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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1008 fasta sequence
[ACGACTCACTGTCTGAGTATGCACTACCGCGGTTTCGAACCCTTAAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACATTGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTAACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTGAATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCAAAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAAATTTTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTTTAATCTTCCAATTAATGCCATCACATCCCTCCAGCAAACAAAAACTAAACAGTTAATAGAATGTTCAATGAAATGAATCCATTCACAGTTCATAAAATGGGATTGTGCCCTTGATCGATTGTCTATTG-TCCAAAAAATAACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATTGAAATAAACAAGGAAACTGATTTTTTCCTGTATGTCATTCGACTGAGCATAGATTGTCTCCTGAAACTTC-GTAGTAATGGTGAGAATGCCATAATTAGCTGTATTTTCATTTTTCATACTTACG]
[+] EMBL CD079304 [ACGACTCACTGTCTGAGTATGCACTACCGCGGTTTCGAACCCTTAAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACATTGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTAACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTGAATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCANAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAANATCTAGAGGAAGTTCTTGAAACATANATTTTANGAGAAGACTTATC ]
[+] EMBL CD079092 [ CGTGAATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCAAAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAAATTTTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTTTAATCTTCCAATTAATGCCATCACATCCCTCCAGCANACAAAAACTAAACAGTTAATAGAATGTTCAATGAAATGAATTCATTCACAGTTCATAAAATGGGATTGTGCCCTTGATCTATTGTCTATTG TCC AAAAATAACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATTGAAATAnna ]
[-] EMBL BG932109 [ CTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGACACacc ]
[-] EMBL CD074993 [ GAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCAAAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAAATTTTAGGAGAAGACTTATCCCTATATGTTTCCCAACATATATATTTTAATCTTCCAATTAATGCCATCACATCCCTCCAGCAAACAAAAACTAAACAGTTAATAGAATGTTCAATGAAATGAATCCATTCCCAGTTCATAAAATGGGATTGTGCCCTTGATCGATTGTTTATTG TCCAAAAAATAACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATTGAAATAAACAAGGAAACTGATTTTTTCCTGTATGTCATTCGACTGAGCATAGATTGTCTCCTGAAACTTC GTAGTAATGGTGAGAATGCCATAATTAGCTGTATTTTCATTTTTCATACTTACG]
[-] EMBL CD075300 [ GGAGAACGTTTACTAGTCACTGGATTTTTTTTTTATTATCGATCACGTAAACCTGATGGAACGACTCAAAGAAACTGGTGGGTCACGGGTCAGGGCATCGGTTATATGGGTTGGTTTAATGATTATCAGTCCAGTGAAAATTTAGAGGAAGTTTTTGAAACATAAATTTTAGGAGAAGACTTATCCCTATATGTTTCCCAACATATATATTTTAATTTTCCAATTAAAGCCATCACATCCCTCCAGCAAACAAAAAATAAACAGTTAATAGAATGTTCAATGAAATGAATCCATTCCCAGTTCATAAAATGGGATTGTGCCCTTGATCGATTGTTTATTG TCCAAAAAATAACGTTTAATTTATACCTATTTTGTTTTAAATTTTGCATGGGCAAATATTTTATTGAAATAAACA ]
[+] EMBL SMAA40621 [ GAAACATAAATTTTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTTTAATCTTCCAATTAATGCCATCACATCCCTCCAGCAAACAAAAACTAAACAGTTAATAGAATGTTCAATGAAATGAATCCATTCACAGTTCATAAAATGGGATTGTGCCCTTGATCGATTGTCTATTG TCCAAAAAATAACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATTGAAATAAACAAGGAAACTGATTTTTTCCTGTATGTCATTCGACTGAGCATAGATTGTCTCCTGAAACTTCGGTAGTANTGGTTAGAATGCCATAATTAGCTGTATTTTCATCACTAATACTTAC ]
[-] EMBL CD073545 [ AGTTCATAAAATGGGATTGTGCCCCTGATCTATTGTCTATTGTTCCCAAAAA AACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATTGAAATAAACA ]
consensusID : consensus_9144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 885 fasta sequence
[GAGGCCAAGATTCGGCACGAGGCGCCTTGTAACATTTGTAACATGGTTTCGAACCCTTAAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACATTGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTAACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTGAATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCANAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAAATTNTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTNTAATCTTCCAATTATGCCATCACATCCNTNNCAGCAACNAACTAANCAGTTNATAGAATGGTCATGAAATGNAATCATCACAGTCATAAATGGGGATGTGCCNTGATCGANTGNCTATGGTCAAAAATACGNTAAATCATACTATTCGTTNAAATCTGCATGGCAATATTTATTGAATAA]
[+] EMBL CD081476 [GAGGCCAAGATTCGGCACGAGGCGCCTTGTAACATTTGTAACATGGTTTCGAACCCTTAAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACATTGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTAACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTGAATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCANAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAAATTNTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTNTAATCTTCCAATTATGCCATCACATCCNTNNCAGCAACNAACTAANCAGTTNATAGAATGGTCATGAAATGNAATCATCACAGTCATAAATGGGGATGTGCCNTGATCGANTGNCTATGGTCAAAAATACGNTAAATCATACTATTCGTTNAAATCTGCATGGCAATATTTATTGAATAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9144#0 ----------------ACGACTCACTGTCTGAGTATGCACTACCGCGGTTTCGAACCCTT 44
consensus_9144#1 GAGGCCAAGATTCGGCACGAGGCGCCTTGT-AACATTTG-TAACATGGTTTCGAACCCTT 58
**** * * * * * ** ** * **************
consensus_9144#0 AAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACAT 104
consensus_9144#1 AAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACAT 118
************************************************************
consensus_9144#0 TGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTA 164
consensus_9144#1 TGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTA 178
************************************************************
consensus_9144#0 ACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTG 224
consensus_9144#1 ACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTG 238
************************************************************
consensus_9144#0 AATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACAT 284
consensus_9144#1 AATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACAT 298
************************************************************
consensus_9144#0 CCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCT 344
consensus_9144#1 CCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCT 358
************************************************************
consensus_9144#0 GAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATA 404
consensus_9144#1 GAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATA 418
************************************************************
consensus_9144#0 GCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTT 464
consensus_9144#1 GCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTT 478
************************************************************
consensus_9144#0 AGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCA 524
consensus_9144#1 AGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCA 538
************************************************************
consensus_9144#0 CGTAAACCTGATGGAACGACTCAAAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTAT 584
consensus_9144#1 CGTAAACCTGATGGAACGACTCANAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTAT 598
*********************** ************************************
consensus_9144#0 ATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAA 644
consensus_9144#1 ATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAA 658
************************************************************
consensus_9144#0 ATTTTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTTTAATCTTCCAATT 704
consensus_9144#1 ATTNTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTNTAATCTTCCAATT 718
*** ****************************************** *************
consensus_9144#0 AATGCCATCACATCCCTCCAGCAAACAAAAACTAAACAGTTAATAGAATGTTCAATGAAA 764
consensus_9144#1 A-TGCCATCACATCCNTN--NCAGCAACNAACTAANCAGTTNATAGAATGGTCA-TGAAA 774
* ************* * ** * ****** ***** ******** *** *****
consensus_9144#0 TGAATCCATTCACAGTTCATAAAATGGGATTGTGCCCTTGATCGATTGTCTATTGTCCAA 824
consensus_9144#1 TGNAATCAT-CACAGT-CATAAA-TGGGGATGTGCCNT-GATCGANTGNCTATGGTC--A 828
** * *** ****** ****** **** ****** * ****** ** **** *** *
consensus_9144#0 AAAATAACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATT 884
consensus_9144#1 AAAATA-CGNTAAATC-ATACT--ATTCGTTN-AAATCT-GCATG-GCAA-TATTT-ATT 879
****** ** * **** **** ****** ****** ***** **** ***** ***
consensus_9144#0 GAAATAAACAAGGAAACTGATTTTTTCCTGTATGTCATTCGACTGAGCATAGATTGTCTC 944
consensus_9144#1 GAA-TAA----------------------------------------------------- 885
*** ***
consensus_9144#0 CTGAAACTTCGTAGTAATGGTGAGAATGCCATAATTAGCTGTATTTTCATTTTTCATACT 1004
consensus_9144#1 ------------------------------------------------------------
consensus_9144#0 TACG 1008
consensus_9144#1 ----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||