAAGACAGTTATCATCCTCTAGAAATCGTATCTCACAAACAAATACAGTTGATAAACAAATTAGTTGTGAATCCACTCGAAGTCGTTCACGTACTCCCAGCCATACGTCAAATGTTTGGAGTCGTATTATTGAAATTTCTCCTGATGAAGAACTGAATGTAACTGAGCCAAATAAAGAATTGTCATTATTTGAAACCTATCGTTTTATGTTAGGCATTTGTAAATTGAAGCCTATTTTACAATACGTAATGTTATTATTCATTGCCAAGGTTTGCTTCTGTCCTGCGGATGCAATATCTGGACTAAAACTAATCGAGCAAGGTCTACCAAGAGAGAAACTTGTTTTCATTGGGGTTCTACTATTACCGCTTGAAGTGATTCTACCACTACTCATTACTCAAGTGACAAATGGACCGAGATTATTGAAACATTACGCATAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9142#0 CTCGCGGCCAGAATTCGGCACGAGGGTTATATCATCTGCTCATTCTAATCATCTTGATGA 60
consensus_9142#1 ---GGAGGTACCTCATAATCTGTCCGTTATATCATCTGCTCATTCTAATCATCTTGATGA 57
* * * * ***********************************
consensus_9142#0 TCATTCGAATGGTTCGGTAATTTATTTAAATCCAACAGGAAACGTCGAAAGACAGTTATC 120
consensus_9142#1 TCATTCGAATGGTTCGGTAATTTATTTAAATCCAACAGGAAACGTCGAAAGACAGTTATC 117
************************************************************
consensus_9142#0 ATCCTCTAGAAATCGTATCTCACAAACAAATACAATTGATAAACAAATTAGTTGTGAATC 180
consensus_9142#1 ATCCTCTAGAAATCGTATCTCACAAACAAATACAGTTGATAAACAAATTAGTTGTGAATC 177
********************************** *************************
consensus_9142#0 CACTCGAAGTCGTTCACGCACTCCCAGTCATACATCAAATGTTTGGAGTCGTATTATTGA 240
consensus_9142#1 CACTCGAAGTCGTTCACGTACTCCCAGCCATACGTCAAATGTTTGGAGTCGTATTATTGA 237
****************** ******** ***** **************************
consensus_9142#0 AATTTCTCCTGATGAAGAACTGAATGTAACTGAGCCAAATAAAGAATTGTCATTATTTGA 300
consensus_9142#1 AATTTCTCCTGATGAAGAACTGAATGTAACTGAGCCAAATAAAGAATTGTCATTATTTGA 297
************************************************************
consensus_9142#0 AACCTATCGTTTTATGTTAGGCATTTGTAAATTGAAGCCTATTTTACAATACGTAATGTT 360
consensus_9142#1 AACCTATCGTTTTATGTTAGGCATTTGTAAATTGAAGCCTATTTTACAATACGTAATGTT 357
************************************************************
consensus_9142#0 ATTATTCATTGCCAAGGTTTGCTTCTGTCCTGCGGATGCAATATCTGGACTAAAACTAAT 420
consensus_9142#1 ATTATTCATTGCCAAGGTTTGCTTCTGTCCTGCGGATGCAATATCTGGACTAAAACTAAT 417
************************************************************
consensus_9142#0 CGAGCAAGGTCTACCAAGAGAGAAACTTGTTTTCATTGGGGTTCTACTATTACCGCTTGA 480
consensus_9142#1 CGAGCAAGGTCTACCAAGAGAGAAACTTGTTTTCATTGGGGTTCTACTATTACCGCTTGA 477
************************************************************
consensus_9142#0 AGTGATTCTACCACTACTCATCACTCAAGTGACAAATGGACCGAGATTATTGAAATATTA 540
consensus_9142#1 AGTGATTCTACCACTACTCATTACTCAAGTGACAAATGGACCGAGATTATTGAAACATTA 537
********************* ********************************* ****
consensus_9142#0 CACATGGGCTTTTTTACCTCGTTTACTTCTAGCAACATTATCTGTTCCGTTGATTTATTT 600
consensus_9142#1 CGCATAGG---------------------------------------------------- 545
* *** **
consensus_9142#0 TGCACCGTACTTTAAAATTTCAAATCAAATTCATTCAATCATTCGTAATAATCATACATT 660
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 AGAAGAGTCAGCTCCCATCCTTGAATCAACTACAACTCATGCATCATTCTCATGGCTTTT 720
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 CTATGGTATCATGATTTGTCATTTGGCTATTTATACAGTATTCTCTACTGTGATGTTTAT 780
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 TACTCAAGTATCATTTCATGCAAAAATAAGTGATCCAGCTGTGGGTGGAACTTACATGAC 840
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 GTTGTTAAATACTGCAGCTAATTTAGCTACAAGTTTGCCGAATACTCTATTTTTATCACT 900
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 CGTCGAACCACTCACTCTACGAGTATGCTCTGGAGCTGATATACTAAAAGCTGGGTTATT 960
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 ATCTTTACGAACTGATTCTATTCAATCTGTTAATACAATGAATATAACTCATCCTATACA 1020
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 ATATTCAAAAGATGAGATTTATAGAAATGGACAGTTATGGTTGGCTAGTAATGCTACCTG 1080
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 TGAGAATTCTAAAACTATTCAGGCTTGTCTTGATATCAGTGNGACATGTTCAACATTACT 1140
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 AGACGGTT 1148
consensus_9142#1 --------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||