cluster # 9149

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Schistosoma mansoni
cluster # 9149 cluster # 9149 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9149#0 length = 516 sequences # 7

consensus_9149#1 length = 237 sequences # 1

consensusID : consensus_9149#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 516
fasta sequence

                              [AGGTTGATCGATAATAGAAGGAAGGAAT-TTTCTCATTTTAAATATATTAAAAGGTTAATTAACGGATTTATTTATTCATTTTCACATTTGGAACATTGTGATTCCAAATTCAATTCAGATTTATCATTGAACAAAAG-TGACAGTCTAGTCAAAATACAAATATGTCAACTTTAAGTCAACAACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGTCCTGTCTCTGAATGTGTACAAGAAATGATTGTGTATATGGAACAGAATCGTGATAAAGATTGTTTAGTTTCAGGATTTGCTAGTAAAAAAGATAATCCATTCCAAGAAAAAGGTGG-ATGTGTGGTGATTTAGGCAATTTAGTAAATG-ATAATAAAACAAAATAACTTTGAATTAATGTTCAGTCATTCTTATGCTTCTTTTTTCCTTTTCTTGAAAGAAACGAA-GTGAGTAAAACTAGTTCAATGTTCAATTAAATTGACTTGTTTCGAAAAAAAAAAAAAAAAAA]

[+] EMBL CD084030             [AGGTTGATCGATAATAGAAGGAAGGAAT TTTCTCATTTTAAATATATTAAAAGGTTAATTAACGGATTTATTTATTCATTTTCACATTTGGAACATTGTGATTCCAAATTCAATTCAGATTTATCATTGAACAAAAG TGACAGTCTAGTCAAAATACAAATATGTCAACTTTAAGTCAACAACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGTCCTGTCTCTGAATGTGTACAAGAAATGATTGTGTATATGGAACAGAATCGTGATAAAGATTGTTTAGTTTCAGGATTTGCTAGTAAAAAAGATAATCCATTCCAAGAAAAAGGTGG ATGTGTGGTGATTTAGGCAATTTAGTAAATG ATAATAAAACAAAATAACTTTGACTTAATGTTCAATCATTCTTATG                                                                                              ]
[+] EMBL CD084054             [   TTGATCGATAATAGAAGGAAGGAATATTTCTCATTTTAAATATATATAAAGGTTAATTAACGGATTTATTTATTCATTTTCACATTTGGAACATTGTGATTCCAAATTCAATTCAGATTTATCATTGAACAAAAG TGACAGTCTAGTCAAAATACAAATATGTCAACTTTAAGTCAACAACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGTCCTGTCTCTGAATGTGTACAAGAAATGATTGTGTATATGGAACAGAATCGTGATAAAGATTGTTTAGTTTCAGGATTTGCTAGTAAAAAAGATAATCCATTCCAAGAAAAAGGTGG ATGTGTGGTGATTTAGGCAATTTAGTAAATG ATAATAAAACAAAATAACTTTGACTTAATGTTCAATCATTC                                                                                                   ]
[+] EMBL AF540396             [                                                                  ATTTATTTATTCATTTTCACATTTGGAACATTGTGATTGCAAATTCAATCCAGATTTATCATTGAACAAAAG TGACAGTCTAGTCAAAATACAAATATGTCAACTTTAAGTCAACAACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGTCCTGTCTCTGAATGTGTACAAGAAATGATTGTGTATATGGAACAGAATCGTGATAAAGATTGTTTAGTTTCAGGATTTGCTAGTAAGAAAGATAATCCATTCCAAGAAAAAGGTGG ATGTGTGGTGATTTAGGCAATTTAGTAAATGAATAATAAAACAAAATAACTTTGAATTAATGTTCAGTCATTCTTATGCTTCTTTTTTCCTTTTCTTGAAAGAAACGAA GTGAGTAAAACTAGTTCAATGTTCAATTAAATTGACTTGTTTCGAAAAAAAAAAAAAAAAAA]
[+] EMBL AW587555             [                                                                        TTATTCATTTTCACATTTGGAACATTGTGATTGCAAATTCAATCCAGATTTATCATTGAACAAAAG TGACAGTCTAGTCAAAATACAAATATGTCAACTTTAAGTCAACAACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGTCCTGTCTCTGAATGTGTACAAGAAATGATTGTGTATATGGAACAGAATCGTGATAAAGATTGTTTAGTTTCAGGATTTGCTAGTAAGAAAGATAATCCATTCCAAG AAAAGGTGG ATGTGTGGTGATTTAGGCAATTTAGTAAATG ATAAT AAACAAAATAACTTTGAATTAATGTCCAGTCATTCTTATGCTTC TTTTTCCTTTTCTTGAAAG AACGGA GGGGGT AAACTAGTTCAATG TCAATTAAATTGA                           ]
[+] EMBL SMAA69220            [                                                                               TTTTCACATTTGGAACATTGTGATTCCAAATTCAATTCAGATTTATCATTGAACAAAAG TGACAGTCTAGTCAAAATACAAATATGTCAACTTTAAGTCAACAACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGT CTGTCTCTGAATGTGTACAAGAAATGATTGTGTATATGGAACAGA                                                                                                                                                                                                                                                   ]
[+] EMBL AW053278             [                                                                                                          AAATTCAATCCAGATTTATCATTGAACAAAAG TGACAGTCTAGTCAAAATACAAATATGTCAACTTTAAGTCAACAACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGTCCTGTCTCTGAATGTGTACAAGAAATGATTGTGTATATGGAACAGAATCGTGATAAAGATTGTTTAGTTTCAGGATTTGCTAGTAAGAAAGATAATCCATTCCAAGAAAAAGGTGG ATGTGTGGTGATTTAGGCAATTTAGTAAATG AATATTAAACAAAATAACTTTGAATTAATGTTCAGTCATTCTTATGCTTCTTTTTTCTTTTTCTTGAAAGAAACGAAGGTG GTAAAACTAGTTCAATGTTCAATTAAATTG                            ]
[+] EMBL AA791342             [                                                                                                            ATT AATTCAGATTTATCATTGAACAAAAGTTGACAGTTTAGTCAAAATACAAATATGTCAACTTTAAGTCAACAACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGTCCAGTCTCTGAATGTGTACAAGAAATGATTGTGTATATGGAACAGAATCGTGATAAAGATTGTTGAGTTTCAGGATTTGCTAGTAAAAAAGATAATCCATTCCAAG AAAAGGTGGTATGTGTG  GA TTAGACA  TTAGTAAATG  TAAT                                                                                                                                       ]




>consensus_9149#0
AGGTTGATCGATAATAGAAGGAAGGAATTTTCTCATTTTAAATATATTAAAAGGTTAATT
AACGGATTTATTTATTCATTTTCACATTTGGAACATTGTGATTCCAAATTCAATTCAGAT
TTATCATTGAACAAAAGTGACAGTCTAGTCAAAATACAAATATGTCAACTTTAAGTCAAC
AACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGTCCTGTCTCTG
AATGTGTACAAGAAATGATTGTGTATATGGAACAGAATCGTGATAAAGATTGTTTAGTTT
CAGGATTTGCTAGTAAAAAAGATAATCCATTCCAAGAAAAAGGTGGATGTGTGGTGATTT
AGGCAATTTAGTAAATGATAATAAAACAAAATAACTTTGAATTAATGTTCAGTCATTCTT
ATGCTTCTTTTTTCCTTTTCTTGAAAGAAACGAAGTGAGTAAAACTAGTTCAATGTTCAA
TTAAATTGACTTGTTTCGAAAAAAAAAAAAAAAAAA

consensusID : consensus_9149#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 237
fasta sequence

                              [ATGTGTATAAGGAACAGAATCGTGATAAAGATTGTTTAGTTTCAGGATTTGCTAGTAAGAAGATAATCCAATCCAAGAAAAAGGTGGAATGTGTGGTGATTTAGGCAATTTAATAATGATTATAAACAAATAACTTTGAATAATGTCAGTCAATCTTATGCTTCTTTTTTCCTTTCTTGAAAGAACGAGTGTGTAGAACTAGTTCATGTTCAATAAATGACTTGTTCTAAAAGAAAG]

[+] EMBL AI168872             [ATGTGTATAAGGAACAGAATCGTGATAAAGATTGTTTAGTTTCAGGATTTGCTAGTAAGAAGATAATCCAATCCAAGAAAAAGGTGGAATGTGTGGTGATTTAGGCAATTTAATAATGATTATAAACAAATAACTTTGAATAATGTCAGTCAATCTTATGCTTCTTTTTTCCTTTCTTGAAAGAACGAGTGTGTAGAACTAGTTCATGTTCAATAAATGACTTGTTCTAAAAGAAAG]




>consensus_9149#1
ATGTGTATAAGGAACAGAATCGTGATAAAGATTGTTTAGTTTCAGGATTTGCTAGTAAGA
AGATAATCCAATCCAAGAAAAAGGTGGAATGTGTGGTGATTTAGGCAATTTAATAATGAT
TATAAACAAATAACTTTGAATAATGTCAGTCAATCTTATGCTTCTTTTTTCCTTTCTTGA
AAGAACGAGTGTGTAGAACTAGTTCATGTTCAATAAATGACTTGTTCTAAAAGAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9149#0      AGGTTGATCGATAATAGAAGGAAGGAATTTTCTCATTTTAAATATATTAAAAGGTTAATT 60
consensus_9149#1      ------------------------------------------------------------
                                                                                  

consensus_9149#0      AACGGATTTATTTATTCATTTTCACATTTGGAACATTGTGATTCCAAATTCAATTCAGAT 120
consensus_9149#1      ------------------------------------------------------------
                                                                                  

consensus_9149#0      TTATCATTGAACAAAAGTGACAGTCTAGTCAAAATACAAATATGTCAACTTTAAGTCAAC 180
consensus_9149#1      ------------------------------------------------------------
                                                                                  

consensus_9149#0      AACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGTCCTGTCTCTG 240
consensus_9149#1      ------------------------------------------------------------
                                                                                  

consensus_9149#0      AATGTGTACAAGAAATGATTGTGTATATGGAACAGAATCGTGATAAAGATTGTTTAGTTT 300
consensus_9149#1      ------------------ATGTGTATAAGGAACAGAATCGTGATAAAGATTGTTTAGTTT 42
                                         ******** ********************************

consensus_9149#0      CAGGATTTGCTAGTAAAAAAGATAATCCATTCCAAGAAAAAGGTGGA-TGTGTGGTGATT 359
consensus_9149#1      CAGGATTTGCTAGTAAGAA-GATAATCCAATCCAAGAAAAAGGTGGAATGTGTGGTGATT 101
                      **************** ** ********* ***************** ************

consensus_9149#0      TAGGCAATTTAGTAAATGATAATAAAACAAAATAACTTTGAATTAATGTTCAGTCATTCT 419
consensus_9149#1      TAGGCAATTTAATAA-TGATTATAAA--CAAATAACTTTGAAT-AATGT-CAGTCAATCT 156
                      *********** *** **** *****   ************** ***** ****** ***

consensus_9149#0      TATGCTTCTTTTTTCCTTTTCTTGAAAGAAACGAAGTGAGTAAAACTAGTTCAATGTTCA 479
consensus_9149#1      TATGCTTCTTTTTTCCTTT-CTTGAAAGAA--CGAGTGTGTAGAACTAGTTCA-TGTTCA 212
                      ******************* **********    **** *** ********** ******

consensus_9149#0      ATTAAATTGACTTGTTTCGAAAAAAAAAAAAAAAAAA 516
consensus_9149#1      AT--AAATGACTTGTTCTAAAAGAAAG---------- 237
                      **  ** *********   *** ***