These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1008 fasta sequence [ACGACTCACTGTCTGAGTATGCACTACCGCGGTTTCGAACCCTTAAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACATTGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTAACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTGAATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCAAAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAAATTTTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTTTAATCTTCCAATTAATGCCATCACATCCCTCCAGCAAACAAAAACTAAACAGTTAATAGAATGTTCAATGAAATGAATCCATTCACAGTTCATAAAATGGGATTGTGCCCTTGATCGATTGTCTATTG-TCCAAAAAATAACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATTGAAATAAACAAGGAAACTGATTTTTTCCTGTATGTCATTCGACTGAGCATAGATTGTCTCCTGAAACTTC-GTAGTAATGGTGAGAATGCCATAATTAGCTGTATTTTCATTTTTCATACTTACG] [+] EMBL CD079304 [ACGACTCACTGTCTGAGTATGCACTACCGCGGTTTCGAACCCTTAAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACATTGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTAACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTGAATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCANAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAANATCTAGAGGAAGTTCTTGAAACATANATTTTANGAGAAGACTTATC ] [+] EMBL CD079092 [ CGTGAATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCAAAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAAATTTTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTTTAATCTTCCAATTAATGCCATCACATCCCTCCAGCANACAAAAACTAAACAGTTAATAGAATGTTCAATGAAATGAATTCATTCACAGTTCATAAAATGGGATTGTGCCCTTGATCTATTGTCTATTG TCC AAAAATAACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATTGAAATAnna ] [-] EMBL BG932109 [ CTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGACACacc ] [-] EMBL CD074993 [ GAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCAAAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAAATTTTAGGAGAAGACTTATCCCTATATGTTTCCCAACATATATATTTTAATCTTCCAATTAATGCCATCACATCCCTCCAGCAAACAAAAACTAAACAGTTAATAGAATGTTCAATGAAATGAATCCATTCCCAGTTCATAAAATGGGATTGTGCCCTTGATCGATTGTTTATTG TCCAAAAAATAACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATTGAAATAAACAAGGAAACTGATTTTTTCCTGTATGTCATTCGACTGAGCATAGATTGTCTCCTGAAACTTC GTAGTAATGGTGAGAATGCCATAATTAGCTGTATTTTCATTTTTCATACTTACG] [-] EMBL CD075300 [ GGAGAACGTTTACTAGTCACTGGATTTTTTTTTTATTATCGATCACGTAAACCTGATGGAACGACTCAAAGAAACTGGTGGGTCACGGGTCAGGGCATCGGTTATATGGGTTGGTTTAATGATTATCAGTCCAGTGAAAATTTAGAGGAAGTTTTTGAAACATAAATTTTAGGAGAAGACTTATCCCTATATGTTTCCCAACATATATATTTTAATTTTCCAATTAAAGCCATCACATCCCTCCAGCAAACAAAAAATAAACAGTTAATAGAATGTTCAATGAAATGAATCCATTCCCAGTTCATAAAATGGGATTGTGCCCTTGATCGATTGTTTATTG TCCAAAAAATAACGTTTAATTTATACCTATTTTGTTTTAAATTTTGCATGGGCAAATATTTTATTGAAATAAACA ] [+] EMBL SMAA40621 [ GAAACATAAATTTTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTTTAATCTTCCAATTAATGCCATCACATCCCTCCAGCAAACAAAAACTAAACAGTTAATAGAATGTTCAATGAAATGAATCCATTCACAGTTCATAAAATGGGATTGTGCCCTTGATCGATTGTCTATTG TCCAAAAAATAACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATTGAAATAAACAAGGAAACTGATTTTTTCCTGTATGTCATTCGACTGAGCATAGATTGTCTCCTGAAACTTCGGTAGTANTGGTTAGAATGCCATAATTAGCTGTATTTTCATCACTAATACTTAC ] [-] EMBL CD073545 [ AGTTCATAAAATGGGATTGTGCCCCTGATCTATTGTCTATTGTTCCCAAAAA AACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATTGAAATAAACA ] consensusID : consensus_9144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 885 fasta sequence [GAGGCCAAGATTCGGCACGAGGCGCCTTGTAACATTTGTAACATGGTTTCGAACCCTTAAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACATTGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTAACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTGAATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCANAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAAATTNTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTNTAATCTTCCAATTATGCCATCACATCCNTNNCAGCAACNAACTAANCAGTTNATAGAATGGTCATGAAATGNAATCATCACAGTCATAAATGGGGATGTGCCNTGATCGANTGNCTATGGTCAAAAATACGNTAAATCATACTATTCGTTNAAATCTGCATGGCAATATTTATTGAATAA] [+] EMBL CD081476 [GAGGCCAAGATTCGGCACGAGGCGCCTTGTAACATTTGTAACATGGTTTCGAACCCTTAAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACATTGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTAACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTGAATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACATCCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCTGAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATAGCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTTAGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCACGTAAACCTGATGGAACGACTCANAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTATATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAAATTNTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTNTAATCTTCCAATTATGCCATCACATCCNTNNCAGCAACNAACTAANCAGTTNATAGAATGGTCATGAAATGNAATCATCACAGTCATAAATGGGGATGTGCCNTGATCGANTGNCTATGGTCAAAAATACGNTAAATCATACTATTCGTTNAAATCTGCATGGCAATATTTATTGAATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9144#0 ----------------ACGACTCACTGTCTGAGTATGCACTACCGCGGTTTCGAACCCTT 44 consensus_9144#1 GAGGCCAAGATTCGGCACGAGGCGCCTTGT-AACATTTG-TAACATGGTTTCGAACCCTT 58 **** * * * * * ** ** * ************** consensus_9144#0 AAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACAT 104 consensus_9144#1 AAAATGACTTTCTCCAGACAAATGAATGTGATTAACCTATTACGGACAAGTTGGCTACAT 118 ************************************************************ consensus_9144#0 TGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTA 164 consensus_9144#1 TGTTATGTTAAGAATCGATACTCAGTAGCTCCAGTCACTGCATTATCCGAATCATCAGTA 178 ************************************************************ consensus_9144#0 ACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTG 224 consensus_9144#1 ACTAGTGACCAGGAATCTGAAACTTATTCCAATAAACTTAAATCCCTCAATTTCTCCGTG 238 ************************************************************ consensus_9144#0 AATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACAT 284 consensus_9144#1 AATTCAGTTACGTTACTCGGGACTGTCATTGGAATACAAACATTCCAAATGCAAAAACAT 298 ************************************************************ consensus_9144#0 CCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCT 344 consensus_9144#1 CCAGACCGCAACTGGATTCTAATATTCTTGAGAACGCAATCACATAGATACGTAAACGCT 358 ************************************************************ consensus_9144#0 GAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATA 404 consensus_9144#1 GAAGATAATCATTTAACTGAGACCTCTGATACTGATGAATATGATTCAAAATTTAAAATA 418 ************************************************************ consensus_9144#0 GCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTT 464 consensus_9144#1 GCATGGAACAGTACATCGAATAGAGTCCACGTCTTTAGTCCTAAATTGGTGTGGGCTCTT 478 ************************************************************ consensus_9144#0 AGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCA 524 consensus_9144#1 AGAGATGTTAAACTTGGAGAACGTTTACTAGTCACTGGATTTCTTTCTTATTATCGATCA 538 ************************************************************ consensus_9144#0 CGTAAACCTGATGGAACGACTCAAAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTAT 584 consensus_9144#1 CGTAAACCTGATGGAACGACTCANAGAAACTGCTGCGTCACGGCTCAGCGCATCGCTTAT 598 *********************** ************************************ consensus_9144#0 ATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAA 644 consensus_9144#1 ATGGGTTGGTCTAATGATTATCAGTCCAGTGAAAATCTAGAGGAAGTTCTTGAAACATAA 658 ************************************************************ consensus_9144#0 ATTTTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTTTAATCTTCCAATT 704 consensus_9144#1 ATTNTAGGAGAAGACTTATCACTATATGTTTCACAACATATATATTNTAATCTTCCAATT 718 *** ****************************************** ************* consensus_9144#0 AATGCCATCACATCCCTCCAGCAAACAAAAACTAAACAGTTAATAGAATGTTCAATGAAA 764 consensus_9144#1 A-TGCCATCACATCCNTN--NCAGCAACNAACTAANCAGTTNATAGAATGGTCA-TGAAA 774 * ************* * ** * ****** ***** ******** *** ***** consensus_9144#0 TGAATCCATTCACAGTTCATAAAATGGGATTGTGCCCTTGATCGATTGTCTATTGTCCAA 824 consensus_9144#1 TGNAATCAT-CACAGT-CATAAA-TGGGGATGTGCCNT-GATCGANTGNCTATGGTC--A 828 ** * *** ****** ****** **** ****** * ****** ** **** *** * consensus_9144#0 AAAATAACGTTTAATCTATACCTATTTCGTTTTAAATCTTGCATGTGCAAATATTTTATT 884 consensus_9144#1 AAAATA-CGNTAAATC-ATACT--ATTCGTTN-AAATCT-GCATG-GCAA-TATTT-ATT 879 ****** ** * **** **** ****** ****** ***** **** ***** *** consensus_9144#0 GAAATAAACAAGGAAACTGATTTTTTCCTGTATGTCATTCGACTGAGCATAGATTGTCTC 944 consensus_9144#1 GAA-TAA----------------------------------------------------- 885 *** *** consensus_9144#0 CTGAAACTTCGTAGTAATGGTGAGAATGCCATAATTAGCTGTATTTTCATTTTTCATACT 1004 consensus_9144#1 ------------------------------------------------------------ consensus_9144#0 TACG 1008 consensus_9144#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||