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Schistosoma mansoni
cluster # 9144 cluster # 9144       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9144#0 length = 1008 sequences # 7  
consensus_9144#1 length = 885 sequences # 1  

consensusID : consensus_9144#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1008
fasta sequence
                              [ACGACTCACTGTCTGAGTATGCACTACCGCGGTTTCGAACCCTTAAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACATTGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTAACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTGAATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCAAAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAAATTTTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTTTAATCTTCCAATTAATGCCATCACATCCCTCCAGCAAACAAAAACTAAACAGTTAATAGAATGTTCAATGAAATGAATCCATTCACAGTTCATAAAATGGGATTGTGCCCTTGATCGATTGTCTATTG-TCCAAAAAATAACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATTGAAATAAACAAGGAAACTGATTTTTTCCTGTATGTCATTCGACTGAGCATAGATTGTCTCCTGAAACTTC-GTAGTAATGGTGAGAATGCCATAATTAGCTGTATTTTCATTTTTCATACTTACG]

[+] EMBL CD079304             [ACGACTCACTGTCTGAGTATGCACTACCGCGGTTTCGAACCCTTAAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACATTGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTAACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTGAATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCANAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAANATCTAGAGGAAGTTCTTGAAACATANATTTTANGAGAAGACTTATC                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD079092             [                                                                                                                                                                                                                            CGTGAATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCAAAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAAATTTTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTTTAATCTTCCAATTAATGCCATCACATCCCTCCAGCANACAAAAACTAAACAGTTAATAGAATGTTCAATGAAATGAATTCATTCACAGTTCATAAAATGGGATTGTGCCCTTGATCTATTGTCTATTG TCC AAAAATAACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATTGAAATAnna                                                                                                                    ]
[-] EMBL BG932109             [                                                                                                                                                                                                                                               CTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGACACacc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD074993             [                                                                                                                                                                                                                                                                                                                           GAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCAAAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAAATTTTAGGAGAAGACTTATCCCTATATGTTTCCCAACATATATATTTTAATCTTCCAATTAATGCCATCACATCCCTCCAGCAAACAAAAACTAAACAGTTAATAGAATGTTCAATGAAATGAATCCATTCCCAGTTCATAAAATGGGATTGTGCCCTTGATCGATTGTTTATTG TCCAAAAAATAACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATTGAAATAAACAAGGAAACTGATTTTTTCCTGTATGTCATTCGACTGAGCATAGATTGTCTCCTGAAACTTC GTAGTAATGGTGAGAATGCCATAATTAGCTGTATTTTCATTTTTCATACTTACG]
[-] EMBL CD075300             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGAGAACGTTTACTAGTCACTGGATTTTTTTTTTATTATCGATCACGTAAACCTGATGGAACGACTCAAAGAAACTGGTGGGTCACGGGTCAGGGCATCGGTTATATGGGTTGGTTTAATGATTATCAGTCCAGTGAAAATTTAGAGGAAGTTTTTGAAACATAAATTTTAGGAGAAGACTTATCCCTATATGTTTCCCAACATATATATTTTAATTTTCCAATTAAAGCCATCACATCCCTCCAGCAAACAAAAAATAAACAGTTAATAGAATGTTCAATGAAATGAATCCATTCCCAGTTCATAAAATGGGATTGTGCCCTTGATCGATTGTTTATTG TCCAAAAAATAACGTTTAATTTATACCTATTTTGTTTTAAATTTTGCATGGGCAAATATTTTATTGAAATAAACA                                                                                                                   ]
[+] EMBL SMAA40621            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GAAACATAAATTTTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTTTAATCTTCCAATTAATGCCATCACATCCCTCCAGCAAACAAAAACTAAACAGTTAATAGAATGTTCAATGAAATGAATCCATTCACAGTTCATAAAATGGGATTGTGCCCTTGATCGATTGTCTATTG TCCAAAAAATAACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATTGAAATAAACAAGGAAACTGATTTTTTCCTGTATGTCATTCGACTGAGCATAGATTGTCTCCTGAAACTTCGGTAGTANTGGTTAGAATGCCATAATTAGCTGTATTTTCATCACTAATACTTAC ]
[-] EMBL CD073545             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGTTCATAAAATGGGATTGTGCCCCTGATCTATTGTCTATTGTTCCCAAAAA AACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATTGAAATAAACA                                                                                                                   ]


>consensus_9144#0 ACGACTCACTGTCTGAGTATGCACTACCGCGGTTTCGAACCCTTAAAATGACTTTCTCCA GACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACATTGTTATGTTAAGAATC GATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTAACTAGTGACCAGGAAT CTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTGAATTCAGTTACGTTAC TCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGA TTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAA CTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACAT CGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTG GAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAA CGACTCAAAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATG ATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAAATTTTAGGAGAAGACT TATCACTATATGTTTCACAACATATATATTTTAATCTTCCAATTAATGCCATCACATCCC TCCAGCAAACAAAAACTAAACAGTTAATAGAATGTTCAATGAAATGAATCCATTCACAGT TCATAAAATGGGATTGTGCCCTTGATCGATTGTCTATTGTCCAAAAAATAACGTTTAATC TATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATTGAAATAAACAAGGAAA CTGATTTTTTCCTGTATGTCATTCGACTGAGCATAGATTGTCTCCTGAAACTTCGTAGTA ATGGTGAGAATGCCATAATTAGCTGTATTTTCATTTTTCATACTTACG



consensusID : consensus_9144#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 885
fasta sequence
                              [GAGGCCAAGATTCGGCACGAGGCGCCTTGTAACATTTGTAACATGGTTTCGAACCCTTAAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACATTGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTAACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTGAATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCANAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAAATTNTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTNTAATCTTCCAATTATGCCATCACATCCNTNNCAGCAACNAACTAANCAGTTNATAGAATGGTCATGAAATGNAATCATCACAGTCATAAATGGGGATGTGCCNTGATCGANTGNCTATGGTCAAAAATACGNTAAATCATACTATTCGTTNAAATCTGCATGGCAATATTTATTGAATAA]

[+] EMBL CD081476             [GAGGCCAAGATTCGGCACGAGGCGCCTTGTAACATTTGTAACATGGTTTCGAACCCTTAAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACATTGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTAACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTGAATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCANAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAAATTNTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTNTAATCTTCCAATTATGCCATCACATCCNTNNCAGCAACNAACTAANCAGTTNATAGAATGGTCATGAAATGNAATCATCACAGTCATAAATGGGGATGTGCCNTGATCGANTGNCTATGGTCAAAAATACGNTAAATCATACTATTCGTTNAAATCTGCATGGCAATATTTATTGAATAA]


>consensus_9144#1 GAGGCCAAGATTCGGCACGAGGCGCCTTGTAACATTTGTAACATGGTTTCGAACCCTTAA AATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACATTG TTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTAAC TAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTGAA TTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCC AGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGA AGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGC ATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAG AGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACG TAAACCTGATGGAACGACTCANAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATAT GGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAAAT TNTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTNTAATCTTCCAATTAT GCCATCACATCCNTNNCAGCAACNAACTAANCAGTTNATAGAATGGTCATGAAATGNAAT CATCACAGTCATAAATGGGGATGTGCCNTGATCGANTGNCTATGGTCAAAAATACGNTAA ATCATACTATTCGTTNAAATCTGCATGGCAATATTTATTGAATAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9144#0      ----------------ACGACTCACTGTCTGAGTATGCACTACCGCGGTTTCGAACCCTT 44
consensus_9144#1      GAGGCCAAGATTCGGCACGAGGCGCCTTGT-AACATTTG-TAACATGGTTTCGAACCCTT 58
                                      ****  * *  * * *  **    ** *  **************

consensus_9144#0      AAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACAT 104
consensus_9144#1      AAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACAT 118
                      ************************************************************

consensus_9144#0      TGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTA 164
consensus_9144#1      TGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTA 178
                      ************************************************************

consensus_9144#0      ACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTG 224
consensus_9144#1      ACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTG 238
                      ************************************************************

consensus_9144#0      AATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACAT 284
consensus_9144#1      AATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACAT 298
                      ************************************************************

consensus_9144#0      CCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCT 344
consensus_9144#1      CCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCT 358
                      ************************************************************

consensus_9144#0      GAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATA 404
consensus_9144#1      GAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATA 418
                      ************************************************************

consensus_9144#0      GCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTT 464
consensus_9144#1      GCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTT 478
                      ************************************************************

consensus_9144#0      AGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCA 524
consensus_9144#1      AGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCA 538
                      ************************************************************

consensus_9144#0      CGTAAACCTGATGGAACGACTCAAAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTAT 584
consensus_9144#1      CGTAAACCTGATGGAACGACTCANAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTAT 598
                      *********************** ************************************

consensus_9144#0      ATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAA 644
consensus_9144#1      ATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAA 658
                      ************************************************************

consensus_9144#0      ATTTTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTTTAATCTTCCAATT 704
consensus_9144#1      ATTNTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTNTAATCTTCCAATT 718
                      *** ****************************************** *************

consensus_9144#0      AATGCCATCACATCCCTCCAGCAAACAAAAACTAAACAGTTAATAGAATGTTCAATGAAA 764
consensus_9144#1      A-TGCCATCACATCCNTN--NCAGCAACNAACTAANCAGTTNATAGAATGGTCA-TGAAA 774
                      * ************* *    **   *  ****** ***** ******** *** *****

consensus_9144#0      TGAATCCATTCACAGTTCATAAAATGGGATTGTGCCCTTGATCGATTGTCTATTGTCCAA 824
consensus_9144#1      TGNAATCAT-CACAGT-CATAAA-TGGGGATGTGCCNT-GATCGANTGNCTATGGTC--A 828
                      ** *  *** ****** ****** ****  ****** * ****** ** **** ***  *

consensus_9144#0      AAAATAACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATT 884
consensus_9144#1      AAAATA-CGNTAAATC-ATACT--ATTCGTTN-AAATCT-GCATG-GCAA-TATTT-ATT 879
                      ****** ** * **** ****    ******  ****** ***** **** ***** ***

consensus_9144#0      GAAATAAACAAGGAAACTGATTTTTTCCTGTATGTCATTCGACTGAGCATAGATTGTCTC 944
consensus_9144#1      GAA-TAA----------------------------------------------------- 885
                      *** ***                                                     

consensus_9144#0      CTGAAACTTCGTAGTAATGGTGAGAATGCCATAATTAGCTGTATTTTCATTTTTCATACT 1004
consensus_9144#1      ------------------------------------------------------------
                                                                                  

consensus_9144#0      TACG 1008
consensus_9144#1      ----
                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)