These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9149#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 516 fasta sequence [AGGTTGATCGATAATAGAAGGAAGGAAT-TTTCTCATTTTAAATATATTAAAAGGTTAATTAACGGATTTATTTATTCATTTTCACATTTGGAACATTGTGATTCCAAATTCAATTCAGATTTATCATTGAACAAAAG-TGACAGTCTAGTCAAAATACAAATATGTCAACTTTAAGTCAACAACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGTCCTGTCTCTGAATGTGTACAAGAAATGATTGTGTATATGGAACAGAATCGTGATAAAGATTGTTTAGTTTCAGGATTTGCTAGTAAAAAAGATAATCCATTCCAAGAAAAAGGTGG-ATGTGTGGTGATTTAGGCAATTTAGTAAATG-ATAATAAAACAAAATAACTTTGAATTAATGTTCAGTCATTCTTATGCTTCTTTTTTCCTTTTCTTGAAAGAAACGAA-GTGAGTAAAACTAGTTCAATGTTCAATTAAATTGACTTGTTTCGAAAAAAAAAAAAAAAAAA] [+] EMBL CD084030 [AGGTTGATCGATAATAGAAGGAAGGAAT TTTCTCATTTTAAATATATTAAAAGGTTAATTAACGGATTTATTTATTCATTTTCACATTTGGAACATTGTGATTCCAAATTCAATTCAGATTTATCATTGAACAAAAG TGACAGTCTAGTCAAAATACAAATATGTCAACTTTAAGTCAACAACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGTCCTGTCTCTGAATGTGTACAAGAAATGATTGTGTATATGGAACAGAATCGTGATAAAGATTGTTTAGTTTCAGGATTTGCTAGTAAAAAAGATAATCCATTCCAAGAAAAAGGTGG ATGTGTGGTGATTTAGGCAATTTAGTAAATG ATAATAAAACAAAATAACTTTGACTTAATGTTCAATCATTCTTATG ] [+] EMBL CD084054 [ TTGATCGATAATAGAAGGAAGGAATATTTCTCATTTTAAATATATATAAAGGTTAATTAACGGATTTATTTATTCATTTTCACATTTGGAACATTGTGATTCCAAATTCAATTCAGATTTATCATTGAACAAAAG TGACAGTCTAGTCAAAATACAAATATGTCAACTTTAAGTCAACAACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGTCCTGTCTCTGAATGTGTACAAGAAATGATTGTGTATATGGAACAGAATCGTGATAAAGATTGTTTAGTTTCAGGATTTGCTAGTAAAAAAGATAATCCATTCCAAGAAAAAGGTGG ATGTGTGGTGATTTAGGCAATTTAGTAAATG ATAATAAAACAAAATAACTTTGACTTAATGTTCAATCATTC ] [+] EMBL AF540396 [ ATTTATTTATTCATTTTCACATTTGGAACATTGTGATTGCAAATTCAATCCAGATTTATCATTGAACAAAAG TGACAGTCTAGTCAAAATACAAATATGTCAACTTTAAGTCAACAACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGTCCTGTCTCTGAATGTGTACAAGAAATGATTGTGTATATGGAACAGAATCGTGATAAAGATTGTTTAGTTTCAGGATTTGCTAGTAAGAAAGATAATCCATTCCAAGAAAAAGGTGG ATGTGTGGTGATTTAGGCAATTTAGTAAATGAATAATAAAACAAAATAACTTTGAATTAATGTTCAGTCATTCTTATGCTTCTTTTTTCCTTTTCTTGAAAGAAACGAA GTGAGTAAAACTAGTTCAATGTTCAATTAAATTGACTTGTTTCGAAAAAAAAAAAAAAAAAA] [+] EMBL AW587555 [ TTATTCATTTTCACATTTGGAACATTGTGATTGCAAATTCAATCCAGATTTATCATTGAACAAAAG TGACAGTCTAGTCAAAATACAAATATGTCAACTTTAAGTCAACAACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGTCCTGTCTCTGAATGTGTACAAGAAATGATTGTGTATATGGAACAGAATCGTGATAAAGATTGTTTAGTTTCAGGATTTGCTAGTAAGAAAGATAATCCATTCCAAG AAAAGGTGG ATGTGTGGTGATTTAGGCAATTTAGTAAATG ATAAT AAACAAAATAACTTTGAATTAATGTCCAGTCATTCTTATGCTTC TTTTTCCTTTTCTTGAAAG AACGGA GGGGGT AAACTAGTTCAATG TCAATTAAATTGA ] [+] EMBL SMAA69220 [ TTTTCACATTTGGAACATTGTGATTCCAAATTCAATTCAGATTTATCATTGAACAAAAG TGACAGTCTAGTCAAAATACAAATATGTCAACTTTAAGTCAACAACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGT CTGTCTCTGAATGTGTACAAGAAATGATTGTGTATATGGAACAGA ] [+] EMBL AW053278 [ AAATTCAATCCAGATTTATCATTGAACAAAAG TGACAGTCTAGTCAAAATACAAATATGTCAACTTTAAGTCAACAACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGTCCTGTCTCTGAATGTGTACAAGAAATGATTGTGTATATGGAACAGAATCGTGATAAAGATTGTTTAGTTTCAGGATTTGCTAGTAAGAAAGATAATCCATTCCAAGAAAAAGGTGG ATGTGTGGTGATTTAGGCAATTTAGTAAATG AATATTAAACAAAATAACTTTGAATTAATGTTCAGTCATTCTTATGCTTCTTTTTTCTTTTTCTTGAAAGAAACGAAGGTG GTAAAACTAGTTCAATGTTCAATTAAATTG ] [+] EMBL AA791342 [ ATT AATTCAGATTTATCATTGAACAAAAGTTGACAGTTTAGTCAAAATACAAATATGTCAACTTTAAGTCAACAACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGTCCAGTCTCTGAATGTGTACAAGAAATGATTGTGTATATGGAACAGAATCGTGATAAAGATTGTTGAGTTTCAGGATTTGCTAGTAAAAAAGATAATCCATTCCAAG AAAAGGTGGTATGTGTG GA TTAGACA TTAGTAAATG TAAT ] consensusID : consensus_9149#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 237 fasta sequence [ATGTGTATAAGGAACAGAATCGTGATAAAGATTGTTTAGTTTCAGGATTTGCTAGTAAGAAGATAATCCAATCCAAGAAAAAGGTGGAATGTGTGGTGATTTAGGCAATTTAATAATGATTATAAACAAATAACTTTGAATAATGTCAGTCAATCTTATGCTTCTTTTTTCCTTTCTTGAAAGAACGAGTGTGTAGAACTAGTTCATGTTCAATAAATGACTTGTTCTAAAAGAAAG] [+] EMBL AI168872 [ATGTGTATAAGGAACAGAATCGTGATAAAGATTGTTTAGTTTCAGGATTTGCTAGTAAGAAGATAATCCAATCCAAGAAAAAGGTGGAATGTGTGGTGATTTAGGCAATTTAATAATGATTATAAACAAATAACTTTGAATAATGTCAGTCAATCTTATGCTTCTTTTTTCCTTTCTTGAAAGAACGAGTGTGTAGAACTAGTTCATGTTCAATAAATGACTTGTTCTAAAAGAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9149#0 AGGTTGATCGATAATAGAAGGAAGGAATTTTCTCATTTTAAATATATTAAAAGGTTAATT 60 consensus_9149#1 ------------------------------------------------------------ consensus_9149#0 AACGGATTTATTTATTCATTTTCACATTTGGAACATTGTGATTCCAAATTCAATTCAGAT 120 consensus_9149#1 ------------------------------------------------------------ consensus_9149#0 TTATCATTGAACAAAAGTGACAGTCTAGTCAAAATACAAATATGTCAACTTTAAGTCAAC 180 consensus_9149#1 ------------------------------------------------------------ consensus_9149#0 AACGTAAACTAGTTGAACAATTACGTCAAGAAGCAAATTTAAATCGTCGTCCTGTCTCTG 240 consensus_9149#1 ------------------------------------------------------------ consensus_9149#0 AATGTGTACAAGAAATGATTGTGTATATGGAACAGAATCGTGATAAAGATTGTTTAGTTT 300 consensus_9149#1 ------------------ATGTGTATAAGGAACAGAATCGTGATAAAGATTGTTTAGTTT 42 ******** ******************************** consensus_9149#0 CAGGATTTGCTAGTAAAAAAGATAATCCATTCCAAGAAAAAGGTGGA-TGTGTGGTGATT 359 consensus_9149#1 CAGGATTTGCTAGTAAGAA-GATAATCCAATCCAAGAAAAAGGTGGAATGTGTGGTGATT 101 **************** ** ********* ***************** ************ consensus_9149#0 TAGGCAATTTAGTAAATGATAATAAAACAAAATAACTTTGAATTAATGTTCAGTCATTCT 419 consensus_9149#1 TAGGCAATTTAATAA-TGATTATAAA--CAAATAACTTTGAAT-AATGT-CAGTCAATCT 156 *********** *** **** ***** ************** ***** ****** *** consensus_9149#0 TATGCTTCTTTTTTCCTTTTCTTGAAAGAAACGAAGTGAGTAAAACTAGTTCAATGTTCA 479 consensus_9149#1 TATGCTTCTTTTTTCCTTT-CTTGAAAGAA--CGAGTGTGTAGAACTAGTTCA-TGTTCA 212 ******************* ********** **** *** ********** ****** consensus_9149#0 ATTAAATTGACTTGTTTCGAAAAAAAAAAAAAAAAAA 516 consensus_9149#1 AT--AAATGACTTGTTCTAAAAGAAAG---------- 237 ** ** ********* *** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||